mRNA_S-dermatodea_contig82597.16454.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig82597.16454.1
Unique NamemRNA_S-dermatodea_contig82597.16454.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig82597.16454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig82597contigS-dermatodea_contig82597:82..685 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size604
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig82597.16454.1prot_S-dermatodea_contig82597.16454.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig82597 145..447 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925331.837315-UTR-S-dermatodea_contig82597:81..1441622925331.837315-UTR-S-dermatodea_contig82597:81..144Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig82597 82..144 +
1694079860.9333992-UTR-S-dermatodea_contig82597:81..1441694079860.9333992-UTR-S-dermatodea_contig82597:81..144Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig82597 82..144 +
1622925331.8609455-UTR-S-dermatodea_contig82597:447..6851622925331.8609455-UTR-S-dermatodea_contig82597:447..685Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig82597 448..685 +
1694079860.9514492-UTR-S-dermatodea_contig82597:447..6851694079860.9514492-UTR-S-dermatodea_contig82597:447..685Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig82597 448..685 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925331.8505564-CDS-S-dermatodea_contig82597:144..4471622925331.8505564-CDS-S-dermatodea_contig82597:144..447Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82597 145..447 +
1694079860.9424057-CDS-S-dermatodea_contig82597:144..4471694079860.9424057-CDS-S-dermatodea_contig82597:144..447Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82597 145..447 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig82597.16454.1

>prot_S-dermatodea_contig82597.16454.1 ID=prot_S-dermatodea_contig82597.16454.1|Name=mRNA_S-dermatodea_contig82597.16454.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=101bp
MIFPLDAPPHIKYGYYSSCNIKYDNPSGSPRPFICVIHSFWRRKKIKCGM
KYSRLAELYTAPHPRPMTSYTSQTSVVGPKGMHHLDRDILQMIVQHLCRI
*
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mRNA from alignment at S-dermatodea_contig82597:82..685+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig82597.16454.1 ID=mRNA_S-dermatodea_contig82597.16454.1|Name=mRNA_S-dermatodea_contig82597.16454.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=604bp|location=Sequence derived from alignment at S-dermatodea_contig82597:82..685+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCATCCTTGTCTAAAATCAATATAAACAATCGGTCATTGTTGCATCACT
TAATAAGATATCAATGATATTTCCCCTGGACGCGCCACCGCATATCAAAT
ACGGCTACTACTCCTCGTGCAACATTAAATATGATAATCCCTCTGGATCC
CCTCGCCCTTTCATTTGCGTCATCCACTCATTTTGGCGAAGAAAAAAAAT
CAAATGTGGAATGAAGTACTCCAGACTGGCAGAGTTGTACACTGCCCCCC
ACCCACGGCCAATGACTTCATACACATCACAAACAAGCGTCGTGGGACCA
AAAGGCATGCATCATCTCGACCGAGATATCCTGCAAATGATCGTTCAACA
CCTTTGTCGCATTTGACCATCGACTGGCCCGCCACTGGTTTCCGATCCCG
CCTCCGGGTCAGATGAGAAAACGAGAAGCCCATAAAACAACGAAACTCTC
TTATGATACAGAGCAATATATACGGAACAATGGACACGGCGCTCGGAATC
AGAGAGAGCATGCACGCTTAAGGACTTAGGTGTGCTCTCTCTGCCTACAG
CAAGGGCTAATCACACTTTCGATGCCTGAAGCCTGGCAGCCTCGCGGCTT
TCGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig82597:82..685+

>mRNA_S-dermatodea_contig82597.16454.1 ID=mRNA_S-dermatodea_contig82597.16454.1|Name=mRNA_S-dermatodea_contig82597.16454.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at S-dermatodea_contig82597:82..685+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATATTTCCCCTGGACGCGCCACCGCATATCAAATACGGCTACTACTC
CTCGTGCAACATTAAATATGATAATCCCTCTGGATCCCCTCGCCCTTTCA
TTTGCGTCATCCACTCATTTTGGCGAAGAAAAAAAATCAAATGTGGAATG
AAGTACTCCAGACTGGCAGAGTTGTACACTGCCCCCCACCCACGGCCAAT
GACTTCATACACATCACAAACAAGCGTCGTGGGACCAAAAGGCATGCATC
ATCTCGACCGAGATATCCTGCAAATGATCGTTCAACACCTTTGTCGCATT
TGAATGATATTTCCCCTGGACGCGCCACCGCATATCAAATACGGCTACTA
CTCCTCGTGCAACATTAAATATGATAATCCCTCTGGATCCCCTCGCCCTT
TCATTTGCGTCATCCACTCATTTTGGCGAAGAAAAAAAATCAAATGTGGA
ATGAAGTACTCCAGACTGGCAGAGTTGTACACTGCCCCCCACCCACGGCC
AATGACTTCATACACATCACAAACAAGCGTCGTGGGACCAAAAGGCATGC
ATCATCTCGACCGAGATATCCTGCAAATGATCGTTCAACACCTTTGTCGC
ATTTGA
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