mRNA_S-dermatodea_contig826.16456.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig826.16456.1 vs. uniprot
Match: D8LDZ2_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDZ2_ECTSI) HSP 1 Score: 61.2 bits (147), Expect = 2.710e-6 Identity = 51/140 (36.43%), Postives = 68/140 (48.57%), Query Frame = 3
Query: 126 GFPMLHAAATCVNLIAASTLLAAGADEEATDARGDRALDVVGRPGVHQAVFPPGTKESHYEEYEEKALRRLLQQGPAFRARSWAWPSRKGR-PAIAASAAAVKRPSDPGDKMLPGRVRVRVFRQKEGRSFVRGIARYTRK 542
G P LH AA C +L+AAS LL AGADE + A VG A P K A+ RLL++GPAFRARSWAW + PA + + ++K G + + VR+FR + F +RY +K
Sbjct: 299 GTPALHLAAACESLVAASILLQAGADEGTANGLDKGASCCVG------AALPANKKNPD----TSAAVCRLLERGPAFRARSWAWAAESSEAPAASGTVCSMK-----GGRAT---LDVRIFRPTGNQFFSARFSRYCKK 420
BLAST of mRNA_S-dermatodea_contig826.16456.1 vs. uniprot
Match: D7FLL0_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL0_ECTSI) HSP 1 Score: 60.1 bits (144), Expect = 6.010e-6 Identity = 34/87 (39.08%), Postives = 50/87 (57.47%), Query Frame = 3
Query: 135 MLHAAATCVNLIAASTLLAAGADEEATDARGDRALDVVGRPGVHQ---AVFPPGTKESHYEEYEEKALRRLLQQGPAFRARSWAWPS 386
+LH + + + S LLAAGA+E ATD G R +DV+G + + P T + +E +RR +++ PAFRARSWAWP+
Sbjct: 260 LLHYSCGYILPASVSALLAAGANENATDQAGQRPIDVIGTMDLQNPPLSPLHPRTPTRFRDPVKEAEIRRTVERAPAFRARSWAWPA 346
BLAST of mRNA_S-dermatodea_contig826.16456.1 vs. uniprot
Match: D8LSK4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSK4_ECTSI) HSP 1 Score: 59.3 bits (142), Expect = 1.080e-5 Identity = 48/124 (38.71%), Postives = 60/124 (48.39%), Query Frame = 3
Query: 54 ILLLLLRSRAGGMSPRQLARSRPLGFPMLHAAATCVNLIAASTLLAAGADEEATDARGDRALDVVGRPGVHQAVFPPGTKESHYEEYEEKALRRLLQQGPAFRARSWAWPSRKGRPAIAASAAA 425
IL LLL + R LG P+++ AA L LLAAGADE TD G A +V+G P GT + E A+ R LQ+GPA+RARSWAWP + P + AA
Sbjct: 272 ILRLLLAAEGQERQEHWARRRLVLGRPLVYLAAAYGILANVKVLLAAGADETETDPDGYAAPEVIG------GQLPSGTLDP----LEAAAIGRELQRGPAYRARSWAWPVGEDAPVAGDAGAA 385
BLAST of mRNA_S-dermatodea_contig826.16456.1 vs. uniprot
Match: D8LSK8_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSK8_ECTSI) HSP 1 Score: 58.5 bits (140), Expect = 2.650e-5 Identity = 46/127 (36.22%), Postives = 64/127 (50.39%), Query Frame = 3
Query: 12 EALYAAVMLPAPRTILLLLLRSRAGGMSPRQLARSRPLGFPMLHAAATCVNLIAASTLLAAGADEEATDARGDRALDVVG--RPGVHQAVFPPGTKESHYEEYEEKALRRLLQQGPAFRARSWAWPS 386
A+ AA R ++ +L S G AR R P+LH+A + N+ A LLAAGADE A + G A +VVG P + + G A+ R+L++GPA+RARSWAWP+
Sbjct: 366 RAVGAAASARKGRASIVRMLLSAEGHEREGHWARCRYKEDPVLHSAVSFGNISATRVLLAAGADETAENEDGRPAREVVGFNAPSLQRDPAKKG------------AIVRMLERGPAYRARSWAWPA 480
BLAST of mRNA_S-dermatodea_contig826.16456.1 vs. uniprot
Match: A0A6H5JSC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSC7_9PHAE) HSP 1 Score: 57.0 bits (136), Expect = 8.070e-5 Identity = 46/127 (36.22%), Postives = 62/127 (48.82%), Query Frame = 3
Query: 12 EALYAAVMLPAPRTILLLLLRSRAGGMSPRQLARSRPLGFPMLHAAATCVNLIAASTLLAAGADEEATDARGDRALDVVG--RPGVHQAVFPPGTKESHYEEYEEKALRRLLQQGPAFRARSWAWPS 386
A+ AA R ++ +L S G AR R P+LH A + N+ A LLAAGADE A + G A +VVG P + + G A+ R+L +GPA+RARSWAWP+
Sbjct: 374 RAVGAAASARKGRASIVRMLLSAEGHEREGHWARCRYKEDPVLHCAVSFGNISATRVLLAAGADETAENEDGRPAREVVGFNAPSLQRDPAKKG------------AIVRMLARGPAYRARSWAWPA 488 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig826.16456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig826.16456.1 >prot_S-dermatodea_contig826.16456.1 ID=prot_S-dermatodea_contig826.16456.1|Name=mRNA_S-dermatodea_contig826.16456.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=172bp MLPAPRTILLLLLRSRAGGMSPRQLARSRPLGFPMLHAAATCVNLIAASTback to top mRNA from alignment at S-dermatodea_contig826:1678..6304+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig826.16456.1 ID=mRNA_S-dermatodea_contig826.16456.1|Name=mRNA_S-dermatodea_contig826.16456.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4627bp|location=Sequence derived from alignment at S-dermatodea_contig826:1678..6304+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig826:1678..6304+ >mRNA_S-dermatodea_contig826.16456.1 ID=mRNA_S-dermatodea_contig826.16456.1|Name=mRNA_S-dermatodea_contig826.16456.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1032bp|location=Sequence derived from alignment at S-dermatodea_contig826:1678..6304+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |