mRNA_S-dermatodea_contig830.16486.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig830.16486.1
Unique NamemRNA_S-dermatodea_contig830.16486.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig830.16486.1 vs. uniprot
Match: A0A6H5L0D3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0D3_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 4.900e-11
Identity = 39/56 (69.64%), Postives = 42/56 (75.00%), Query Frame = 3 
Query:  204 SHHVLQATPGDRAFKP--LPNLAQAEFPKLRDEPYDLVVLGSGPGGEAAAVQAARL 365
            S HVL+      A K   LP+LAQ EFP L D+PYDLVVLGSGPGGEAAAVQAARL
Sbjct:   34 SEHVLERKKHVLAAKRDVLPDLAQQEFPPLPDKPYDLVVLGSGPGGEAAAVQAARL 89
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BLAST of mRNA_S-dermatodea_contig830.16486.1 vs. uniprot
Match: A0A7S1TRI9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TRI9_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 4.870e-7
Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 3 
Query:  252 LPNLAQAEFPKLR--DEPYDLVVLGSGPGGEAAAVQAARL 365
            LP+L+Q +FP +   DEPYDLVV+GSGPGGEAAA +AA+L
Sbjct:   74 LPDLSQKDFPPVPPDDEPYDLVVIGSGPGGEAAATRAAQL 113
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BLAST of mRNA_S-dermatodea_contig830.16486.1 vs. uniprot
Match: A0A7S2Y1R6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1R6_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 6.430e-6
Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = 3 
Query:  252 LPNLAQAEFPKLRDEPYDLVVLGSGPGGEAAAVQAARL 365
            LP+L+QA FP+ R EPYDL+V+G GPGGEAAAV AA+L
Sbjct:   44 LPDLSQASFPE-RYEPYDLLVIGCGPGGEAAAVNAAKL 80
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BLAST of mRNA_S-dermatodea_contig830.16486.1 vs. uniprot
Match: A0A7R9U251_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U251_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 2.990e-5
Identity = 26/40 (65.00%), Postives = 33/40 (82.50%), Query Frame = 3 
Query:  252 LPNLAQAEFPKLR--DEPYDLVVLGSGPGGEAAAVQAARL 365
            LP+L+Q +FP +   DEP+DLVV+GSGPGGEAAA +AA L
Sbjct:   73 LPDLSQKDFPPVPPDDEPFDLVVVGSGPGGEAAAARAAAL 112
[Close]
BLAST of mRNA_S-dermatodea_contig830.16486.1 vs. uniprot
Match: A0A836CAQ8_9STRA (Pyr_redox_2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAQ8_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 5.500e-5
Identity = 23/38 (60.53%), Postives = 31/38 (81.58%), Query Frame = 3 
Query:  252 LPNLAQAEFPKLRDEPYDLVVLGSGPGGEAAAVQAARL 365
            L +L+Q+ FP + ++ YDLVVLGSGPGGEA A +AA+L
Sbjct:    4 LRDLSQSAFPDVPEDGYDLVVLGSGPGGEAIATRAAQL 41
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig830.16486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L0D3_9PHAE4.900e-1169.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1TRI9_9STRA4.870e-767.50Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S2Y1R6_9STRA6.430e-671.05Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9U251_9STRA2.990e-565.00Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A836CAQ8_9STRA5.500e-560.53Pyr_redox_2 domain-containing protein (Fragment) n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig830contigS-dermatodea_contig830:4698..8689 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons2
Model size366
Cds size303
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig830.16486.1prot_S-dermatodea_contig830.16486.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig830 4698..8627 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925334.3552191-CDS-S-dermatodea_contig830:4697..47931622925334.3552191-CDS-S-dermatodea_contig830:4697..4793Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig830 4698..4793 -
1694079862.8377209-CDS-S-dermatodea_contig830:4697..47931694079862.8377209-CDS-S-dermatodea_contig830:4697..4793Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig830 4698..4793 -
1622925334.3652802-CDS-S-dermatodea_contig830:8420..86271622925334.3652802-CDS-S-dermatodea_contig830:8420..8627Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig830 8421..8627 -
1694079862.847213-CDS-S-dermatodea_contig830:8420..86271694079862.847213-CDS-S-dermatodea_contig830:8420..8627Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig830 8421..8627 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925334.3792236-UTR-S-dermatodea_contig830:8627..86891622925334.3792236-UTR-S-dermatodea_contig830:8627..8689Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig830 8628..8689 -
1694079862.86009-UTR-S-dermatodea_contig830:8627..86891694079862.86009-UTR-S-dermatodea_contig830:8627..8689Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig830 8628..8689 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig830.16486.1

>prot_S-dermatodea_contig830.16486.1 ID=prot_S-dermatodea_contig830.16486.1|Name=mRNA_S-dermatodea_contig830.16486.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=101bp
MRKFVLFLSLAELSIAFRPLAHSGGRPTRPQQSQDPATSSSSSTRPGSHH
VLQATPGDRAFKPLPNLAQAEFPKLRDEPYDLVVLGSGPGGEAAAVQAAR
L
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mRNA from alignment at S-dermatodea_contig830:4698..8689-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig830.16486.1 ID=mRNA_S-dermatodea_contig830.16486.1|Name=mRNA_S-dermatodea_contig830.16486.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3992bp|location=Sequence derived from alignment at S-dermatodea_contig830:4698..8689- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCCCTAGCTAGCCCTGGGTGCTTCCGAGCTTTGTGCACAGCGCCCTGAG
CGTTCACAAAGCATGCGGAAGTTCGTGCTCTTTCTCTCCCTTGCGGAGCT
CTCGATTGCGTTCCGGCCGTTGGCCCACAGCGGGGGTAGACCAACGAGAC
CGCAACAATCGCAAGACCCCGCCACCTCGAGCAGCAGCAGCACCAGGCCT
GGATCGCATCATGTTCTGCAAGCTACGCCTGGAGACCGCGCCTTCAAGCC
GCTGCCAAACCTCGCCCAGGTGATTTGATTATTCACGCGAGAGGGGGCTG
CAGGGGCTCCGGCGGCTGTGGTGGTGTCAGTCGCGAGGTTTGCTGCTCTC
GTGCCTGGCGTTGGCTTTCCCCCCCCCTATCATGACAACGCGCATTCCGT
GTACTTGAACTTCGAACGTTCACGTCGTCATGCGAAGGGGCTGGACCTTT
GGAAAATGACCTATACTTAATATATATGATATACATAGTATAGGTCTTTT
TCCAAAGGGCTGGACTCCGTACCACCAGACCGGTGGTGCCCTACATATGG
TCCCGAGGCACTTGCGGGTGCCTGGCTCTACAGCGGTAGAGTGGTGCCGG
TCTGCATGCGATGAATGGGTAGTGGGCGGGCTGTCCAGTGACCAGTGACA
ATTATATAGAGACAACAGTCAGTGTACTTCTTGTACAAGTAAATACTACA
AGTAGTCAAATCGGAAACATGCACATGATGATATTACACATATCATACTT
CGAAGTATACTCGTATGCATGGCCTGCCGAGAGCATACATGCACGGCCTG
CCCAGAGCAGATATTAGTATGATAGACAAACGATGTGACACGAAGTTGAA
CCAAAGTTGCTAGATTTTGTTTGTTATAAATATAAATTATTTATATGATA
CAATATCCATACTGCTATGTACAAGTAGTAGCCTTCACGTCGGAAACACT
TCGTTGTAAGTGCGCCGCTCTCGTCCGTAAGAGCTATTATTGTACCTGGT
CCAGCAGTATGTATACATTATATTGAGTACTGAGTGCAGCTTGGGTGTGA
ACGATGAGGCATGCGCTCTTTGGCGCTCTTGGCGTACCGATCTATTAATA
CGAGTACACTGGAAAGTGGCGCTTGCTTCCACACAAGAGGTTGTGTTCAC
GAGAGCTATCATACTCAGCAGTGCCGCACAGCAATTCTTACAGCAGTACC
AACGTCAAAAGGTCTATTAAATACGTTGCATTTAATATTAGTAGTGTGAT
GTTATTACGTCAGGCGTTCTCTTCTGGGGCGACGTGAGGTAATATCTTGT
CATGTCTGTACATCACATTTTTTTTCGGTGTCTATGATAGAGGTGCTGGA
TCTGGATCCCACTTGCTCTTGTGCCTTCATGTCACCACGAGTTAGCGGGA
TCGGTATGATAACCATTTTTGCAATTGCCAATAATGGCGAACCGGTCGGG
TATACAGGTACATGGGACAAATCGATACAAAAATATTAAAAACCACGTCT
CATATGTACGTACAGCAGTAAGTAGAGTTTTGGCACTCGGTCGACTCGCC
CAAGGAAACCCTTTTTTCTTTTTTCCGCTTGGGAATGTTCTGAGGTTTCT
CAGTCTTTGTGCAAACGCGGCGTAGCGGCCGCGTTTGAGCGCTGCAGGCC
TCGGTTGGAGGTTCCGAGGGGCGGTATGGGTTGGTGTTAGGGTTAGAGTT
GGGGTGTTTCGGTCGACACCTGAGGCCCCATGTCAGCGCGTACAAAAAAA
CAAACACACACACACGCGCGCACAAGTACCCTTGGAAGATGCAGTCGACT
GCTGTATGGTAAACAGCCCCCCATACATGCATGCAGTGTGTGTCATACTT
GTACGACAGGAGTTTTAGTTGTCCTGTGTTGCTGCTCTCTCTCGTCGTAG
ATGGCAGAGTGCAAACGACAGGTCGGCAGTTGCAACCTCGCGCGGTCTCT
ATTGCTGTGTTGGGCCAAGTGCGGGATCGCGGCACCGCACCGAAACCCTT
CAGACCGACCGCGGCCGCCATCGGTGGGGTTCCAACAGACACGATGAACC
GAGAGAAGTGCGGTGTGTTTAGCACAATCAGATAATTTCATGGCCTGGGT
AAGGCCTGGGCAAGGCCTGCCGGGGGCGCCACTGGGCCAGCCACGGACCG
AAGGCCGTCATCTACGGCTTGCCGTCGTCAGGAGTCGTCCGATGTAGAGC
GGTGTGTCGGAGCGCTCTCCGGGCTGCACGGCGCCTCCTGCACGCTCGCG
CTCTCGATGTCGCGAAGTACTAAATCCGAGTTGCTAAAAGCGAAATGAAC
AACTGAGCAGAATGTCCGTTTCGCCAAGCGCGACAGAACGCCTCCTTAGG
AACGTCGCAAGGGTTTCGCACCTTTCGAAGGCGTAGGCTCGATACTTAAA
CTGACCTCATATATTTCTCTGGAGCACTGATCTATCCCTTTTTTTTTCCC
GCCCCTGCAAAGTCGCGTGAACTATCTCGTCAAAGCGCCCACCAAGCCCT
GCGCCGCGCCCGCAGAAAAGAGCTGGCACACATTCTGCACACAGCACAAC
AGCAGAAACAAACCAGTGCAGTAAGACAAGCCCACATCGCAGCTTGGTGG
GGCACATACTCACCTGCCTCAACGGACCACATACGTCGACTGTCACGCCC
CTGGCAGAATTACCTGGGTATCCATCACCCCAACAAAACGTCAGTGGACC
GTCACGATGCCACGATTCGCGGCCGGGGTGGATGATGGCCGATGATGCCC
GGCAGTTTTGCGGCAGCTTCCACACACACACACACACACACACGCCCCCC
CCCGCGCGCGCGACGTTGGCGAGGCACCTGGCAAAGGCCTTCGTTCCCTG
TTGTTCGTCGGCAAGCGCCATGGGGGTGCTTAATTTCCCTCCGAACCGGT
ATGCGCCCAAACCCTGAAGGACGCCGCCGATGGCGTGCCAGCAAAGCCAT
CCCACCCGTGGCACAAAGTTAATGTGAAGAATTGAAATCTGTATTCTGTA
TGAGAGAGAGAGAGTATCGGTCATTTGCACCCCCAGATAAGTTCATCGGG
GAACGTTCCGAGAACCCTTCCAGATAATATTACGATTGCATTGCCCCCGA
GAGAGTGTAGCCGCATTAGCCAGTCTGCGTTGGAGCTACACAGAGGCGTG
GGCGCTCAGGCTAGCGCACAACGCAAGAAGGTTGGTCCGGGGGAGCAACC
GCTGCTTGGACATCAGGCTGCTGCTGTTCGTTGGTTCATTCATTTATAAG
TTACTGTTCCCGGTTTCGCGCGAAAACGACGGCTTAAAAAATTACTGCTG
CTCAAACCCTCTCTTGGGATGTACGTATGCTTGTATGCAAAGGGATCATC
CCAGGGTACATTTCCCGTGGTGAGAGTTGTGACGCGTGGAGTTACGTAGG
TGAGACCACACAACTCTCTGCTGTCGTAGGTTAGTTCATACCAGGTACTA
GCTATGGCTCTCGCCCCCCCTGAAACAATAGACGATTTCAAAAACATGTG
AGCCGAGCGTTGGGGCCCAACGTTTTTGAAGCAAGGAAATGTAGTCCAAG
CTACTATTTACTATACAAAACGTCTACCAGGTATTTATGAAGATTCACAT
CACGTATGATGCTATGATTTGGTTTTACGATATGTATGATGCTGCGATAG
AGCTATGGAATCATCGTGAAATTGTCTCTTTTCTGGGCGATATCATCGTA
TCATCGCGTCACTCTGATTTTGCATGCTTTGTGAATCAAGAACCCCCCCC
GGCCCCCCGCGCCTGGTCCGGCAAAAACCCGGCGTGCTCCGTCCCGGCTT
TGTAAGGATGCGAGGTCTGTGGCCTAACGACTACGGCATGCACGATCAAT
GAGTACACCCCCCCGCCCCCCGCCCCCCCCTCCATCTATATCGCAGGCAG
AGTTCCCTAAACTTCGCGACGAACCCTACGACCTAGTCGTGCTGGGCTCG
GGCCCCGGCGGGGAGGCGGCGGCGGTACAGGCGGCGAGACTC
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Coding sequence (CDS) from alignment at S-dermatodea_contig830:4698..8689-

>mRNA_S-dermatodea_contig830.16486.1 ID=mRNA_S-dermatodea_contig830.16486.1|Name=mRNA_S-dermatodea_contig830.16486.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at S-dermatodea_contig830:4698..8689- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGGAAGTTCGTGCTCTTTCTCTCCCTTGCGGAGCTCTCGATTGCGTT
CCGGCCGTTGGCCCACAGCGGGGGTAGACCAACGAGACCGCAACAATCGC
AAGACCCCGCCACCTCGAGCAGCAGCAGCACCAGGCCTGGATCGCATCAT
GTTCTGCAAGCTACGCCTGGAGACCGCGCCTTCAAGCCGCTGCCAAACCT
CGCCCAGATGCGGAAGTTCGTGCTCTTTCTCTCCCTTGCGGAGCTCTCGA
TTGCGTTCCGGCCGTTGGCCCACAGCGGGGGTAGACCAACGAGACCGCAA
CAATCGCAAGACCCCGCCACCTCGAGCAGCAGCAGCACCAGGCCTGGATC
GCATCATGTTCTGCAAGCTACGCCTGGAGACCGCGCCTTCAAGCCGCTGC
CAAACCTCGCCCAGGCAGAGTTCCCTAAACTTCGCGACGAACCCTACGAC
CTAGTCGTGCTGGGCTCGGGCCCCGGCGGGGAGGCGGCGGCGGTACAGGC
GGCGAGACTCGCAGAGTTCCCTAAACTTCGCGACGAACCCTACGACCTAG
TCGTGCTGGGCTCGGGCCCCGGCGGGGAGGCGGCGGCGGTACAGGCGGCG
AGACTC
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