mRNA_S-dermatodea_contig8284.16473.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig8284.16473.1 vs. uniprot
Match: A0A835YRJ7_9STRA (Glycine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRJ7_9STRA) HSP 1 Score: 159 bits (402), Expect = 1.230e-44 Identity = 73/89 (82.02%), Postives = 80/89 (89.89%), Query Frame = 1
Query: 1 DVHGDGSLAHYAKACTDITFKFPFGESELQGVAARGCYDLTQHQEASGKSMEYFDDRSKTKYVPHVIEPSLGVDRLFLAVMVSAYHEDE 267
DVH LAHYA+ACTDITF+FPFG+SELQGVAARG YDLTQHQEASGK MEYFD+ +K KYVPHVIEPSLGVDRLFLA++ SAYHEDE
Sbjct: 294 DVHEAHKLAHYARACTDITFRFPFGQSELQGVAARGAYDLTQHQEASGKGMEYFDEATKRKYVPHVIEPSLGVDRLFLALLTSAYHEDE 382
BLAST of mRNA_S-dermatodea_contig8284.16473.1 vs. uniprot
Match: A0A7S3AL73_9EUKA (Glycine--tRNA ligase n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AL73_9EUKA) HSP 1 Score: 149 bits (376), Expect = 3.030e-43 Identity = 70/90 (77.78%), Postives = 75/90 (83.33%), Query Frame = 1
Query: 1 DVHGDGSLAHYAKACTDITFKFPFGESELQGVAARGCYDLTQHQEASGKSMEYFDDRSKTKYVPHVIEPSLGVDRLFLAVMVSAYHEDEV 270
DVH LAHYA+ACTDI FKFPFG ELQGVAARGC+DLTQH ASGKSMEY+DD K KYVPHVIEPS+GVDRL LAV+ SAY EDEV
Sbjct: 42 DVHPSHKLAHYARACTDIMFKFPFGTQELQGVAARGCFDLTQHAGASGKSMEYYDDVRKEKYVPHVIEPSIGVDRLMLAVLCSAYKEDEV 131
BLAST of mRNA_S-dermatodea_contig8284.16473.1 vs. uniprot
Match: A0A6U1N9R4_9STRA (Glycine--tRNA ligase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1N9R4_9STRA) HSP 1 Score: 153 bits (386), Expect = 2.160e-42 Identity = 69/90 (76.67%), Postives = 80/90 (88.89%), Query Frame = 1
Query: 1 DVHGDGSLAHYAKACTDITFKFPFGESELQGVAARGCYDLTQHQEASGKSMEYFDDRSKTKYVPHVIEPSLGVDRLFLAVMVSAYHEDEV 270
+VH D LAHYA+ACTDITFKFPFGESELQG+AARGCYDLTQHQE SGKS+EY + +K K++PHVIEPSLGVDRL LA++ SAYH+DEV
Sbjct: 294 EVHADDKLAHYARACTDITFKFPFGESELQGIAARGCYDLTQHQEGSGKSLEYQVEGTKDKFLPHVIEPSLGVDRLLLALICSAYHKDEV 383
BLAST of mRNA_S-dermatodea_contig8284.16473.1 vs. uniprot
Match: A0A7R9YDS6_9STRA (Glycine--tRNA ligase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDS6_9STRA) HSP 1 Score: 152 bits (385), Expect = 5.690e-42 Identity = 70/90 (77.78%), Postives = 79/90 (87.78%), Query Frame = 1
Query: 1 DVHGDGSLAHYAKACTDITFKFPFGESELQGVAARGCYDLTQHQEASGKSMEYFDDRSKTKYVPHVIEPSLGVDRLFLAVMVSAYHEDEV 270
DVH D LAHYA+ACTDITFKFPFGESELQG+AARG YDL HQ +SGKS EYFD+ +K KYVPHVIEPS+GV+RLFLA++ SAYHEDEV
Sbjct: 329 DVHEDCDLAHYARACTDITFKFPFGESELQGIAARGDYDLNAHQGSSGKSQEYFDEANKRKYVPHVIEPSIGVERLFLALVCSAYHEDEV 418
BLAST of mRNA_S-dermatodea_contig8284.16473.1 vs. uniprot
Match: A0A7S0I0N9_9EUKA (Glycine--tRNA ligase n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0I0N9_9EUKA) HSP 1 Score: 145 bits (365), Expect = 8.730e-42 Identity = 69/90 (76.67%), Postives = 74/90 (82.22%), Query Frame = 1
Query: 1 DVHGDGSLAHYAKACTDITFKFPFGESELQGVAARGCYDLTQHQEASGKSMEYFDDRSKTKYVPHVIEPSLGVDRLFLAVMVSAYHEDEV 270
DVH LAHYA+ACTDI F+FPFG+ ELQGVAARG YDLTQH ASGKSMEYFDD K KYVPHVIEPS+GVDRL LAV+ SAY DEV
Sbjct: 24 DVHAKDKLAHYAQACTDIEFQFPFGKQELQGVAARGNYDLTQHAAASGKSMEYFDDALKEKYVPHVIEPSIGVDRLMLAVLTSAYCTDEV 113
BLAST of mRNA_S-dermatodea_contig8284.16473.1 vs. uniprot
Match: A0A1G3Z6K9_9BACT (Glycine--tRNA ligase n=1 Tax=Verrucomicrobia bacterium GWC2_42_7 TaxID=1802430 RepID=A0A1G3Z6K9_9BACT) HSP 1 Score: 151 bits (381), Expect = 1.280e-41 Identity = 64/90 (71.11%), Postives = 79/90 (87.78%), Query Frame = 1
Query: 1 DVHGDGSLAHYAKACTDITFKFPFGESELQGVAARGCYDLTQHQEASGKSMEYFDDRSKTKYVPHVIEPSLGVDRLFLAVMVSAYHEDEV 270
DVH LAHY++ACTDITFK+PFG EL+G+AARGC+DLTQHQEASGKS+EYFD+ K KY+PHVIEP++GVDR+FLA++ SAY EDE+
Sbjct: 302 DVHPKNKLAHYSRACTDITFKYPFGVQELEGIAARGCFDLTQHQEASGKSLEYFDEEKKAKYLPHVIEPAVGVDRIFLAILCSAYDEDEI 391
BLAST of mRNA_S-dermatodea_contig8284.16473.1 vs. uniprot
Match: A0A7R9WRX3_9STRA (Glycine--tRNA ligase n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WRX3_9STRA) HSP 1 Score: 144 bits (364), Expect = 6.300e-41 Identity = 64/90 (71.11%), Postives = 77/90 (85.56%), Query Frame = 1
Query: 1 DVHGDGSLAHYAKACTDITFKFPFGESELQGVAARGCYDLTQHQEASGKSMEYFDDRSKTKYVPHVIEPSLGVDRLFLAVMVSAYHEDEV 270
DVH SLAHYA+ACTD+TF+FPFGE EL G+AARG +DLTQH E SGKS+++FDD++K KY+PH IEPSLGVDRL LA++ SAY EDEV
Sbjct: 85 DVHEGDSLAHYARACTDVTFRFPFGEQELMGIAARGNFDLTQHSEGSGKSLDFFDDQTKEKYIPHCIEPSLGVDRLMLALICSAYAEDEV 174
BLAST of mRNA_S-dermatodea_contig8284.16473.1 vs. uniprot
Match: W7TM99_9STRA (Glycine--tRNA ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TM99_9STRA) HSP 1 Score: 150 bits (378), Expect = 9.090e-41 Identity = 68/90 (75.56%), Postives = 79/90 (87.78%), Query Frame = 1
Query: 1 DVHGDGSLAHYAKACTDITFKFPFGESELQGVAARGCYDLTQHQEASGKSMEYFDDRSKTKYVPHVIEPSLGVDRLFLAVMVSAYHEDEV 270
DVH G LAHYAKACTDI F+FPFG+ ELQG+AARG YDLTQHQ +SGKSMEYFD+ +K +YVPHVIEPS+GVDRLFLA++ SAY EDE+
Sbjct: 381 DVHLKGDLAHYAKACTDIVFRFPFGQVELQGIAARGDYDLTQHQTSSGKSMEYFDEANKRRYVPHVIEPSIGVDRLFLALICSAYAEDEI 470
BLAST of mRNA_S-dermatodea_contig8284.16473.1 vs. uniprot
Match: A0A7S3HM11_9STRA (Glycine--tRNA ligase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HM11_9STRA) HSP 1 Score: 141 bits (355), Expect = 1.490e-40 Identity = 64/87 (73.56%), Postives = 73/87 (83.91%), Query Frame = 1
Query: 4 VHGDGSLAHYAKACTDITFKFPFGESELQGVAARGCYDLTQHQEASGKSMEYFDDRSKTKYVPHVIEPSLGVDRLFLAVMVSAYHED 264
VH D LAHYA+ACTDITF++PFG EL GVAARG YDLTQH ASGK++EYFD + TKY+PHVIEPSLGVDRLFLAV+ SAY E+
Sbjct: 107 VHSDNKLAHYARACTDITFRYPFGTQELMGVAARGNYDLTQHMAASGKNLEYFDALTNTKYLPHVIEPSLGVDRLFLAVLCSAYREE 193
BLAST of mRNA_S-dermatodea_contig8284.16473.1 vs. uniprot
Match: A0A7S4IYG8_9EUKA (Glycine--tRNA ligase n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4IYG8_9EUKA) HSP 1 Score: 146 bits (368), Expect = 1.490e-40 Identity = 67/90 (74.44%), Postives = 75/90 (83.33%), Query Frame = 1
Query: 1 DVHGDGSLAHYAKACTDITFKFPFGESELQGVAARGCYDLTQHQEASGKSMEYFDDRSKTKYVPHVIEPSLGVDRLFLAVMVSAYHEDEV 270
DVH D LAHYA+ACTDI FKFPFG ELQGVAARGC+DL+ H +ASGKSMEY+D+ K KYVPHVIEPS+GVDRL LAV+ SAY DEV
Sbjct: 188 DVHADHKLAHYARACTDIMFKFPFGTQELQGVAARGCFDLSAHADASGKSMEYYDEERKEKYVPHVIEPSIGVDRLMLAVLTSAYCIDEV 277 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8284.16473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig8284.16473.1 >prot_S-dermatodea_contig8284.16473.1 ID=prot_S-dermatodea_contig8284.16473.1|Name=mRNA_S-dermatodea_contig8284.16473.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=88bp MGTDHWRTTRRHALTSPSSSRSENPSFRAWRREAATTSPSTRRRAASRWSback to top mRNA from alignment at S-dermatodea_contig8284:8000..9166- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig8284.16473.1 ID=mRNA_S-dermatodea_contig8284.16473.1|Name=mRNA_S-dermatodea_contig8284.16473.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1167bp|location=Sequence derived from alignment at S-dermatodea_contig8284:8000..9166- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig8284:8000..9166- >mRNA_S-dermatodea_contig8284.16473.1 ID=mRNA_S-dermatodea_contig8284.16473.1|Name=mRNA_S-dermatodea_contig8284.16473.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at S-dermatodea_contig8284:8000..9166- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |