mRNA_S-dermatodea_contig8363.16538.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8363.16538.1
Unique NamemRNA_S-dermatodea_contig8363.16538.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig8363.16538.1 vs. uniprot
Match: D8LU92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU92_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 1.180e-34
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 1
Query:    4 CADCDAELTDYGNIWASVEQGCFVCVHCLAVHRSLGFRTKSVNMDFWALHEVARMTSMGNVKV 192
            CADCDAELTDYGNIWASV+QGCFVCVHCLAVHRSLGFRTKSVNMDFWA+ EVARMTSMGNVKV
Sbjct:    9 CADCDAELTDYGNIWASVDQGCFVCVHCLAVHRSLGFRTKSVNMDFWAVDEVARMTSMGNVKV 71          
BLAST of mRNA_S-dermatodea_contig8363.16538.1 vs. uniprot
Match: A0A836CKZ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKZ6_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.740e-13
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 1
Query:    4 CADCDAELTDYGNIWASVEQGCFVCVHCLAVHRSLG--FRTKSVNMDFWALHEVARMTSMGNVK 189
            C DCDAELTD  NIWASV+ GCFVCV+C  VH  L      KSV MD W   E+  + +MGNV+
Sbjct:  256 CCDCDAELTDLRNIWASVKIGCFVCVNCKQVHELLEPPLPCKSVYMDAWLDDELETVKAMGNVR 319          
BLAST of mRNA_S-dermatodea_contig8363.16538.1 vs. uniprot
Match: I0YZW3_COCSC (Arf GTPase activating protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YZW3_COCSC)

HSP 1 Score: 60.8 bits (146), Expect = 2.830e-10
Identity = 30/63 (47.62%), Postives = 38/63 (60.32%), Query Frame = 1
Query:    4 CADCDAELTDYGNIWASVEQGCFVCVHCLAVHRSLGF---RTKSVNMDFWALHEVARMTSMGN 183
            CADC+A     G  WASV  GCF+C++C  VHRSLG    + +S  +D W   +VA   SMGN
Sbjct:   31 CADCNAR----GPTWASVNLGCFICLNCSGVHRSLGVHCSKVRSTTLDTWLPEQVAFAQSMGN 89          
BLAST of mRNA_S-dermatodea_contig8363.16538.1 vs. uniprot
Match: A0A1A0HCY0_9ASCO (Arf GTPase activating protein (Fragment) n=1 Tax=Metschnikowia bicuspidata var. bicuspidata NRRL YB-4993 TaxID=869754 RepID=A0A1A0HCY0_9ASCO)

HSP 1 Score: 54.7 bits (130), Expect = 7.010e-8
Identity = 27/66 (40.91%), Postives = 35/66 (53.03%), Query Frame = 1
Query:    1 SCADCDAELTDYGNIWASVEQGCFVCVHCLAVHRSLGF---RTKSVNMDFWALHEVARMTSMGNVK 189
            SC DC +        WAS   GCF+C+ C  +HRS+G    R KSV++D W   +V  M   GN K
Sbjct:   30 SCVDCKSAQHPR---WASWNLGCFICIRCSGIHRSMGTHISRVKSVDLDVWTDEQVESMIKWGNEK 92          
BLAST of mRNA_S-dermatodea_contig8363.16538.1 vs. uniprot
Match: A0A2P7YMF3_9ASCO (Arf-GAP domain-containing protein n=3 Tax=Metschnikowiaceae incertae sedis TaxID=2937349 RepID=A0A2P7YMF3_9ASCO)

HSP 1 Score: 57.0 bits (136), Expect = 7.070e-8
Identity = 30/66 (45.45%), Postives = 36/66 (54.55%), Query Frame = 1
Query:    1 SCADCDAELTDYGNIWASVEQGCFVCVHCLAVHRSLGF---RTKSVNMDFWALHEVARMTSMGNVK 189
            SCADC    T     WAS   GCFVC+ C  +HRS+G    R KSV++D W   +V  M   GN K
Sbjct:   29 SCADCK---TAQHPRWASWNLGCFVCIRCSGIHRSMGTHISRVKSVDLDAWTDEQVELMLKWGNAK 91          
BLAST of mRNA_S-dermatodea_contig8363.16538.1 vs. uniprot
Match: A0A0J8B0I0_BETVV (Arf-GAP domain-containing protein (Fragment) n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8B0I0_BETVV)

HSP 1 Score: 54.7 bits (130), Expect = 7.290e-8
Identity = 26/67 (38.81%), Postives = 38/67 (56.72%), Query Frame = 1
Query:    1 SCADCDAELTDYGNIWASVEQGCFVCVHCLAVHRSLGF---RTKSVNMDFWALHEVARMTSMGNVKV 192
            +CADC+++       WAS+  GCF+C+ C  +HRS+G    + +SV +D W    V  M   GN KV
Sbjct:   20 TCADCNSKQPR----WASINLGCFICIRCSGIHRSVGVHISKVRSVTLDEWQPAWVDNMEKWGNKKV 82          
BLAST of mRNA_S-dermatodea_contig8363.16538.1 vs. uniprot
Match: C5M592_CANTT (Uncharacterized protein n=1 Tax=Candida tropicalis (strain ATCC MYA-3404 / T1) TaxID=294747 RepID=C5M592_CANTT)

HSP 1 Score: 56.2 bits (134), Expect = 1.210e-7
Identity = 28/66 (42.42%), Postives = 36/66 (54.55%), Query Frame = 1
Query:    1 SCADCDAELTDYGNIWASVEQGCFVCVHCLAVHRSLGF---RTKSVNMDFWALHEVARMTSMGNVK 189
            SCADC +        WAS   GCF+C+ C  VHRS+G    + KSV++D W   +V  M   GN K
Sbjct:   34 SCADCKSSKNPR---WASWSLGCFICIRCSGVHRSMGTHISKVKSVDLDAWTDDQVENMVRWGNQK 96          
BLAST of mRNA_S-dermatodea_contig8363.16538.1 vs. uniprot
Match: A0A0H5RBK5_9EUKA (Arf-GAP domain-containing protein n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5RBK5_9EUKA)

HSP 1 Score: 56.2 bits (134), Expect = 1.330e-7
Identity = 27/66 (40.91%), Postives = 37/66 (56.06%), Query Frame = 1
Query:    4 CADCDAELTDYGNIWASVEQGCFVCVHCLAVHRSLGF---RTKSVNMDFWALHEVARMTSMGNVKV 192
            CADC  +       WAS+  GCF+C+ C  +HRS+G    + +SV +D W    VA M + GN KV
Sbjct:   21 CADCSTKQPR----WASINIGCFICIRCSGIHRSIGVHISKVRSVTLDEWQPAWVANMENWGNKKV 82          
BLAST of mRNA_S-dermatodea_contig8363.16538.1 vs. uniprot
Match: A5DYQ7_LODEL (Uncharacterized protein n=1 Tax=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) TaxID=379508 RepID=A5DYQ7_LODEL)

HSP 1 Score: 56.2 bits (134), Expect = 1.330e-7
Identity = 27/66 (40.91%), Postives = 36/66 (54.55%), Query Frame = 1
Query:    1 SCADCDAELTDYGNIWASVEQGCFVCVHCLAVHRSLGF---RTKSVNMDFWALHEVARMTSMGNVK 189
            SCADC    T     WAS   GCF+C+ C  +HRS+G    + KSV++D W   ++  M   GN K
Sbjct:   38 SCADCK---TTKNPRWASWNLGCFICIRCSGIHRSMGTHISKVKSVDLDAWTDEQIENMVKWGNEK 100          
BLAST of mRNA_S-dermatodea_contig8363.16538.1 vs. uniprot
Match: A0A1Y2H0J7_9FUNG (Arf-GAP domain-containing protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2H0J7_9FUNG)

HSP 1 Score: 53.5 bits (127), Expect = 1.540e-7
Identity = 24/52 (46.15%), Postives = 31/52 (59.62%), Query Frame = 1
Query:   46 WASVEQGCFVCVHCLAVHRSLGF---RTKSVNMDFWALHEVARMTSMGNVKV 192
            WAS   GCF+C+ C  VHRS+G    + KSV++D W   +V  M   GN KV
Sbjct:   43 WASFNIGCFMCIRCSGVHRSMGTHISKVKSVDLDSWTAEQVENMIKWGNGKV 94          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8363.16538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU92_ECTSI1.180e-3495.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CKZ6_9STRA2.740e-1356.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
I0YZW3_COCSC2.830e-1047.62Arf GTPase activating protein n=1 Tax=Coccomyxa su... [more]
A0A1A0HCY0_9ASCO7.010e-840.91Arf GTPase activating protein (Fragment) n=1 Tax=M... [more]
A0A2P7YMF3_9ASCO7.070e-845.45Arf-GAP domain-containing protein n=3 Tax=Metschni... [more]
A0A0J8B0I0_BETVV7.290e-838.81Arf-GAP domain-containing protein (Fragment) n=1 T... [more]
C5M592_CANTT1.210e-742.42Uncharacterized protein n=1 Tax=Candida tropicalis... [more]
A0A0H5RBK5_9EUKA1.330e-740.91Arf-GAP domain-containing protein n=1 Tax=Spongosp... [more]
A5DYQ7_LODEL1.330e-740.91Uncharacterized protein n=1 Tax=Lodderomyces elong... [more]
A0A1Y2H0J7_9FUNG1.540e-746.15Arf-GAP domain-containing protein n=1 Tax=Lobospor... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8363contigS-dermatodea_contig8363:9028..9225 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.0
Seed ortholog evalue2.5e-29
Seed eggNOG ortholog2880.D8LU92
KEGG koko:K12486,ko:K20164
KEGG Pathwayko04144,map04144
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005938,GO:0006950,GO:0007154,GO:0008150,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0016020,GO:0017016,GO:0017048,GO:0019899,GO:0030139,GO:0030587,GO:0031152,GO:0031267,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032009,GO:0032502,GO:0033554,GO:0042594,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0044764,GO:0045335,GO:0048365,GO:0048856,GO:0050896,GO:0051020,GO:0051703,GO:0051704,GO:0051716,GO:0071496,GO:0071944,GO:0090702,GO:0097708,GO:0098630,GO:0098743,GO:0099120,GO:0099568
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5347@1,KOG0703@2759,KOG2127@1,KOG2127@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925338.002993-CDS-S-dermatodea_contig8363:9027..92251622925338.002993-CDS-S-dermatodea_contig8363:9027..9225Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8363 9028..9225 +
1694079865.2615595-CDS-S-dermatodea_contig8363:9027..92251694079865.2615595-CDS-S-dermatodea_contig8363:9027..9225Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8363 9028..9225 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8363.16538.1prot_S-dermatodea_contig8363.16538.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8363 9028..9225 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8363.16538.1

>prot_S-dermatodea_contig8363.16538.1 ID=prot_S-dermatodea_contig8363.16538.1|Name=mRNA_S-dermatodea_contig8363.16538.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=66bp
SCADCDAELTDYGNIWASVEQGCFVCVHCLAVHRSLGFRTKSVNMDFWAL
HEVARMTSMGNVKVRS
back to top

mRNA from alignment at S-dermatodea_contig8363:9028..9225+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8363.16538.1 ID=mRNA_S-dermatodea_contig8363.16538.1|Name=mRNA_S-dermatodea_contig8363.16538.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at S-dermatodea_contig8363:9028..9225+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGTTGCGCCGACTGCGACGCGGAGCTCACGGACTACGGCAACATCTGGGC GAGCGTGGAGCAGGGCTGCTTCGTGTGCGTGCACTGCCTGGCGGTTCACC GCTCCCTCGGTTTCCGAACGAAGAGCGTCAACATGGACTTCTGGGCGTTG CACGAGGTGGCTCGGATGACATCCATGGGAAACGTGAAGGTACGGTCA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig8363:9028..9225+

>mRNA_S-dermatodea_contig8363.16538.1 ID=mRNA_S-dermatodea_contig8363.16538.1|Name=mRNA_S-dermatodea_contig8363.16538.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at S-dermatodea_contig8363:9028..9225+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGTTGCGCCGACTGCGACGCGGAGCTCACGGACTACGGCAACATCTGGGC
GAGCGTGGAGCAGGGCTGCTTCGTGTGCGTGCACTGCCTGGCGGTTCACC
GCTCCCTCGGTTTCCGAACGAAGAGCGTCAACATGGACTTCTGGGCGTTG
CACGAGGTGGCTCGGATGACATCCATGGGAAACGTGAAGGTACGGTCAAG
TTGCGCCGACTGCGACGCGGAGCTCACGGACTACGGCAACATCTGGGCGA
GCGTGGAGCAGGGCTGCTTCGTGTGCGTGCACTGCCTGGCGGTTCACCGC
TCCCTCGGTTTCCGAACGAAGAGCGTCAACATGGACTTCTGGGCGTTGCA
CGAGGTGGCTCGGATGACATCCATGGGAAACGTGAAGGTACGGTCA
back to top