mRNA_S-dermatodea_contig82580.16453.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig82580.16453.1
Unique NamemRNA_S-dermatodea_contig82580.16453.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig82580.16453.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.220e-20
Identity = 47/102 (46.08%), Postives = 63/102 (61.76%), Query Frame = 2 
Query:    5 MLVDSGASQHLVDNALFAGIEQHLLNYTVLSPPVLFNTAG-GVRHGIGKGVLPVLAADHLGRYQTFTMEVTLVPGMGRHLFSSASARDRGVSTVIGAQSYLD 307
            M VD+GAS H +DN L   +EQ ++ YT + PP+L + AG G  HG  KG L V   D  G  ++  +    VP +GRHLFS  +AR +GVST IG+ S+LD
Sbjct:   45 MTVDTGASNHFLDNELIPALEQRMVEYTKIDPPLLIHVAGQGQLHGTAKGALKVTVTDQNGNPRSIRLPFICVPKLGRHLFSGGTARKQGVSTFIGSTSFLD 146
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BLAST of mRNA_S-dermatodea_contig82580.16453.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 4.020e-12
Identity = 35/98 (35.71%), Postives = 58/98 (59.18%), Query Frame = 2 
Query:   17 SGASQHLVDNALFAGIEQHLLNYTVLSPPVLFNTAGGVR-HGIGKGVLPVLAADHLGRYQTFTMEVTLVPGMGRHLFSSASARDRGVSTVIGAQSYLD 307
            SGAS H +D+ L   +E  L ++T ++ P     AGG+   G  KG++ V A D  G  +    + T+VPG+GRHLFS+ +A+ +G +T++  Q  ++
Sbjct:  311 SGASGHYLDSELLPDLENILDDFTYITTPTKIIGAGGIELEGTSKGIISVFAKDEEGNDRRVRFKCTVVPGLGRHLFSTGTAQKKGANTIMSDQPRIE 408
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BLAST of mRNA_S-dermatodea_contig82580.16453.1 vs. uniprot
Match: A0A6H5JYD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD3_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 1.230e-5
Identity = 28/95 (29.47%), Postives = 52/95 (54.74%), Query Frame = 2 
Query:    5 MLVDSGASQHLVDNALFAGIEQHLLNYTVLSPPVLFNTAGGVR-HGIGKGVLPVLAADHLGRYQTFTMEVTLVPGMGRHLFSSASARDRGVSTVI 286
            +L+D+GAS++++D+ L  G+++ +     L+ P + +  GG    G   G++     D  G  +   +   +VPG+GR++FS A+    GV  VI
Sbjct:  136 LLIDTGASENMLDDRLIPGLKEIMRESKELAKPKVVSVGGGHELDGNATGLIHCTVKDSNGEKKAVLLRGLVVPGLGRNVFSRAAQIKNGVKLVI 230
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BLAST of mRNA_S-dermatodea_contig82580.16453.1 vs. uniprot
Match: A0A6H5JSB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSB5_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 3.110e-5
Identity = 28/94 (29.79%), Postives = 52/94 (55.32%), Query Frame = 2 
Query:    8 LVDSGASQHLVDNALFAGIEQHLLNYTVLSPPVLFNTAGGVR-HGIGKGVLPVLAADHLGRYQTFTMEVTLVPGMGRHLFSSASARDRGVSTVI 286
            LVD+GAS++++D+ L  G+++ +  +  L+ P + +  G  +  G   G++      + GR Q   +   +VPG+GR++FS  +    GV  VI
Sbjct:  333 LVDTGASENMLDDRLIPGLKETMREFNHLAKPKVVSVGGDHKLDGNATGLIHCTGKYNGGRKQAVLLRGLVVPGLGRNVFSPTAQIKNGVKLVI 426
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig82580.16453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KAG6_9PHAE1.220e-2046.08Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KY84_9PHAE4.020e-1235.71Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JYD3_9PHAE1.230e-529.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSB5_9PHAE3.110e-529.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig82580contigS-dermatodea_contig82580:328..636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size311
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925331.804043-CDS-S-dermatodea_contig82580:327..6361622925331.804043-CDS-S-dermatodea_contig82580:327..636Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82580 328..636 +
1694079860.9233155-CDS-S-dermatodea_contig82580:327..6361694079860.9233155-CDS-S-dermatodea_contig82580:327..636Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82580 328..636 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig82580.16453.1prot_S-dermatodea_contig82580.16453.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig82580 328..636 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig82580.16453.1

>prot_S-dermatodea_contig82580.16453.1 ID=prot_S-dermatodea_contig82580.16453.1|Name=mRNA_S-dermatodea_contig82580.16453.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=103bp
THAGRQRGIATSRGQRPFRGHRATSPKLHRPQPAGAIQHGRGSSTRHRQG
SPSCPRCRSSWTISDVHDGGYTRAGHGSPPIFIGERKGQRGIDGDWSSVV
SG*
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mRNA from alignment at S-dermatodea_contig82580:328..636+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig82580.16453.1 ID=mRNA_S-dermatodea_contig82580.16453.1|Name=mRNA_S-dermatodea_contig82580.16453.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=309bp|location=Sequence derived from alignment at S-dermatodea_contig82580:328..636+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACCCATGCTGGTAGACAGCGGGGCATCGCAACATCTCGTGGACAACGCCC
TTTTCGCGGGCATAGAGCAACATCTCCTAAACTACACCGTCCTCAGCCCG
CCGGTGCTATTCAACACGGCAGGGGGAGTTCGACACGGCATAGGCAAGGG
AGTCCTTCCTGTCCTCGCTGCAGATCATCTTGGACGATATCAGACGTTCA
CGATGGAGGTTACACTCGTGCCGGGCATGGGTCGCCACCTATTTTCATCG
GCGAGCGCAAGGGACAGAGGGGTATCGACGGTGATTGGAGCTCAGTCGTA
TCTGGATAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig82580:328..636+

>mRNA_S-dermatodea_contig82580.16453.1 ID=mRNA_S-dermatodea_contig82580.16453.1|Name=mRNA_S-dermatodea_contig82580.16453.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at S-dermatodea_contig82580:328..636+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACCCATGCTGGTAGACAGCGGGGCATCGCAACATCTCGTGGACAACGCCC
TTTTCGCGGGCATAGAGCAACATCTCCTAAACTACACCGTCCTCAGCCCG
CCGGTGCTATTCAACACGGCAGGGGGAGTTCGACACGGCATAGGCAAGGG
AGTCCTTCCTGTCCTCGCTGCAGATCATCTTGGACGATATCAGACGTTCA
CGATGGAGGTTACACTCGTGCCGGGCATGGGTCGCCACCTATTTTCATCG
GCGAGCGCAAGGGACAGAGGGGTATCGACGGTGATTGGAGCTCAGTCGTA
TCTGGATAAACCCATGCTGGTAGACAGCGGGGCATCGCAACATCTCGTGG
ACAACGCCCTTTTCGCGGGCATAGAGCAACATCTCCTAAACTACACCGTC
CTCAGCCCGCCGGTGCTATTCAACACGGCAGGGGGAGTTCGACACGGCAT
AGGCAAGGGAGTCCTTCCTGTCCTCGCTGCAGATCATCTTGGACGATATC
AGACGTTCACGATGGAGGTTACACTCGTGCCGGGCATGGGTCGCCACCTA
TTTTCATCGGCGAGCGCAAGGGACAGAGGGGTATCGACGGTGATTGGAGC
TCAGTCGTATCTGGATAA
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