mRNA_S-dermatodea_contig8318.16503.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8318.16503.1
Unique NamemRNA_S-dermatodea_contig8318.16503.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8318.16503.1 vs. uniprot
Match: A0A6H5K6L4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L4_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 7.190e-5
Identity = 23/28 (82.14%), Postives = 25/28 (89.29%), Query Frame = 1 
Query:    1 GIDEHAGPSLHRVQATGAFQRYRTVAAG 84
            G+D+HAG SLHRVQATGAFQRYR  AAG
Sbjct:   34 GVDDHAGASLHRVQATGAFQRYRAFAAG 61
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8318.16503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K6L4_9PHAE7.190e-582.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8318contigS-dermatodea_contig8318:4344..4869 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size526
Cds size525
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925335.222406-CDS-S-dermatodea_contig8318:4343..48681622925335.222406-CDS-S-dermatodea_contig8318:4343..4868Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8318 4344..4868 +
1694079863.3134305-CDS-S-dermatodea_contig8318:4343..48681694079863.3134305-CDS-S-dermatodea_contig8318:4343..4868Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8318 4344..4868 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8318.16503.1prot_S-dermatodea_contig8318.16503.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8318 4344..4868 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8318.16503.1

>prot_S-dermatodea_contig8318.16503.1 ID=prot_S-dermatodea_contig8318.16503.1|Name=mRNA_S-dermatodea_contig8318.16503.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=175bp
GIDEHAGPSLHRVQATGAFQRYRTVAAGGRAEAVNARLSQDPPAPKTTAV
EAGEAFRPRGRSVGIPGSPGDDHDANGAVPSAKGDTNGGDDCEGTGGDSP
GAERGGVGDATAAATAVGDGEAVPAAVEQGASYANEIRRRKWRGAEQELL
PLAPEQRATLKRALSALRETADDGD
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mRNA from alignment at S-dermatodea_contig8318:4344..4869+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8318.16503.1 ID=mRNA_S-dermatodea_contig8318.16503.1|Name=mRNA_S-dermatodea_contig8318.16503.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=526bp|location=Sequence derived from alignment at S-dermatodea_contig8318:4344..4869+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGAATCGACGAACACGCGGGGCCGAGCCTTCACCGGGTGCAGGCAACAGG
GGCATTCCAGCGCTACCGTACGGTTGCCGCAGGCGGGAGGGCGGAGGCAG
TCAACGCGCGCCTGTCGCAAGACCCGCCAGCACCGAAGACCACAGCAGTA
GAGGCAGGCGAGGCGTTTCGACCCCGGGGAAGATCGGTGGGTATCCCCGG
GTCCCCGGGCGATGACCACGACGCAAATGGTGCCGTTCCGAGCGCCAAGG
GGGATACCAATGGCGGGGATGATTGTGAGGGTACAGGCGGCGACAGCCCT
GGCGCGGAGAGGGGGGGCGTTGGAGACGCGACCGCAGCCGCAACAGCAGT
GGGAGATGGGGAAGCAGTACCAGCAGCGGTAGAGCAAGGGGCTTCATACG
CAAACGAGATTCGGCGGCGGAAGTGGCGAGGGGCGGAGCAAGAGCTGTTA
CCGCTAGCGCCCGAGCAACGCGCGACCCTGAAGCGGGCGCTATCAGCCCT
GCGGGAAACCGCTGATGACGGCGACC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8318:4344..4869+

>mRNA_S-dermatodea_contig8318.16503.1 ID=mRNA_S-dermatodea_contig8318.16503.1|Name=mRNA_S-dermatodea_contig8318.16503.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1050bp|location=Sequence derived from alignment at S-dermatodea_contig8318:4344..4869+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGAATCGACGAACACGCGGGGCCGAGCCTTCACCGGGTGCAGGCAACAGG
GGCATTCCAGCGCTACCGTACGGTTGCCGCAGGCGGGAGGGCGGAGGCAG
TCAACGCGCGCCTGTCGCAAGACCCGCCAGCACCGAAGACCACAGCAGTA
GAGGCAGGCGAGGCGTTTCGACCCCGGGGAAGATCGGTGGGTATCCCCGG
GTCCCCGGGCGATGACCACGACGCAAATGGTGCCGTTCCGAGCGCCAAGG
GGGATACCAATGGCGGGGATGATTGTGAGGGTACAGGCGGCGACAGCCCT
GGCGCGGAGAGGGGGGGCGTTGGAGACGCGACCGCAGCCGCAACAGCAGT
GGGAGATGGGGAAGCAGTACCAGCAGCGGTAGAGCAAGGGGCTTCATACG
CAAACGAGATTCGGCGGCGGAAGTGGCGAGGGGCGGAGCAAGAGCTGTTA
CCGCTAGCGCCCGAGCAACGCGCGACCCTGAAGCGGGCGCTATCAGCCCT
GCGGGAAACCGCTGATGACGGCGACGGAATCGACGAACACGCGGGGCCGA
GCCTTCACCGGGTGCAGGCAACAGGGGCATTCCAGCGCTACCGTACGGTT
GCCGCAGGCGGGAGGGCGGAGGCAGTCAACGCGCGCCTGTCGCAAGACCC
GCCAGCACCGAAGACCACAGCAGTAGAGGCAGGCGAGGCGTTTCGACCCC
GGGGAAGATCGGTGGGTATCCCCGGGTCCCCGGGCGATGACCACGACGCA
AATGGTGCCGTTCCGAGCGCCAAGGGGGATACCAATGGCGGGGATGATTG
TGAGGGTACAGGCGGCGACAGCCCTGGCGCGGAGAGGGGGGGCGTTGGAG
ACGCGACCGCAGCCGCAACAGCAGTGGGAGATGGGGAAGCAGTACCAGCA
GCGGTAGAGCAAGGGGCTTCATACGCAAACGAGATTCGGCGGCGGAAGTG
GCGAGGGGCGGAGCAAGAGCTGTTACCGCTAGCGCCCGAGCAACGCGCGA
CCCTGAAGCGGGCGCTATCAGCCCTGCGGGAAACCGCTGATGACGGCGAC
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