mRNA_S-dermatodea_contig824.16435.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig824.16435.1
Unique NamemRNA_S-dermatodea_contig824.16435.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig824.16435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig824contigS-dermatodea_contig824:9299..11207 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size354
Cds size351
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig824.16435.1prot_S-dermatodea_contig824.16435.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig824 9300..11207 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925330.6959348-CDS-S-dermatodea_contig824:9299..93311622925330.6959348-CDS-S-dermatodea_contig824:9299..9331Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig824 9300..9331 -
1694079860.2384543-CDS-S-dermatodea_contig824:9299..93311694079860.2384543-CDS-S-dermatodea_contig824:9299..9331Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig824 9300..9331 -
1622925330.7105558-CDS-S-dermatodea_contig824:9819..99641622925330.7105558-CDS-S-dermatodea_contig824:9819..9964Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig824 9820..9964 -
1694079860.2485287-CDS-S-dermatodea_contig824:9819..99641694079860.2485287-CDS-S-dermatodea_contig824:9819..9964Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig824 9820..9964 -
1622925330.7204268-CDS-S-dermatodea_contig824:11033..112071622925330.7204268-CDS-S-dermatodea_contig824:11033..11207Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig824 11034..11207 -
1694079860.2645614-CDS-S-dermatodea_contig824:11033..112071694079860.2645614-CDS-S-dermatodea_contig824:11033..11207Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig824 11034..11207 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig824.16435.1

>prot_S-dermatodea_contig824.16435.1 ID=prot_S-dermatodea_contig824.16435.1|Name=mRNA_S-dermatodea_contig824.16435.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=117bp
EVDASVPSVKGLKAAVEAKVDDIAAKAHDMPSLDLKKPKKSRFGLFKKPS
LMGKGKVEAPDVEVSASLPEVAVSVPEVSAPSVDVDVPDASASVDVPSVS
ASVDVPGVEGGLKGPEM
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mRNA from alignment at S-dermatodea_contig824:9299..11207-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig824.16435.1 ID=mRNA_S-dermatodea_contig824.16435.1|Name=mRNA_S-dermatodea_contig824.16435.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1909bp|location=Sequence derived from alignment at S-dermatodea_contig824:9299..11207- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAAGTGGACGCGTCCGTGCCGTCTGTGAAGGGGCTGAAGGCGGCCGTCGA
AGCGAAGGTGGACGATATCGCGGCCAAGGCTCACGATATGCCTTCGTTGG
ACTTGAAGAAGCCGAAGAAGAGCCGGTTCGGTCTGTTCAAGAAGCCGTCG
CTCATGGGCAAGGGCAAGGTCGAGGTACGTCTTGCGTCTTGCCTGTTTTT
CTTTTCTTTTTGTAATATTCACGCCTGTGGCAGTTTTCTCTTGGTTGGAC
CATTTTCTTTGCAGTGTGGTAAAAGAGAGGCTAGCTTGGTCAGGGCTTGG
ACGCGCGCTCGCTCGCTCACTCACGCGCCTACCCCCTTTTCCCCGGCAAA
GCAACGCCGTTTATACCTTTTTGGACCGAGCCTGTTATCGAGCGAGGTCG
TGTACCCGGACTCTTTTTCATGGTGTACCAAATCGCGACCCAATCCCGGC
TCCCGTTGGCCTTGCCGTATGCATTGTGGGAGGTGTCACGCTTTGCTTAC
ATGCGAGATGCTGCCCTCTTATATCACATTGGCCGCAAATGTATATATGC
GCTCACGGAGTTGAACAATGTAGGAAGAAAATCGGACTCCAGTCAAGAGT
CCCATAAGGGTCCCAAATGCAAATTCTATTTTCTTCTGTTGTGGTGTTTT
TTTTTCTACAAGCAGTAGTTCCGCTGGCGGTTTGAGTGATTGATTGATTG
ATTGGTTTGATTTACAGTAATTGGATTGATATGTCACACTTACTACCGAC
CGGCCGCCAATGAATGGTTGCCGATCCTGCTCGTGTTCAGTGTTCGGATG
AGAGATCGAGAAAACCCTACGGAATTGTGTCACGAATGTTTTTTTTTCTA
CAAGCAGTAGTTCCGCTGGCGGTTTGAGTGAGTGATTGATTGATTGGTTT
GATTTACAGTAATTGGATTGATATGTCACACTTACTACTGACCGGCCGCC
AATGAATGGTTGCCGATCCTGCTCGTGTTCAGTGTTCGGATGAGAGATCG
AGAAAACCCTACGGAATTGTGTCACGAATGTTCCACGGTCAAACGTTGTG
ACGTGGTCGACATCCATACCCCTGCTGCCCCCCCCCCCCCCCCCCCCCCC
CGCCCACCGGCCAGGCTACGCACGANNNNNNNNNNAGAAAAACCCCCGGG
AGTTGGTTCCTAATGTTCCACGGCCAAACGGTGGGGCGGGGGCGCCAACC
CTCCCCCCGCTGCCCCCCCCCCCCCCCCCCGCGCGCGCGACAGGCGCCGG
ATGTAGAAGTATCTGCTTCGCTGCCTGAGGTTGCCGTCTCCGTCCCTGAG
GTGTCCGCGCCGTCGGTGGACGTTGATGTGCCGGATGCTTCCGCCTCGGT
GGACGTGCCGTCTGTCTCTGCTTCCGTTGACGTGCCCGGTGAGAGAGCCG
GAACGGGAAGGGTGAAGGTGTAGGGAATAGTGAAATGTGATTTATTACAG
AAGTACACAGTATTTTGTATGACAACTCATTTGAATATATATATATAGAG
AGAGAAAGGGACATTACGAGGGTGTTCGGACCAACGTTCAAAAACAAGGC
TTGGATTACGCTTATTGAGCAGAAATTGTGGTCCTCCAAACTGTTTTACT
TCGAAGTATTGCATTGCGACGCGACGCGTAGCTGCTAGAGATGTGGGTAC
TTGTAGGCAGTCTGTCTCCACGTGAAGGCGTCAAGCGCTCCGATGGATTG
CTCTATACCCCAATCAATCACATGCCGTTTTTTTTTTTCTCGTCGCTTTT
CCTCCGGGCGGGCACCTTTTGAGGTAACCACTTGGCAGCTACAGGTACTG
CAGCTGCTCTCTCGGTCGTGACCATAAAACGACTCTGTTTTCCGATCCCA
CCCCTTTGGTCGTGTAATTGCGCCAGGCGTAGAGGGCGGTCTCAAGGGCC
CCGAGATGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig824:9299..11207-

>mRNA_S-dermatodea_contig824.16435.1 ID=mRNA_S-dermatodea_contig824.16435.1|Name=mRNA_S-dermatodea_contig824.16435.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at S-dermatodea_contig824:9299..11207- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAAGTGGACGCGTCCGTGCCGTCTGTGAAGGGGCTGAAGGCGGCCGTCGA
AGCGAAGGTGGACGATATCGCGGCCAAGGCTCACGATATGCCTTCGTTGG
ACTTGAAGAAGCCGAAGAAGAGCCGGTTCGGTCTGTTCAAGAAGCCGTCG
CTCATGGGCAAGGGCAAGGTCGAGGAAGTGGACGCGTCCGTGCCGTCTGT
GAAGGGGCTGAAGGCGGCCGTCGAAGCGAAGGTGGACGATATCGCGGCCA
AGGCTCACGATATGCCTTCGTTGGACTTGAAGAAGCCGAAGAAGAGCCGG
TTCGGTCTGTTCAAGAAGCCGTCGCTCATGGGCAAGGGCAAGGTCGAGGC
GCCGGATGTAGAAGTATCTGCTTCGCTGCCTGAGGTTGCCGTCTCCGTCC
CTGAGGTGTCCGCGCCGTCGGTGGACGTTGATGTGCCGGATGCTTCCGCC
TCGGTGGACGTGCCGTCTGTCTCTGCTTCCGTTGACGTGCCCGGCGCCGG
ATGTAGAAGTATCTGCTTCGCTGCCTGAGGTTGCCGTCTCCGTCCCTGAG
GTGTCCGCGCCGTCGGTGGACGTTGATGTGCCGGATGCTTCCGCCTCGGT
GGACGTGCCGTCTGTCTCTGCTTCCGTTGACGTGCCCGGCGTAGAGGGCG
GTCTCAAGGGCCCCGAGATGGCGTAGAGGGCGGTCTCAAGGGCCCCGAGA
TG
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