mRNA_S-dermatodea_contig82392.16432.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig82392.16432.1
Unique NamemRNA_S-dermatodea_contig82392.16432.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig82392.16432.1 vs. uniprot
Match: A0A812W0T6_SYMMI (ModA protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812W0T6_SYMMI)

HSP 1 Score: 125 bits (315), Expect = 1.710e-34
Identity = 53/59 (89.83%), Postives = 57/59 (96.61%), Query Frame = 1 
Query:    1 QDFDGWCWPGQSSYLDFTDATVRDWWASRFALNKYEGSTLDLYTWNDMNEPSVFNGPEV 177
            +DFDGWCWPGQSSYLDFTDA VR+WWA RFAL+KYEGSTLDL+TWNDMNEPSVFNGPEV
Sbjct:  128 KDFDGWCWPGQSSYLDFTDARVREWWAGRFALDKYEGSTLDLFTWNDMNEPSVFNGPEV 186
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BLAST of mRNA_S-dermatodea_contig82392.16432.1 vs. uniprot
Match: D7G789_ECTSI (Alpha-glucosidase II alpha subunit, family GH31 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G789_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 5.620e-32
Identity = 53/58 (91.38%), Postives = 55/58 (94.83%), Query Frame = 1 
Query:    4 DFDGWCWPGQSSYLDFTDATVRDWWASRFALNKYEGSTLDLYTWNDMNEPSVFNGPEV 177
            DFDGWCWPGQSSYLDFTD  VR+WWASRFAL +YEGSTLDLYTWNDMNEPSVFNGPEV
Sbjct:  107 DFDGWCWPGQSSYLDFTDEGVREWWASRFALEEYEGSTLDLYTWNDMNEPSVFNGPEV 164
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BLAST of mRNA_S-dermatodea_contig82392.16432.1 vs. uniprot
Match: A0A6H5KLR8_9PHAE (Gal_mutarotas_2 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLR8_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 1.130e-31
Identity = 53/58 (91.38%), Postives = 55/58 (94.83%), Query Frame = 1 
Query:    4 DFDGWCWPGQSSYLDFTDATVRDWWASRFALNKYEGSTLDLYTWNDMNEPSVFNGPEV 177
            DFDGWCWPGQSSYLDFTD  VR+WWASRFAL +YEGSTLDLYTWNDMNEPSVFNGPEV
Sbjct:  558 DFDGWCWPGQSSYLDFTDEGVREWWASRFALEEYEGSTLDLYTWNDMNEPSVFNGPEV 615
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BLAST of mRNA_S-dermatodea_contig82392.16432.1 vs. uniprot
Match: A0A7S1C9T9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C9T9_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.300e-29
Identity = 47/58 (81.03%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:    4 DFDGWCWPGQSSYLDFTDATVRDWWASRFALNKYEGSTLDLYTWNDMNEPSVFNGPEV 177
            +FDGWCWPG SSYLDFTDA VR WW+ RF L  YEGSTL L+TWNDMNEPSVFNGPEV
Sbjct:  165 EFDGWCWPGSSSYLDFTDARVRSWWSDRFLLENYEGSTLSLFTWNDMNEPSVFNGPEV 222
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BLAST of mRNA_S-dermatodea_contig82392.16432.1 vs. uniprot
Match: A0A7S2STM5_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STM5_9STRA)

HSP 1 Score: 116 bits (290), Expect = 9.050e-29
Identity = 48/60 (80.00%), Postives = 53/60 (88.33%), Query Frame = 1 
Query:    4 DFDGWCWPGQSSYLDFTDATVRDWWASRFALNKYEGSTLDLYTWNDMNEPSVFNGPEVLI 183
            DFDGWCWPG SSYLDFT   VR+WWA + AL+KYEGST+DLYTWNDMNEPSVFNGPEV +
Sbjct:  522 DFDGWCWPGSSSYLDFTQPHVREWWAQQLALDKYEGSTMDLYTWNDMNEPSVFNGPEVTM 581
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BLAST of mRNA_S-dermatodea_contig82392.16432.1 vs. uniprot
Match: A0A7S2PTL2_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PTL2_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.230e-28
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    1 QDFDGWCWPGQSSYLDFTDATVRDWWASRFALNKYEGSTLDLYTWNDMNEPSVFNGPEV 177
            +D+DGWCWPG SSYLDFTDA+VR WWA +FA NKY GST +LYTWNDMNEPSVFNGPEV
Sbjct:  523 KDYDGWCWPGSSSYLDFTDASVRQWWAEQFAFNKYIGSTKNLYTWNDMNEPSVFNGPEV 581
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BLAST of mRNA_S-dermatodea_contig82392.16432.1 vs. uniprot
Match: A0A482UAJ4_9ARCH (Alpha-glucosidase (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UAJ4_9ARCH)

HSP 1 Score: 112 bits (279), Expect = 2.160e-28
Identity = 46/62 (74.19%), Postives = 54/62 (87.10%), Query Frame = 1 
Query:    1 QDFDGWCWPGQSSYLDFTDATVRDWWASRFALNKYEGSTLDLYTWNDMNEPSVFNGPEVLID 186
            Q++DGWCWPG SSYLDFT+   RDWWAS+FAL+KY GST +LY WNDMNEPSVFNGPEV ++
Sbjct:   70 QEYDGWCWPGSSSYLDFTNPMTRDWWASQFALDKYAGSTQNLYIWNDMNEPSVFNGPEVSMN 131
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BLAST of mRNA_S-dermatodea_contig82392.16432.1 vs. uniprot
Match: A0A4D9D2P9_9STRA (Gal_mutarotas_2 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2P9_9STRA)

HSP 1 Score: 114 bits (286), Expect = 3.140e-28
Identity = 50/58 (86.21%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:    4 DFDGWCWPGQSSYLDFTDATVRDWWASRFALNKYEGSTLDLYTWNDMNEPSVFNGPEV 177
            DFDG+CWPGQSSYLDFTDA VR WWA RFAL+KY GST +LYTWNDMNEPSVFNGPEV
Sbjct:  551 DFDGFCWPGQSSYLDFTDAGVRRWWAERFALDKYTGSTSNLYTWNDMNEPSVFNGPEV 608
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BLAST of mRNA_S-dermatodea_contig82392.16432.1 vs. uniprot
Match: A0A7S3JQN4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JQN4_9STRA)

HSP 1 Score: 114 bits (285), Expect = 4.290e-28
Identity = 47/61 (77.05%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:    1 QDFDGWCWPGQSSYLDFTDATVRDWWASRFALNKYEGSTLDLYTWNDMNEPSVFNGPEVLI 183
            +DF+GWCWPG SSYLDFT A VR WWA +F L+ Y+GSTLDLYTWNDMNEPSVFNGPEV +
Sbjct:  522 KDFEGWCWPGSSSYLDFTSADVRKWWAEQFLLSSYQGSTLDLYTWNDMNEPSVFNGPEVTM 582
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BLAST of mRNA_S-dermatodea_contig82392.16432.1 vs. uniprot
Match: A0A7S4DBU0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBU0_HETAK)

HSP 1 Score: 114 bits (284), Expect = 5.410e-28
Identity = 47/59 (79.66%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    1 QDFDGWCWPGQSSYLDFTDATVRDWWASRFALNKYEGSTLDLYTWNDMNEPSVFNGPEV 177
            +DFDGWCWPG SSYLDFT   VR WWA +FAL+ Y+GSTLDL+TWNDMNEPSVFNGPEV
Sbjct:  190 EDFDGWCWPGASSYLDFTSEEVRSWWADQFALDTYQGSTLDLFTWNDMNEPSVFNGPEV 248
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig82392.16432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812W0T6_SYMMI1.710e-3489.83ModA protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
D7G789_ECTSI5.620e-3291.38Alpha-glucosidase II alpha subunit, family GH31 n=... [more]
A0A6H5KLR8_9PHAE1.130e-3191.38Gal_mutarotas_2 domain-containing protein (Fragmen... [more]
A0A7S1C9T9_9STRA1.300e-2981.03Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S2STM5_9STRA9.050e-2980.00Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A7S2PTL2_9STRA1.230e-2881.36Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A482UAJ4_9ARCH2.160e-2874.19Alpha-glucosidase (Fragment) n=1 Tax=archaeon TaxI... [more]
A0A4D9D2P9_9STRA3.140e-2886.21Gal_mutarotas_2 domain-containing protein n=2 Tax=... [more]
A0A7S3JQN4_9STRA4.290e-2877.05Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S4DBU0_HETAK5.410e-2879.66Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig82392contigS-dermatodea_contig82392:47..235 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.8
Seed ortholog evalue1.4e-26
Seed eggNOG ortholog2880.D7G789
Preferred nameROT2
KEGG rclassRC00028,RC00049,RC00077
KEGG koko:K01187,ko:K05546
KEGG ReactionR00028,R00801,R00802,R05980,R05981,R06087,R06088
KEGG Pathwayko00052,ko00500,ko00510,ko01100,ko04141,map00052,map00500,map00510,map01100,map04141
KEGG ModuleM00073,M00074
GOsGO:0000271,GO:0000902,GO:0003674,GO:0003824,GO:0004553,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005788,GO:0005975,GO:0005976,GO:0006073,GO:0006464,GO:0006486,GO:0006487,GO:0006491,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009250,GO:0009272,GO:0009507,GO:0009536,GO:0009605,GO:0009607,GO:0009617,GO:0009653,GO:0009826,GO:0009987,GO:0010035,GO:0010038,GO:0010383,GO:0012505,GO:0015926,GO:0016043,GO:0016049,GO:0016051,GO:0016787,GO:0016798,GO:0017177,GO:0019538,GO:0030243,GO:0030244,GO:0030587,GO:0031288,GO:0031974,GO:0032502,GO:0032989,GO:0032991,GO:0033692,GO:0033919,GO:0034406,GO:0034637,GO:0034645,GO:0036211,GO:0040007,GO:0042221,GO:0042546,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043413,GO:0043687,GO:0044036,GO:0044038,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0048589,GO:0048856,GO:0048869,GO:0050896,GO:0051273,GO:0051274,GO:0051278,GO:0051703,GO:0051704,GO:0051707,GO:0060560,GO:0070013,GO:0070085,GO:0070589,GO:0070592,GO:0070879,GO:0070880,GO:0071554,GO:0071704,GO:0071840,GO:0071852,GO:0071966,GO:0090599,GO:0090600,GO:0090702,GO:0098542,GO:0099120,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.alpha-1,3-glucosidase activity
EggNOG OGsCOG1501@1,KOG1066@2759
EC3.2.1.20,3.2.1.84
COG Functional cat.G
CAZyGH31
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size189
Cds size189
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925330.5670645-CDS-S-dermatodea_contig82392:46..2351622925330.5670645-CDS-S-dermatodea_contig82392:46..235Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82392 47..235 -
1694079860.1560645-CDS-S-dermatodea_contig82392:46..2351694079860.1560645-CDS-S-dermatodea_contig82392:46..235Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82392 47..235 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig82392.16432.1prot_S-dermatodea_contig82392.16432.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig82392 47..235 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig82392.16432.1

>prot_S-dermatodea_contig82392.16432.1 ID=prot_S-dermatodea_contig82392.16432.1|Name=mRNA_S-dermatodea_contig82392.16432.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=63bp
QDFDGWCWPGQSSYLDFTDATVRDWWASRFALNKYEGSTLDLYTWNDMNE
PSVFNGPEVLID*
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mRNA from alignment at S-dermatodea_contig82392:47..235-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig82392.16432.1 ID=mRNA_S-dermatodea_contig82392.16432.1|Name=mRNA_S-dermatodea_contig82392.16432.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=189bp|location=Sequence derived from alignment at S-dermatodea_contig82392:47..235- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGACTTCGACGGCTGGTGCTGGCCGGGGCAATCGAGCTACCTGGACTT
CACGGACGCTACTGTGAGGGACTGGTGGGCGTCTCGGTTCGCTTTGAACA
AGTACGAGGGCAGCACGCTCGACCTCTACACGTGGAACGATATGAACGAG
CCCAGCGTCTTCAACGGACCGGAGGTATTGATTGATTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig82392:47..235-

>mRNA_S-dermatodea_contig82392.16432.1 ID=mRNA_S-dermatodea_contig82392.16432.1|Name=mRNA_S-dermatodea_contig82392.16432.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at S-dermatodea_contig82392:47..235- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGACTTCGACGGCTGGTGCTGGCCGGGGCAATCGAGCTACCTGGACTT
CACGGACGCTACTGTGAGGGACTGGTGGGCGTCTCGGTTCGCTTTGAACA
AGTACGAGGGCAGCACGCTCGACCTCTACACGTGGAACGATATGAACGAG
CCCAGCGTCTTCAACGGACCGGAGGTATTGATTGATTGACAGGACTTCGA
CGGCTGGTGCTGGCCGGGGCAATCGAGCTACCTGGACTTCACGGACGCTA
CTGTGAGGGACTGGTGGGCGTCTCGGTTCGCTTTGAACAAGTACGAGGGC
AGCACGCTCGACCTCTACACGTGGAACGATATGAACGAGCCCAGCGTCTT
CAACGGACCGGAGGTATTGATTGATTGA
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