mRNA_S-dermatodea_contig8328.16515.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8328.16515.1
Unique NamemRNA_S-dermatodea_contig8328.16515.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8328.16515.1 vs. uniprot
Match: D7FK96_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK96_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 8.120e-14
Identity = 32/46 (69.57%), Postives = 35/46 (76.09%), Query Frame = 3 
Query:   78 MWVIEPLKQASGKGGNFTKIAAKEGLKLLTFFAVVRAAHYALNRSR 215
            MWVIEP+KQA+GKG  F K A   GLKLL FFA VR AHYA+NR R
Sbjct:    1 MWVIEPIKQANGKGNEFRKAATSSGLKLLAFFAAVRVAHYAMNRPR 46
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8328.16515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FK96_ECTSI8.120e-1469.57Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8328contigS-dermatodea_contig8328:3304..5437 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-17_003260.1
Exons2
Model size344
Cds size141
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8328.16515.1prot_S-dermatodea_contig8328.16515.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8328 3381..5311 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925336.10411-UTR-S-dermatodea_contig8328:3303..33801622925336.10411-UTR-S-dermatodea_contig8328:3303..3380Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8328 3304..3380 +
1694079863.8828726-UTR-S-dermatodea_contig8328:3303..33801694079863.8828726-UTR-S-dermatodea_contig8328:3303..3380Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8328 3304..3380 +
1622925336.1343887-UTR-S-dermatodea_contig8328:5311..54371622925336.1343887-UTR-S-dermatodea_contig8328:5311..5437Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8328 5312..5437 +
1694079863.9313126-UTR-S-dermatodea_contig8328:5311..54371694079863.9313126-UTR-S-dermatodea_contig8328:5311..5437Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8328 5312..5437 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925336.117139-CDS-S-dermatodea_contig8328:3380..34071622925336.117139-CDS-S-dermatodea_contig8328:3380..3407Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8328 3381..3407 +
1694079863.9021235-CDS-S-dermatodea_contig8328:3380..34071694079863.9021235-CDS-S-dermatodea_contig8328:3380..3407Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8328 3381..3407 +
1622925336.125885-CDS-S-dermatodea_contig8328:5197..53111622925336.125885-CDS-S-dermatodea_contig8328:5197..5311Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8328 5198..5311 +
1694079863.91349-CDS-S-dermatodea_contig8328:5197..53111694079863.91349-CDS-S-dermatodea_contig8328:5197..5311Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8328 5198..5311 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8328.16515.1

>prot_S-dermatodea_contig8328.16515.1 ID=prot_S-dermatodea_contig8328.16515.1|Name=mRNA_S-dermatodea_contig8328.16515.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=47bp
MWVIEPLKQASGKGGNFTKIAAKEGLKLLTFFAVVRAAHYALNRSR*
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mRNA from alignment at S-dermatodea_contig8328:3304..5437+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8328.16515.1 ID=mRNA_S-dermatodea_contig8328.16515.1|Name=mRNA_S-dermatodea_contig8328.16515.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2134bp|location=Sequence derived from alignment at S-dermatodea_contig8328:3304..5437+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTTGCTTGCTCTCTGGGCGTGAGCTAGCTTCACGCACCGCCTCACCGGAA
CCTCCCTCGCTAACCGAAGAGAGTACCATGTGGGTCATCGAGCCACTAAA
GCAGGTGCGCTCGGCATTGGTTGGCTTTTTGTCGCTTGTCTCGCCATCAA
TATTCTACCATCTTTGGGAGTACTTTTCGAGGCTGGCCAGCCAGCAGAGG
CAAATCCGGTTCGCGAGTCAGTGATCCCCTCTGATTACAGGTTTATAGCG
CGAGGCCACCAAGCACGAACGATAGGGTCTGAGGCTCGAGGGCCAGGCCA
GGCGTGCATAGCTTTGCAAGGTCGTTTTCTCCACCCTATGCTCGCGACGA
ATGGGGCAGAATTCACGGTTGCTGCGTATGGTACGGTCATTGTGATCGCG
AGACGGCCGCTATCGACATCCTAGTGGTCTGCGGTCATCAGACTTAGGTG
CTTCCATCTACAAGTATACCACACAACTGTTGTCAGTATCGTAGTACAGG
GTACCAGGTAGTCTTGCATAGGGCGTATGAAGCACACTGCTGTTATCATA
CATGCTTTGATACTGCTGTATAAACACAAAGTTGTGATGATGTATCACGG
CAGAGTGCATCCATGCCATACATAAGAAGGGTACTACGAGGTTGTCCGCA
ACGTGGACAGCGGTTTGGGTATTTTGGGCAATGTCCCGCACGATATCATA
CAGAAGGCAAACTACTTGATCTGTGACAGCGTGACAGCAGTACACTTCAC
CCTTCCTTGTGTTTATGATGTACAGGAACGTGACAAAAGCTGTAGTACAT
TAGTAGTGTCTACTGTCTAGGAAATCGTTTTGGCCAGATTTGCGCAGACA
AGTCTGTCCCGACAAAACAACCGCAGTATGTAGTGTAAATTGTCATTAGT
GTACTCCTTCCTTCTCTAGGAACGCTTGATCTACACAACAATTTGCCGCA
GCCTTGAAAACTTCGACGGTACATGTAGTATTATCTCACCTGGCTTTGCG
GGTATTAATAGATCATTTCGATGCCTACATGCATGATATCTAATACAGAG
TGACACGTTTTGCTTTTATTTGCCGAAGGGGGTACAGGCACGCCAAAGCA
TCAACACGTTGCAAAAGACAGGCTCGAAGCTGTCGACACGTTAACTCCTT
TCTCGAGTGACCGAGGGTATCATAGTTTGTGTAATGGAAATGAGACAATG
GACCTTGTATGGTACTGCTGTAATATGAAGGGATTCGTCCCACCTTGCGT
ACGTACCATCGTGAGTTTTGTAATAGGTGAAGCTATCATAAAGGGTATCA
ATCTGCTGTAACTGGCGTCGCAAACGCAAGGATGATGACTATCAAAGCAG
CTGGTGATCATCCTTGTAAAAGACAGCCTGGTCGGTGAAAGCACGGCATA
CCCCTCCTTCCTATAGGGAAATTTCCTTCGGGGTCAACTTGGAGTTGGAT
GCCCCTCATGGCGTTCTTCCTCGTATGTTCCATACGAGGAAGAACGCCCT
GTGGCAACACCCCCCCACCACGGGGTCCACCATCGGATGCCGTGCTTAAC
CCTTTTGGGACTAAGGCTGTTTTCGGGTAACTGTTTGCTATCATGGTAGC
CAACAGTTACCGGAAAACAGGTTTCGTCCCCAGGCTTTGTCCCAAAAGGG
TAAATAATATTAGCAAACAGTTACCCGAAAACAGGCATAGTCCCAAAAGG
GTTAAAGGGCGGTGGAACCATTTGGTCAAGAGTGAGGTCTCTTTTCCCGC
ACTTAATCGTGCCTCGATTACCGCAAGTTGTTGGGATGCGTGGTCGACGT
CCGTTAGGATACGACATGCATGCGTCCAACACCAGTACCCCTCCCCACCC
CCTGCCCTCTTCCCCTACCACACTATTGCTTCGGCTGCGATTAGGCAAGC
GGGAAGGGAGGCAATTTCACAAAGATTGCGGCCAAGGAGGGGCTGAAACT
TTTGACATTTTTCGCTGTGGTGCGGGCGGCGCACTACGCGCTCAACAGAT
CAAGATGACGCCGAAGCCGCGAAACGTATCGCCGCCGCGCCCGCGTTGTG
GAGTACAGCCCGTCGAACAACAGCGTCGTGTAACTGATGCTTTTTTCTAT
GGACCTTGAGACCCAGGGAGGGGGGCGGAGGAGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8328:3304..5437+

>mRNA_S-dermatodea_contig8328.16515.1 ID=mRNA_S-dermatodea_contig8328.16515.1|Name=mRNA_S-dermatodea_contig8328.16515.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=282bp|location=Sequence derived from alignment at S-dermatodea_contig8328:3304..5437+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTGGGTCATCGAGCCACTAAAGCAGATGTGGGTCATCGAGCCACTAAA
GCAGGCAAGCGGGAAGGGAGGCAATTTCACAAAGATTGCGGCCAAGGAGG
GGCTGAAACTTTTGACATTTTTCGCTGTGGTGCGGGCGGCGCACTACGCG
CTCAACAGATCAAGATGAGCAAGCGGGAAGGGAGGCAATTTCACAAAGAT
TGCGGCCAAGGAGGGGCTGAAACTTTTGACATTTTTCGCTGTGGTGCGGG
CGGCGCACTACGCGCTCAACAGATCAAGATGA
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