mRNA_S-dermatodea_contig83703.16545.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig83703.16545.1
Unique NamemRNA_S-dermatodea_contig83703.16545.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig83703.16545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig83703contigS-dermatodea_contig83703:385..718 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size334
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925338.4934874-CDS-S-dermatodea_contig83703:384..7111622925338.4934874-CDS-S-dermatodea_contig83703:384..711Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83703 385..711 +
1694079865.6242986-CDS-S-dermatodea_contig83703:384..7111694079865.6242986-CDS-S-dermatodea_contig83703:384..711Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83703 385..711 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925338.507195-UTR-S-dermatodea_contig83703:711..7181622925338.507195-UTR-S-dermatodea_contig83703:711..718Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig83703 712..718 +
1694079865.6351202-UTR-S-dermatodea_contig83703:711..7181694079865.6351202-UTR-S-dermatodea_contig83703:711..718Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig83703 712..718 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig83703.16545.1prot_S-dermatodea_contig83703.16545.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig83703 385..711 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig83703.16545.1

>prot_S-dermatodea_contig83703.16545.1 ID=prot_S-dermatodea_contig83703.16545.1|Name=mRNA_S-dermatodea_contig83703.16545.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=109bp
SRALQGPPVVCFPLTIECTISCTVSPRGQSVFLVCVALSWRRQRVLPRCA
SCHLVPVGSLLLYFFVIFPQLLPRFCFSRTRFAFCALRFNKLYLFARFYA
FILATLRR*
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mRNA from alignment at S-dermatodea_contig83703:385..718+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig83703.16545.1 ID=mRNA_S-dermatodea_contig83703.16545.1|Name=mRNA_S-dermatodea_contig83703.16545.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=334bp|location=Sequence derived from alignment at S-dermatodea_contig83703:385..718+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCCGTGCCTTGCAGGGGCCGCCTGTGGTTTGTTTTCCTTTAACGATCGA
GTGTACTATTTCGTGCACTGTTTCGCCAAGAGGGCAGAGCGTGTTTTTAG
TGTGTGTTGCACTTTCTTGGCGCCGTCAACGAGTTTTACCCCGTTGTGCG
AGCTGCCATTTAGTTCCCGTTGGTTCCCTTTTACTTTATTTTTTTGTGAT
CTTCCCACAACTTTTACCGCGATTTTGTTTCTCGCGAACGCGGTTCGCGT
TTTGCGCCCTCCGTTTTAATAAGTTGTACCTCTTTGCGCGGTTTTACGCG
TTTATTCTTGCCACGCTTCGTCGATAGTCTACTT
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Coding sequence (CDS) from alignment at S-dermatodea_contig83703:385..718+

>mRNA_S-dermatodea_contig83703.16545.1 ID=mRNA_S-dermatodea_contig83703.16545.1|Name=mRNA_S-dermatodea_contig83703.16545.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at S-dermatodea_contig83703:385..718+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCCGTGCCTTGCAGGGGCCGCCTGTGGTTTGTTTTCCTTTAACGATCGA
GTGTACTATTTCGTGCACTGTTTCGCCAAGAGGGCAGAGCGTGTTTTTAG
TGTGTGTTGCACTTTCTTGGCGCCGTCAACGAGTTTTACCCCGTTGTGCG
AGCTGCCATTTAGTTCCCGTTGGTTCCCTTTTACTTTATTTTTTTGTGAT
CTTCCCACAACTTTTACCGCGATTTTGTTTCTCGCGAACGCGGTTCGCGT
TTTGCGCCCTCCGTTTTAATAAGTTGTACCTCTTTGCGCGGTTTTACGCG
TTTATTCTTGCCACGCTTCGTCGATAGAGCCGTGCCTTGCAGGGGCCGCC
TGTGGTTTGTTTTCCTTTAACGATCGAGTGTACTATTTCGTGCACTGTTT
CGCCAAGAGGGCAGAGCGTGTTTTTAGTGTGTGTTGCACTTTCTTGGCGC
CGTCAACGAGTTTTACCCCGTTGTGCGAGCTGCCATTTAGTTCCCGTTGG
TTCCCTTTTACTTTATTTTTTTGTGATCTTCCCACAACTTTTACCGCGAT
TTTGTTTCTCGCGAACGCGGTTCGCGTTTTGCGCCCTCCGTTTTAATAAG
TTGTACCTCTTTGCGCGGTTTTACGCGTTTATTCTTGCCACGCTTCGTCG
ATAG
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