mRNA_S-dermatodea_contig8254.16452.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8254.16452.1
Unique NamemRNA_S-dermatodea_contig8254.16452.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8254.16452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8254contigS-dermatodea_contig8254:1443..2267 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size445
Cds size336
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8254.16452.1prot_S-dermatodea_contig8254.16452.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8254 1550..2267 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925331.744086-UTR-S-dermatodea_contig8254:1442..15491622925331.744086-UTR-S-dermatodea_contig8254:1442..1549Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8254 1443..1549 -
1694079860.884402-UTR-S-dermatodea_contig8254:1442..15491694079860.884402-UTR-S-dermatodea_contig8254:1442..1549Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8254 1443..1549 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925331.7558155-CDS-S-dermatodea_contig8254:1549..18131622925331.7558155-CDS-S-dermatodea_contig8254:1549..1813Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8254 1550..1813 -
1694079860.8994918-CDS-S-dermatodea_contig8254:1549..18131694079860.8994918-CDS-S-dermatodea_contig8254:1549..1813Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8254 1550..1813 -
1622925331.767103-CDS-S-dermatodea_contig8254:2195..22671622925331.767103-CDS-S-dermatodea_contig8254:2195..2267Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8254 2196..2267 -
1694079860.9091318-CDS-S-dermatodea_contig8254:2195..22671694079860.9091318-CDS-S-dermatodea_contig8254:2195..2267Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8254 2196..2267 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8254.16452.1

>prot_S-dermatodea_contig8254.16452.1 ID=prot_S-dermatodea_contig8254.16452.1|Name=mRNA_S-dermatodea_contig8254.16452.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=112bp
LDERALLAAHLPERHSLLANKLQQVEQPTANDSYSSVIAPYKGEARHRAK
QEQERLLKQAYAGRHRHLLGGGSQLPYVLPIFRRHAIAEHVRRCHGAARR
NGRETAQAGLH*
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mRNA from alignment at S-dermatodea_contig8254:1443..2267-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8254.16452.1 ID=mRNA_S-dermatodea_contig8254.16452.1|Name=mRNA_S-dermatodea_contig8254.16452.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=825bp|location=Sequence derived from alignment at S-dermatodea_contig8254:1443..2267- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTTGATGAGCGTGCGCTGCTGGCAGCACATCTTCCGGAGCGCCACTCACT
ACTAGCCAACAAACTTCAGCAGGTATTCTGTGCATTGAGTCACTTCGACA
ATTCGCTCTGTAGCTCATGTGCTTTGCAGGTGGTCACTTAGGTATTGACC
TCTCACAAACTTGTACATTGTCTAGTACTACTGCATGTAGTTACAGGAGT
CTGTAGAGCTGCCATCTGTCTCACTGAGAGATACATCAGTATAGCCCCCC
CGCCGGGTCGTTTGGTATCTAATCTCTAGGGCCCTCTAACCTTCCTGGGT
TTCCCTGAAAGAGATCACGCCCTAGTCGTTCACCACGTCGTACTCAGGCA
ATGCTTATTTGCCTCCTTCGTTGCCCCCTCGTGTCGTGCATTATATATAT
GTGTGTACTACAAAGTCTACTGCTGTACTACTCTGTACCCACAAATCCGT
ACAGGTTGAGCAACCTACGGCAAACGACAGCTACAGCAGTGTCATAGCTC
CCTACAAAGGCGAAGCCAGGCACAGGGCTAAGCAAGAGCAAGAACGCCTG
CTGAAACAGGCATATGCCGGCAGACATCGACATCTTCTCGGTGGCGGCAG
CCAGCTCCCATACGTACTCCCTATTTTCCGGCGACATGCGATCGCCGAGC
ACGTGCGAAGATGCCATGGTGCCGCCCGCCGTAACGGGAGGGAAACGGCG
CAAGCAGGCCTCCACTAGAGCAGCAGCAATGGCACTGCTCGCGAGTTTCG
CCGCGATTGCGTCTACCGCGCGAGGACAAATGGACCCAGCAGAGATGCAG
CGACAAATCCAGCAGCAGATGGGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8254:1443..2267-

>mRNA_S-dermatodea_contig8254.16452.1 ID=mRNA_S-dermatodea_contig8254.16452.1|Name=mRNA_S-dermatodea_contig8254.16452.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at S-dermatodea_contig8254:1443..2267- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTTGATGAGCGTGCGCTGCTGGCAGCACATCTTCCGGAGCGCCACTCACT
ACTAGCCAACAAACTTCAGCAGCTTGATGAGCGTGCGCTGCTGGCAGCAC
ATCTTCCGGAGCGCCACTCACTACTAGCCAACAAACTTCAGCAGGTTGAG
CAACCTACGGCAAACGACAGCTACAGCAGTGTCATAGCTCCCTACAAAGG
CGAAGCCAGGCACAGGGCTAAGCAAGAGCAAGAACGCCTGCTGAAACAGG
CATATGCCGGCAGACATCGACATCTTCTCGGTGGCGGCAGCCAGCTCCCA
TACGTACTCCCTATTTTCCGGCGACATGCGATCGCCGAGCACGTGCGAAG
ATGCCATGGTGCCGCCCGCCGTAACGGGAGGGAAACGGCGCAAGCAGGCC
TCCACTAGGTTGAGCAACCTACGGCAAACGACAGCTACAGCAGTGTCATA
GCTCCCTACAAAGGCGAAGCCAGGCACAGGGCTAAGCAAGAGCAAGAACG
CCTGCTGAAACAGGCATATGCCGGCAGACATCGACATCTTCTCGGTGGCG
GCAGCCAGCTCCCATACGTACTCCCTATTTTCCGGCGACATGCGATCGCC
GAGCACGTGCGAAGATGCCATGGTGCCGCCCGCCGTAACGGGAGGGAAAC
GGCGCAAGCAGGCCTCCACTAG
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