mRNA_S-dermatodea_contig83217.16508.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig83217.16508.1
Unique NamemRNA_S-dermatodea_contig83217.16508.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig83217.16508.1 vs. uniprot
Match: A0A7R9ZK66_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZK66_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.290e-22
Identity = 41/50 (82.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    7 QAVACFRMAIRTDRRHYNAWYGLGSIYHRQEKYDMAEYHFRRALSINPQS 156
            +AVACFR AI  D RHYNAWYGLG+IYHRQEKYD+AEYHF+RA+SINPQS
Sbjct:    6 KAVACFRSAIHVDDRHYNAWYGLGAIYHRQEKYDLAEYHFQRAVSINPQS 55
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BLAST of mRNA_S-dermatodea_contig83217.16508.1 vs. uniprot
Match: A0A7S2EVH2_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EVH2_TRICV)

HSP 1 Score: 92.4 bits (228), Expect = 1.120e-21
Identity = 42/50 (84.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    7 QAVACFRMAIRTDRRHYNAWYGLGSIYHRQEKYDMAEYHFRRALSINPQS 156
            +A ACFR AIR+D RHYNAWYGLG+IY RQEKYD+AEYHFRRALSINPQS
Sbjct:   75 KAAACFRDAIRSDDRHYNAWYGLGAIYFRQEKYDLAEYHFRRALSINPQS 124
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BLAST of mRNA_S-dermatodea_contig83217.16508.1 vs. uniprot
Match: A0A7S1GJ14_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GJ14_CYCTE)

HSP 1 Score: 89.4 bits (220), Expect = 1.720e-20
Identity = 37/52 (71.15%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:    1 WLQAVACFRMAIRTDRRHYNAWYGLGSIYHRQEKYDMAEYHFRRALSINPQS 156
            +++AVAC+R AIR D RHYNAWYGLG++YHRQEK+D+AEYHF++A  INPQS
Sbjct:   73 FVKAVACYRDAIRADERHYNAWYGLGTVYHRQEKFDLAEYHFQKACEINPQS 124
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BLAST of mRNA_S-dermatodea_contig83217.16508.1 vs. uniprot
Match: A0A7S4N5K4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N5K4_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 4.680e-20
Identity = 39/50 (78.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    7 QAVACFRMAIRTDRRHYNAWYGLGSIYHRQEKYDMAEYHFRRALSINPQS 156
            +AV C+R A+R+D RHYNAWYGLG+IY+RQEKYD+AEYHFRRALS+NPQS
Sbjct:  872 KAVQCYRDALRSDGRHYNAWYGLGAIYYRQEKYDLAEYHFRRALSVNPQS 921
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BLAST of mRNA_S-dermatodea_contig83217.16508.1 vs. uniprot
Match: A0A1Z5K6F8_FISSO (Anaphase-promoting complex subunit 3 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K6F8_FISSO)

HSP 1 Score: 87.0 bits (214), Expect = 1.050e-18
Identity = 38/49 (77.55%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:   10 AVACFRMAIRTDRRHYNAWYGLGSIYHRQEKYDMAEYHFRRALSINPQS 156
            A+ACFR AIRT+ RHYNAWYGLG IYHRQEKYD+AEYHF RA  I+P S
Sbjct:  473 AMACFRQAIRTNERHYNAWYGLGCIYHRQEKYDLAEYHFERACQIHPTS 521
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BLAST of mRNA_S-dermatodea_contig83217.16508.1 vs. uniprot
Match: A0A7S2UWI3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWI3_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.760e-18
Identity = 36/50 (72.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    7 QAVACFRMAIRTDRRHYNAWYGLGSIYHRQEKYDMAEYHFRRALSINPQS 156
            +A+AC+R A+R D+RHYNAWYGLG+IY RQEKY++AEYHFRRAL+I+P S
Sbjct:  169 RAMACYRDALRLDKRHYNAWYGLGTIYQRQEKYELAEYHFRRALAIHPSS 218
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BLAST of mRNA_S-dermatodea_contig83217.16508.1 vs. uniprot
Match: A0A7S4QN69_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QN69_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 9.360e-18
Identity = 39/52 (75.00%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:    7 QAVACFRMAIRTDR--RHYNAWYGLGSIYHRQEKYDMAEYHFRRALSINPQS 156
            +AV+C+R AIRTD   RHYNAWYGLG+IY RQEKYD+AEYHF++AL+INPQS
Sbjct:  836 KAVSCYRDAIRTDGCGRHYNAWYGLGAIYFRQEKYDLAEYHFQKALTINPQS 887
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BLAST of mRNA_S-dermatodea_contig83217.16508.1 vs. uniprot
Match: W7T759_9STRA (Tetratricopeptide TPR-1 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T759_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.090e-17
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    7 QAVACFRMAIRTDRRHYNAWYGLGSIYHRQEKYDMAEYHFRRALSINPQS 156
            +AVAC+R A+R D RHYNAWYGLG+IY RQEKY++AEYHF RALSIN  S
Sbjct:  116 KAVACYRYALRLDDRHYNAWYGLGTIYFRQEKYELAEYHFSRALSINTAS 165
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BLAST of mRNA_S-dermatodea_contig83217.16508.1 vs. uniprot
Match: A0A8J9RZ11_PHATR (Hypothetical protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9RZ11_PHATR)

HSP 1 Score: 82.8 bits (203), Expect = 1.620e-17
Identity = 33/52 (63.46%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:    1 WLQAVACFRMAIRTDRRHYNAWYGLGSIYHRQEKYDMAEYHFRRALSINPQS 156
            +++A+ACFR A+RTD +HYNAWYGLG+IY RQEK+D+AEYHF +A++++P S
Sbjct:  159 FVKAIACFRQALRTDDKHYNAWYGLGAIYQRQEKFDLAEYHFGKAVALHPTS 210
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BLAST of mRNA_S-dermatodea_contig83217.16508.1 vs. uniprot
Match: A0A7S3F8Q8_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3F8Q8_9VIRI)

HSP 1 Score: 82.8 bits (203), Expect = 2.090e-17
Identity = 36/50 (72.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    7 QAVACFRMAIRTDRRHYNAWYGLGSIYHRQEKYDMAEYHFRRALSINPQS 156
            + + C+R AIR D RHYNAWYGLG+IY RQEKYD+AE+HFRRAL+INP+S
Sbjct:  179 KGLTCYRGAIRIDARHYNAWYGLGAIYLRQEKYDLAEHHFRRALNINPRS 228
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig83217.16508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R9ZK66_9STRA1.290e-2282.00Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S2EVH2_TRICV1.120e-2184.00Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S1GJ14_CYCTE1.720e-2071.15Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S4N5K4_9STRA4.680e-2078.00Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A1Z5K6F8_FISSO1.050e-1877.55Anaphase-promoting complex subunit 3 n=2 Tax=Fistu... [more]
A0A7S2UWI3_9STRA1.760e-1872.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4QN69_9STRA9.360e-1875.00Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
W7T759_9STRA1.090e-1774.00Tetratricopeptide TPR-1 n=2 Tax=Nannochloropsis ga... [more]
A0A8J9RZ11_PHATR1.620e-1763.46Hypothetical protein n=2 Tax=Phaeodactylum tricorn... [more]
A0A7S3F8Q8_9VIRI2.090e-1772.00Hypothetical protein n=1 Tax=Prasinoderma singular... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig83217contigS-dermatodea_contig83217:128..283 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue2e-11
Seed eggNOG ortholog35128.Thaps39726
Preferred nameCDC27
KEGG koko:K03350
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00389
GOsGO:0000003,GO:0000070,GO:0000151,GO:0000152,GO:0000209,GO:0000278,GO:0000280,GO:0000375,GO:0000377,GO:0000398,GO:0000819,GO:0001775,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005680,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006810,GO:0006887,GO:0006996,GO:0007049,GO:0007050,GO:0007059,GO:0007088,GO:0007091,GO:0007275,GO:0007338,GO:0007343,GO:0007346,GO:0007389,GO:0008150,GO:0008152,GO:0008283,GO:0008356,GO:0008380,GO:0009056,GO:0009057,GO:0009504,GO:0009566,GO:0009653,GO:0009719,GO:0009725,GO:0009733,GO:0009790,GO:0009791,GO:0009793,GO:0009798,GO:0009888,GO:0009896,GO:0009933,GO:0009948,GO:0009949,GO:0009952,GO:0009987,GO:0010014,GO:0010015,GO:0010033,GO:0010071,GO:0010154,GO:0010467,GO:0010498,GO:0010564,GO:0010638,GO:0010965,GO:0015630,GO:0016043,GO:0016070,GO:0016071,GO:0016192,GO:0016567,GO:0016740,GO:0017156,GO:0019538,GO:0019787,GO:0019899,GO:0019902,GO:0019903,GO:0019941,GO:0019953,GO:0022402,GO:0022414,GO:0022622,GO:0030071,GO:0030154,GO:0030163,GO:0031145,GO:0031331,GO:0031461,GO:0031974,GO:0031981,GO:0032270,GO:0032436,GO:0032446,GO:0032501,GO:0032502,GO:0032940,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034399,GO:0034641,GO:0036211,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0043900,GO:0043901,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044784,GO:0045055,GO:0045732,GO:0045786,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045930,GO:0045931,GO:0046483,GO:0046903,GO:0048285,GO:0048316,GO:0048364,GO:0048507,GO:0048508,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048532,GO:0048608,GO:0048731,GO:0048829,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051247,GO:0051276,GO:0051301,GO:0051603,GO:0051704,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060467,GO:0060468,GO:0060471,GO:0061458,GO:0061630,GO:0061659,GO:0062033,GO:0065001,GO:0065007,GO:0070013,GO:0070647,GO:0070979,GO:0071704,GO:0071840,GO:0071849,GO:0071850,GO:0071851,GO:0080154,GO:0090068,GO:0090304,GO:0090421,GO:0097159,GO:0098813,GO:0099402,GO:0140014,GO:0140096,GO:1901360,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903047,GO:1903052,GO:1903364,GO:1905392,GO:1905818,GO:1905820,GO:1990234,GO:2000241,GO:2000242,GO:2001252
EggNOG free text desc.Tetratricopeptide repeat
EggNOG OGs2XCC8@2836,COG0457@1,KOG1126@2759
COG Functional cat.D
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009,ko03036,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size129
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925335.7230897-UTR-S-dermatodea_contig83217:127..1541622925335.7230897-UTR-S-dermatodea_contig83217:127..154Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig83217 128..154 +
1694079863.6461747-UTR-S-dermatodea_contig83217:127..1541694079863.6461747-UTR-S-dermatodea_contig83217:127..154Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig83217 128..154 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925335.7340877-CDS-S-dermatodea_contig83217:154..2831622925335.7340877-CDS-S-dermatodea_contig83217:154..283Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83217 155..283 +
1694079863.6636198-CDS-S-dermatodea_contig83217:154..2831694079863.6636198-CDS-S-dermatodea_contig83217:154..283Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83217 155..283 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig83217.16508.1prot_S-dermatodea_contig83217.16508.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig83217 155..283 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig83217.16508.1

>prot_S-dermatodea_contig83217.16508.1 ID=prot_S-dermatodea_contig83217.16508.1|Name=mRNA_S-dermatodea_contig83217.16508.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=43bp
MAIRTDRRHYNAWYGLGSIYHRQEKYDMAEYHFRRALSINPQS
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mRNA from alignment at S-dermatodea_contig83217:128..283+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig83217.16508.1 ID=mRNA_S-dermatodea_contig83217.16508.1|Name=mRNA_S-dermatodea_contig83217.16508.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=156bp|location=Sequence derived from alignment at S-dermatodea_contig83217:128..283+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGGTTGCAGGCCGTGGCGTGTTTCCGAATGGCGATCAGAACGGACAGACG
GCACTACAACGCGTGGTACGGCCTGGGTTCGATCTACCATCGTCAAGAAA
AGTACGACATGGCGGAGTACCACTTCCGAAGAGCTCTCAGCATAAACCCT
CAGTCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig83217:128..283+

>mRNA_S-dermatodea_contig83217.16508.1 ID=mRNA_S-dermatodea_contig83217.16508.1|Name=mRNA_S-dermatodea_contig83217.16508.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=258bp|location=Sequence derived from alignment at S-dermatodea_contig83217:128..283+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGATCAGAACGGACAGACGGCACTACAACGCGTGGTACGGCCTGGG
TTCGATCTACCATCGTCAAGAAAAGTACGACATGGCGGAGTACCACTTCC
GAAGAGCTCTCAGCATAAACCCTCAGTCCATGGCGATCAGAACGGACAGA
CGGCACTACAACGCGTGGTACGGCCTGGGTTCGATCTACCATCGTCAAGA
AAAGTACGACATGGCGGAGTACCACTTCCGAAGAGCTCTCAGCATAAACC
CTCAGTCC
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