mRNA_S-dermatodea_contig8385.16555.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8385.16555.1
Unique NamemRNA_S-dermatodea_contig8385.16555.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8385.16555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8385contigS-dermatodea_contig8385:2953..3641 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size689
Cds size384
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8385.16555.1prot_S-dermatodea_contig8385.16555.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8385 3036..3419 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925339.0848427-UTR-S-dermatodea_contig8385:2952..30351622925339.0848427-UTR-S-dermatodea_contig8385:2952..3035Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8385 2953..3035 +
1694079866.0329144-UTR-S-dermatodea_contig8385:2952..30351694079866.0329144-UTR-S-dermatodea_contig8385:2952..3035Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8385 2953..3035 +
1622925339.1063592-UTR-S-dermatodea_contig8385:3419..36411622925339.1063592-UTR-S-dermatodea_contig8385:3419..3641Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8385 3420..3641 +
1694079866.0588803-UTR-S-dermatodea_contig8385:3419..36411694079866.0588803-UTR-S-dermatodea_contig8385:3419..3641Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8385 3420..3641 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925339.0965953-CDS-S-dermatodea_contig8385:3035..34191622925339.0965953-CDS-S-dermatodea_contig8385:3035..3419Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8385 3036..3419 +
1694079866.0428917-CDS-S-dermatodea_contig8385:3035..34191694079866.0428917-CDS-S-dermatodea_contig8385:3035..3419Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8385 3036..3419 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8385.16555.1

>prot_S-dermatodea_contig8385.16555.1 ID=prot_S-dermatodea_contig8385.16555.1|Name=mRNA_S-dermatodea_contig8385.16555.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=128bp
MHVRGWFNRCHSHQEHKTDEWPRDRSTSAWVAVGFAPEHDLDRRTTSLQQ
SQALQHNNPFPPPRRTRSKPKRLPRRATKNMARAEEVGLSSNPAGLYCSC
VSTPASPPRNSATSSLAPAINKLKHKN*
back to top

mRNA from alignment at S-dermatodea_contig8385:2953..3641+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8385.16555.1 ID=mRNA_S-dermatodea_contig8385.16555.1|Name=mRNA_S-dermatodea_contig8385.16555.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=689bp|location=Sequence derived from alignment at S-dermatodea_contig8385:2953..3641+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTCGAGATCTCGCAACGTGTCAACCTCCACCAAGCAACCCCCCCCTCCAA
CCCGTCCACCCCGCTTCCGCTCTATAATCGGCTATGCATGTTCGTGGGTG
GTTCAACCGCTGCCACTCTCACCAGGAACACAAAACCGACGAATGGCCCC
GTGATCGATCTACCTCGGCGTGGGTTGCGGTCGGGTTCGCCCCTGAGCAT
GATCTCGATCGCCGGACCACGTCTCTGCAACAATCGCAAGCACTGCAACA
TAATAATCCCTTCCCGCCCCCTCGTCGCACCCGCTCAAAACCAAAACGTT
TGCCCCGTCGGGCCACGAAAAACATGGCGAGGGCTGAAGAGGTTGGTCTC
TCTTCTAATCCTGCAGGGCTATATTGTTCCTGTGTATCAACACCTGCCTC
CCCCCCTCGCAACAGCGCCACTTCATCTCTGGCTCCTGCAATAAACAAGT
TAAAGCATAAAAACTAGAGTATAAAAGCATCGAAACCCGAAGGGCTCATG
GGGCGTGATTCGCGCCCAGCTCTCCGTCCTTTTGGCGTTTACTCCACACC
TCGTTCGACACCTCGTCCCCGTCAGCCCCTGGTCTCTTCAACCCCGCCGC
GGCCTCCCACTTCCGCACTTCTATCGCCGCCCGCGCGACATCAACCTCAT
CCTCGTCATCCGCCGCGGCACCGCTCGAGTCATCGGGGC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig8385:2953..3641+

>mRNA_S-dermatodea_contig8385.16555.1 ID=mRNA_S-dermatodea_contig8385.16555.1|Name=mRNA_S-dermatodea_contig8385.16555.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at S-dermatodea_contig8385:2953..3641+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCATGTTCGTGGGTGGTTCAACCGCTGCCACTCTCACCAGGAACACAA
AACCGACGAATGGCCCCGTGATCGATCTACCTCGGCGTGGGTTGCGGTCG
GGTTCGCCCCTGAGCATGATCTCGATCGCCGGACCACGTCTCTGCAACAA
TCGCAAGCACTGCAACATAATAATCCCTTCCCGCCCCCTCGTCGCACCCG
CTCAAAACCAAAACGTTTGCCCCGTCGGGCCACGAAAAACATGGCGAGGG
CTGAAGAGGTTGGTCTCTCTTCTAATCCTGCAGGGCTATATTGTTCCTGT
GTATCAACACCTGCCTCCCCCCCTCGCAACAGCGCCACTTCATCTCTGGC
TCCTGCAATAAACAAGTTAAAGCATAAAAACTAGATGCATGTTCGTGGGT
GGTTCAACCGCTGCCACTCTCACCAGGAACACAAAACCGACGAATGGCCC
CGTGATCGATCTACCTCGGCGTGGGTTGCGGTCGGGTTCGCCCCTGAGCA
TGATCTCGATCGCCGGACCACGTCTCTGCAACAATCGCAAGCACTGCAAC
ATAATAATCCCTTCCCGCCCCCTCGTCGCACCCGCTCAAAACCAAAACGT
TTGCCCCGTCGGGCCACGAAAAACATGGCGAGGGCTGAAGAGGTTGGTCT
CTCTTCTAATCCTGCAGGGCTATATTGTTCCTGTGTATCAACACCTGCCT
CCCCCCCTCGCAACAGCGCCACTTCATCTCTGGCTCCTGCAATAAACAAG
TTAAAGCATAAAAACTAG
back to top