mRNA_S-dermatodea_contig83263.16513.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig83263.16513.1
Unique NamemRNA_S-dermatodea_contig83263.16513.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig83263.16513.1 vs. uniprot
Match: A0A2E2R661_9BURK (Uncharacterized protein n=1 Tax=Sutterellaceae bacterium TaxID=2026794 RepID=A0A2E2R661_9BURK)

HSP 1 Score: 224 bits (571), Expect = 4.780e-73
Identity = 117/131 (89.31%), Postives = 124/131 (94.66%), Query Frame = 1 
Query:  106 MAVQSQVKLPSGGLREQSDSIIRVRTPANATAQTCGTAALNGQITIPYLADSTTRQWEMTSTAQQGVELPRKRTLTTMDGYGNATQVQEQTLNANGTASGYSRTTTNTYDSNAERARQGRLIRSTVTHVKP 498
            MAVQ+QVKLP GGLREQ+DSIIRVRT ANATAQTCGTAALNGQI IPY ADSTTRQWEMTST+QQGVELPRKRTLTT+DGYGNATQ+QEQTLN +GTASGYSRTT NTYDSNAERARQGRLI+S VTHVKP
Sbjct:    1 MAVQTQVKLPLGGLREQTDSIIRVRTLANATAQTCGTAALNGQIVIPYTADSTTRQWEMTSTSQQGVELPRKRTLTTLDGYGNATQMQEQTLNPDGTASGYSRTTINTYDSNAERARQGRLIKSAVTHVKP 131
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig83263.16513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2E2R661_9BURK4.780e-7389.31Uncharacterized protein n=1 Tax=Sutterellaceae bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig83263contigS-dermatodea_contig83263:228..728 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size501
Cds size480
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925336.004878-CDS-S-dermatodea_contig83263:227..7071622925336.004878-CDS-S-dermatodea_contig83263:227..707Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83263 228..707 -
1694079863.8268-CDS-S-dermatodea_contig83263:227..7071694079863.8268-CDS-S-dermatodea_contig83263:227..707Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83263 228..707 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925336.0150867-UTR-S-dermatodea_contig83263:707..7281622925336.0150867-UTR-S-dermatodea_contig83263:707..728Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig83263 708..728 -
1694079863.8384924-UTR-S-dermatodea_contig83263:707..7281694079863.8384924-UTR-S-dermatodea_contig83263:707..728Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig83263 708..728 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig83263.16513.1prot_S-dermatodea_contig83263.16513.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig83263 228..707 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig83263.16513.1

>prot_S-dermatodea_contig83263.16513.1 ID=prot_S-dermatodea_contig83263.16513.1|Name=mRNA_S-dermatodea_contig83263.16513.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=160bp
MESQMTGSDGVSMPALRTTYSQQWPCLGMAVQSQVKLPSGGLREQSDSII
RVRTPANATAQTCGTAALNGQITIPYLADSTTRQWEMTSTAQQGVELPRK
RTLTTMDGYGNATQVQEQTLNANGTASGYSRTTTNTYDSNAERARQGRLI
RSTVTHVKP*
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mRNA from alignment at S-dermatodea_contig83263:228..728-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig83263.16513.1 ID=mRNA_S-dermatodea_contig83263.16513.1|Name=mRNA_S-dermatodea_contig83263.16513.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=501bp|location=Sequence derived from alignment at S-dermatodea_contig83263:228..728- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTTTTTTAGGGTTTGAGAGGATGGAGAGCCAGATGACGGGCTCAGATGG
GGTGTCGATGCCAGCGTTGCGCACGACCTACTCACAGCAGTGGCCGTGTT
TGGGGATGGCGGTGCAAAGCCAGGTGAAGCTTCCTTCAGGCGGATTGCGT
GAGCAAAGCGACAGCATCATACGGGTGAGAACCCCGGCCAATGCCACGGC
ACAAACCTGCGGCACGGCAGCGCTCAATGGTCAGATCACCATTCCCTATC
TGGCAGACAGCACAACTCGGCAGTGGGAGATGACCTCGACCGCGCAACAA
GGGGTGGAGCTGCCAAGAAAGCGCACGCTCACCACAATGGATGGTTATGG
CAACGCCACGCAGGTGCAGGAACAAACGCTAAACGCCAATGGCACGGCCA
GTGGCTACAGCCGCACCACGACCAACACGTATGACAGCAATGCAGAGCGG
GCCAGACAGGGCCGACTGATCCGAAGCACCGTCACCCATGTCAAGCCGTG
A
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Coding sequence (CDS) from alignment at S-dermatodea_contig83263:228..728-

>mRNA_S-dermatodea_contig83263.16513.1 ID=mRNA_S-dermatodea_contig83263.16513.1|Name=mRNA_S-dermatodea_contig83263.16513.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=960bp|location=Sequence derived from alignment at S-dermatodea_contig83263:228..728- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGAGCCAGATGACGGGCTCAGATGGGGTGTCGATGCCAGCGTTGCG
CACGACCTACTCACAGCAGTGGCCGTGTTTGGGGATGGCGGTGCAAAGCC
AGGTGAAGCTTCCTTCAGGCGGATTGCGTGAGCAAAGCGACAGCATCATA
CGGGTGAGAACCCCGGCCAATGCCACGGCACAAACCTGCGGCACGGCAGC
GCTCAATGGTCAGATCACCATTCCCTATCTGGCAGACAGCACAACTCGGC
AGTGGGAGATGACCTCGACCGCGCAACAAGGGGTGGAGCTGCCAAGAAAG
CGCACGCTCACCACAATGGATGGTTATGGCAACGCCACGCAGGTGCAGGA
ACAAACGCTAAACGCCAATGGCACGGCCAGTGGCTACAGCCGCACCACGA
CCAACACGTATGACAGCAATGCAGAGCGGGCCAGACAGGGCCGACTGATC
CGAAGCACCGTCACCCATGTCAAGCCGTGAATGGAGAGCCAGATGACGGG
CTCAGATGGGGTGTCGATGCCAGCGTTGCGCACGACCTACTCACAGCAGT
GGCCGTGTTTGGGGATGGCGGTGCAAAGCCAGGTGAAGCTTCCTTCAGGC
GGATTGCGTGAGCAAAGCGACAGCATCATACGGGTGAGAACCCCGGCCAA
TGCCACGGCACAAACCTGCGGCACGGCAGCGCTCAATGGTCAGATCACCA
TTCCCTATCTGGCAGACAGCACAACTCGGCAGTGGGAGATGACCTCGACC
GCGCAACAAGGGGTGGAGCTGCCAAGAAAGCGCACGCTCACCACAATGGA
TGGTTATGGCAACGCCACGCAGGTGCAGGAACAAACGCTAAACGCCAATG
GCACGGCCAGTGGCTACAGCCGCACCACGACCAACACGTATGACAGCAAT
GCAGAGCGGGCCAGACAGGGCCGACTGATCCGAAGCACCGTCACCCATGT
CAAGCCGTGA
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