mRNA_S-dermatodea_contig8284.16473.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8284.16473.1
Unique NamemRNA_S-dermatodea_contig8284.16473.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig8284.16473.1 vs. uniprot
Match: A0A835YRJ7_9STRA (Glycine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRJ7_9STRA)

HSP 1 Score: 159 bits (402), Expect = 1.230e-44
Identity = 73/89 (82.02%), Postives = 80/89 (89.89%), Query Frame = 1
Query:    1 DVHGDGSLAHYAKACTDITFKFPFGESELQGVAARGCYDLTQHQEASGKSMEYFDDRSKTKYVPHVIEPSLGVDRLFLAVMVSAYHEDE 267
            DVH    LAHYA+ACTDITF+FPFG+SELQGVAARG YDLTQHQEASGK MEYFD+ +K KYVPHVIEPSLGVDRLFLA++ SAYHEDE
Sbjct:  294 DVHEAHKLAHYARACTDITFRFPFGQSELQGVAARGAYDLTQHQEASGKGMEYFDEATKRKYVPHVIEPSLGVDRLFLALLTSAYHEDE 382          
BLAST of mRNA_S-dermatodea_contig8284.16473.1 vs. uniprot
Match: A0A7S3AL73_9EUKA (Glycine--tRNA ligase n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AL73_9EUKA)

HSP 1 Score: 149 bits (376), Expect = 3.030e-43
Identity = 70/90 (77.78%), Postives = 75/90 (83.33%), Query Frame = 1
Query:    1 DVHGDGSLAHYAKACTDITFKFPFGESELQGVAARGCYDLTQHQEASGKSMEYFDDRSKTKYVPHVIEPSLGVDRLFLAVMVSAYHEDEV 270
            DVH    LAHYA+ACTDI FKFPFG  ELQGVAARGC+DLTQH  ASGKSMEY+DD  K KYVPHVIEPS+GVDRL LAV+ SAY EDEV
Sbjct:   42 DVHPSHKLAHYARACTDIMFKFPFGTQELQGVAARGCFDLTQHAGASGKSMEYYDDVRKEKYVPHVIEPSIGVDRLMLAVLCSAYKEDEV 131          
BLAST of mRNA_S-dermatodea_contig8284.16473.1 vs. uniprot
Match: A0A6U1N9R4_9STRA (Glycine--tRNA ligase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1N9R4_9STRA)

HSP 1 Score: 153 bits (386), Expect = 2.160e-42
Identity = 69/90 (76.67%), Postives = 80/90 (88.89%), Query Frame = 1
Query:    1 DVHGDGSLAHYAKACTDITFKFPFGESELQGVAARGCYDLTQHQEASGKSMEYFDDRSKTKYVPHVIEPSLGVDRLFLAVMVSAYHEDEV 270
            +VH D  LAHYA+ACTDITFKFPFGESELQG+AARGCYDLTQHQE SGKS+EY  + +K K++PHVIEPSLGVDRL LA++ SAYH+DEV
Sbjct:  294 EVHADDKLAHYARACTDITFKFPFGESELQGIAARGCYDLTQHQEGSGKSLEYQVEGTKDKFLPHVIEPSLGVDRLLLALICSAYHKDEV 383          
BLAST of mRNA_S-dermatodea_contig8284.16473.1 vs. uniprot
Match: A0A7R9YDS6_9STRA (Glycine--tRNA ligase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDS6_9STRA)

HSP 1 Score: 152 bits (385), Expect = 5.690e-42
Identity = 70/90 (77.78%), Postives = 79/90 (87.78%), Query Frame = 1
Query:    1 DVHGDGSLAHYAKACTDITFKFPFGESELQGVAARGCYDLTQHQEASGKSMEYFDDRSKTKYVPHVIEPSLGVDRLFLAVMVSAYHEDEV 270
            DVH D  LAHYA+ACTDITFKFPFGESELQG+AARG YDL  HQ +SGKS EYFD+ +K KYVPHVIEPS+GV+RLFLA++ SAYHEDEV
Sbjct:  329 DVHEDCDLAHYARACTDITFKFPFGESELQGIAARGDYDLNAHQGSSGKSQEYFDEANKRKYVPHVIEPSIGVERLFLALVCSAYHEDEV 418          
BLAST of mRNA_S-dermatodea_contig8284.16473.1 vs. uniprot
Match: A0A7S0I0N9_9EUKA (Glycine--tRNA ligase n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0I0N9_9EUKA)

HSP 1 Score: 145 bits (365), Expect = 8.730e-42
Identity = 69/90 (76.67%), Postives = 74/90 (82.22%), Query Frame = 1
Query:    1 DVHGDGSLAHYAKACTDITFKFPFGESELQGVAARGCYDLTQHQEASGKSMEYFDDRSKTKYVPHVIEPSLGVDRLFLAVMVSAYHEDEV 270
            DVH    LAHYA+ACTDI F+FPFG+ ELQGVAARG YDLTQH  ASGKSMEYFDD  K KYVPHVIEPS+GVDRL LAV+ SAY  DEV
Sbjct:   24 DVHAKDKLAHYAQACTDIEFQFPFGKQELQGVAARGNYDLTQHAAASGKSMEYFDDALKEKYVPHVIEPSIGVDRLMLAVLTSAYCTDEV 113          
BLAST of mRNA_S-dermatodea_contig8284.16473.1 vs. uniprot
Match: A0A1G3Z6K9_9BACT (Glycine--tRNA ligase n=1 Tax=Verrucomicrobia bacterium GWC2_42_7 TaxID=1802430 RepID=A0A1G3Z6K9_9BACT)

HSP 1 Score: 151 bits (381), Expect = 1.280e-41
Identity = 64/90 (71.11%), Postives = 79/90 (87.78%), Query Frame = 1
Query:    1 DVHGDGSLAHYAKACTDITFKFPFGESELQGVAARGCYDLTQHQEASGKSMEYFDDRSKTKYVPHVIEPSLGVDRLFLAVMVSAYHEDEV 270
            DVH    LAHY++ACTDITFK+PFG  EL+G+AARGC+DLTQHQEASGKS+EYFD+  K KY+PHVIEP++GVDR+FLA++ SAY EDE+
Sbjct:  302 DVHPKNKLAHYSRACTDITFKYPFGVQELEGIAARGCFDLTQHQEASGKSLEYFDEEKKAKYLPHVIEPAVGVDRIFLAILCSAYDEDEI 391          
BLAST of mRNA_S-dermatodea_contig8284.16473.1 vs. uniprot
Match: A0A7R9WRX3_9STRA (Glycine--tRNA ligase n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WRX3_9STRA)

HSP 1 Score: 144 bits (364), Expect = 6.300e-41
Identity = 64/90 (71.11%), Postives = 77/90 (85.56%), Query Frame = 1
Query:    1 DVHGDGSLAHYAKACTDITFKFPFGESELQGVAARGCYDLTQHQEASGKSMEYFDDRSKTKYVPHVIEPSLGVDRLFLAVMVSAYHEDEV 270
            DVH   SLAHYA+ACTD+TF+FPFGE EL G+AARG +DLTQH E SGKS+++FDD++K KY+PH IEPSLGVDRL LA++ SAY EDEV
Sbjct:   85 DVHEGDSLAHYARACTDVTFRFPFGEQELMGIAARGNFDLTQHSEGSGKSLDFFDDQTKEKYIPHCIEPSLGVDRLMLALICSAYAEDEV 174          
BLAST of mRNA_S-dermatodea_contig8284.16473.1 vs. uniprot
Match: W7TM99_9STRA (Glycine--tRNA ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TM99_9STRA)

HSP 1 Score: 150 bits (378), Expect = 9.090e-41
Identity = 68/90 (75.56%), Postives = 79/90 (87.78%), Query Frame = 1
Query:    1 DVHGDGSLAHYAKACTDITFKFPFGESELQGVAARGCYDLTQHQEASGKSMEYFDDRSKTKYVPHVIEPSLGVDRLFLAVMVSAYHEDEV 270
            DVH  G LAHYAKACTDI F+FPFG+ ELQG+AARG YDLTQHQ +SGKSMEYFD+ +K +YVPHVIEPS+GVDRLFLA++ SAY EDE+
Sbjct:  381 DVHLKGDLAHYAKACTDIVFRFPFGQVELQGIAARGDYDLTQHQTSSGKSMEYFDEANKRRYVPHVIEPSIGVDRLFLALICSAYAEDEI 470          
BLAST of mRNA_S-dermatodea_contig8284.16473.1 vs. uniprot
Match: A0A7S3HM11_9STRA (Glycine--tRNA ligase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HM11_9STRA)

HSP 1 Score: 141 bits (355), Expect = 1.490e-40
Identity = 64/87 (73.56%), Postives = 73/87 (83.91%), Query Frame = 1
Query:    4 VHGDGSLAHYAKACTDITFKFPFGESELQGVAARGCYDLTQHQEASGKSMEYFDDRSKTKYVPHVIEPSLGVDRLFLAVMVSAYHED 264
            VH D  LAHYA+ACTDITF++PFG  EL GVAARG YDLTQH  ASGK++EYFD  + TKY+PHVIEPSLGVDRLFLAV+ SAY E+
Sbjct:  107 VHSDNKLAHYARACTDITFRYPFGTQELMGVAARGNYDLTQHMAASGKNLEYFDALTNTKYLPHVIEPSLGVDRLFLAVLCSAYREE 193          
BLAST of mRNA_S-dermatodea_contig8284.16473.1 vs. uniprot
Match: A0A7S4IYG8_9EUKA (Glycine--tRNA ligase n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4IYG8_9EUKA)

HSP 1 Score: 146 bits (368), Expect = 1.490e-40
Identity = 67/90 (74.44%), Postives = 75/90 (83.33%), Query Frame = 1
Query:    1 DVHGDGSLAHYAKACTDITFKFPFGESELQGVAARGCYDLTQHQEASGKSMEYFDDRSKTKYVPHVIEPSLGVDRLFLAVMVSAYHEDEV 270
            DVH D  LAHYA+ACTDI FKFPFG  ELQGVAARGC+DL+ H +ASGKSMEY+D+  K KYVPHVIEPS+GVDRL LAV+ SAY  DEV
Sbjct:  188 DVHADHKLAHYARACTDIMFKFPFGTQELQGVAARGCFDLSAHADASGKSMEYYDEERKEKYVPHVIEPSIGVDRLMLAVLTSAYCIDEV 277          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8284.16473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YRJ7_9STRA1.230e-4482.02Glycine--tRNA ligase n=1 Tax=Tribonema minus TaxID... [more]
A0A7S3AL73_9EUKA3.030e-4377.78Glycine--tRNA ligase n=1 Tax=Haptolina ericina Tax... [more]
A0A6U1N9R4_9STRA2.160e-4276.67Glycine--tRNA ligase n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9YDS6_9STRA5.690e-4277.78Glycine--tRNA ligase n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S0I0N9_9EUKA8.730e-4276.67Glycine--tRNA ligase n=1 Tax=Phaeocystis antarctic... [more]
A0A1G3Z6K9_9BACT1.280e-4171.11Glycine--tRNA ligase n=1 Tax=Verrucomicrobia bacte... [more]
A0A7R9WRX3_9STRA6.300e-4171.11Glycine--tRNA ligase n=1 Tax=Craspedostauros austr... [more]
W7TM99_9STRA9.090e-4175.56Glycine--tRNA ligase n=2 Tax=Monodopsidaceae TaxID... [more]
A0A7S3HM11_9STRA1.490e-4073.56Glycine--tRNA ligase (Fragment) n=1 Tax=Spumella e... [more]
A0A7S4IYG8_9EUKA1.490e-4074.44Glycine--tRNA ligase n=1 Tax=Prymnesium polylepis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8284contigS-dermatodea_contig8284:8000..9166 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size271
Cds size264
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8284.16473.1prot_S-dermatodea_contig8284.16473.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8284 8000..9159 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925333.5129025-CDS-S-dermatodea_contig8284:7999..81801622925333.5129025-CDS-S-dermatodea_contig8284:7999..8180Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8284 8000..8180 -
1694079862.2341776-CDS-S-dermatodea_contig8284:7999..81801694079862.2341776-CDS-S-dermatodea_contig8284:7999..8180Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8284 8000..8180 -
1622925333.526755-CDS-S-dermatodea_contig8284:9076..91591622925333.526755-CDS-S-dermatodea_contig8284:9076..9159Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8284 9077..9159 -
1694079862.2447567-CDS-S-dermatodea_contig8284:9076..91591694079862.2447567-CDS-S-dermatodea_contig8284:9076..9159Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8284 9077..9159 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925333.5400982-UTR-S-dermatodea_contig8284:9159..91661622925333.5400982-UTR-S-dermatodea_contig8284:9159..9166Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8284 9160..9166 -
1694079862.254042-UTR-S-dermatodea_contig8284:9159..91661694079862.254042-UTR-S-dermatodea_contig8284:9159..9166Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8284 9160..9166 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8284.16473.1

>prot_S-dermatodea_contig8284.16473.1 ID=prot_S-dermatodea_contig8284.16473.1|Name=mRNA_S-dermatodea_contig8284.16473.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=88bp
MGTDHWRTTRRHALTSPSSSRSENPSFRAWRREAATTSPSTRRRAASRWS
TSTTGARPNTCRTSSSPRSGWTGFSLPLWCLRTTRMR*
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mRNA from alignment at S-dermatodea_contig8284:8000..9166-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8284.16473.1 ID=mRNA_S-dermatodea_contig8284.16473.1|Name=mRNA_S-dermatodea_contig8284.16473.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1167bp|location=Sequence derived from alignment at S-dermatodea_contig8284:8000..9166- (Saccorhiza dermatodea SderLu1190fm monoicous)
GACGTCCATGGGGACGGATCACTGGCGCACTACGCGAAGGCATGCACTGA CATCACCTTCAAGTTCCCGTTCGGAGAATCCGAGCTTCAGGTTCGTGCCT TCGCCTTTCCCTACCCTTTTGTTTATTTGTAATTTTCTTCACAAATATTG AGTGCCCACTTCCACCTTAAAGGCGATTCGAATAGCGTTGCTTAAGACAA CATTTCCGTTCCGATCCGAACATCCCTGCGGTCAATTTTGCTATAATAAT TAGCCCTTCTAGAGGGTGCGTCGATTTTATTCCAAACATGCGGGAATGGT GGCCAGGTTTACCGCAGGTATCTCCTGAAGCTTTCTGTTGTGTTCTGAAT GCCGGAAAATATAAAAACTTGTCGGTCTCGACGTACCCCTTCCTGGCTCC TTGTCTCCGATTTATTGTCCCAACGCCGACAATTGTGTCCTTCAGACTCC CCCAGTATGTCGACTCCCGCTCCCGTCCGACCTCGTAATTAGGTTAATCC CGTCCTACCCTAAGCTCGGACTCTACCTGTGTGATGCGCATGTCGTTTTG GTTTCGCTACGGTGTACTGTAGTACAGTAGCGAGAAATGGTGTGTCCTCG ATTTCCTTGATTCAGCTATGTTCGGGGCCGCTGAAGGCCGGGTTTTGGTA TCAGTTGTAGCGTGGTCCCATCACCCGTCATCATGACGACAGTCAGTAAC CGTTCTAATCATCACCACCATCACCACCATCACCGTCATCATCAACACCA TCGTCATCACCACCATCATCGTCACCATCATCGCCATCACCTTCATCATC ATTATCACCATCATCATCATCATCATCATCATCGCCACCATCACCGTCAT CATCATGCACCATCATCACCATCATCATCATCATCATCACCGTACTCGTA CTCGTCATTCTTCGTCATCATCACCACCATGACTCTTTCGTCCATGCGTG CTTGTTCTGTCGGACCTCCTGCCCTTTTCCCGGCAGGGCGTGGCGGCGCG AGGCTGCTACGACCTCACCCAGCACCAGGAGGCGAGCGGCAAGTCGATGG AGTACTTCGACGACCGGAGCAAGACCAAATACGTGCCGCACGTCATCGAG CCCTCGCTCGGGGTGGACCGGCTTTTCCTTGCCGTTATGGTGTCTGCGTA CCACGAGGATGAGGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8284:8000..9166-

>mRNA_S-dermatodea_contig8284.16473.1 ID=mRNA_S-dermatodea_contig8284.16473.1|Name=mRNA_S-dermatodea_contig8284.16473.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at S-dermatodea_contig8284:8000..9166- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGGACGGATCACTGGCGCACTACGCGAAGGCATGCACTGACATCACC
TTCAAGTTCCCGTTCGGAGAATCCGAGCTTCAGATGGGGACGGATCACTG
GCGCACTACGCGAAGGCATGCACTGACATCACCTTCAAGTTCCCGTTCGG
AGAATCCGAGCTTCAGGGCGTGGCGGCGCGAGGCTGCTACGACCTCACCC
AGCACCAGGAGGCGAGCGGCAAGTCGATGGAGTACTTCGACGACCGGAGC
AAGACCAAATACGTGCCGCACGTCATCGAGCCCTCGCTCGGGGTGGACCG
GCTTTTCCTTGCCGTTATGGTGTCTGCGTACCACGAGGATGAGGTGAGGC
GTGGCGGCGCGAGGCTGCTACGACCTCACCCAGCACCAGGAGGCGAGCGG
CAAGTCGATGGAGTACTTCGACGACCGGAGCAAGACCAAATACGTGCCGC
ACGTCATCGAGCCCTCGCTCGGGGTGGACCGGCTTTTCCTTGCCGTTATG
GTGTCTGCGTACCACGAGGATGAGGTGA
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