mRNA_S-dermatodea_contig8227.16421.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8227.16421.1
Unique NamemRNA_S-dermatodea_contig8227.16421.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8227.16421.1 vs. uniprot
Match: D7FT58_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT58_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 5.300e-36
Identity = 72/118 (61.02%), Postives = 88/118 (74.58%), Query Frame = 1 
Query:    1 GLVVFADKAGYDKAMVEIFRIFGVNIKGVSVTTHPAEACRTVYVENTGMRTGLNLVGKINEVLQPHYEVMLKSYFLDDDMPQQAVAIPLRSYSAVRGVEARLREHGFYTAYHYIVPKV 354
            GLVVF+D  G+D+A  E FRIFGV+I+G +V T PA  CRT++VEN  MRTGL +V  INEVLQP Y+V L S  L++++PQ  VAIPLR Y AVR V+  L + GF TAYHYIVPKV
Sbjct:  422 GLVVFSDHDGFDRATAESFRIFGVHIEGAAVATSPAYQCRTLFVENLEMRTGLEMVEAINEVLQPRYKVGLASQSLENNVPQ-VVAIPLRKYVAVRAVDKILTDAGFITAYHYIVPKV 538
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BLAST of mRNA_S-dermatodea_contig8227.16421.1 vs. uniprot
Match: A0A6H5KR02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR02_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 8.040e-35
Identity = 71/118 (60.17%), Postives = 87/118 (73.73%), Query Frame = 1 
Query:    1 GLVVFADKAGYDKAMVEIFRIFGVNIKGVSVTTHPAEACRTVYVENTGMRTGLNLVGKINEVLQPHYEVMLKSYFLDDDMPQQAVAIPLRSYSAVRGVEARLREHGFYTAYHYIVPKV 354
            GLVVF+D  G+D+A  E FRIFGV+IKG +V T PA  CRT++VEN  MRTGL +V  INEVLQP Y+V L S  L++++PQ  VAIPLR Y AVR V+  L + GF TAYHYI P+V
Sbjct:  785 GLVVFSDHEGFDRATGESFRIFGVHIKGAAVATSPAHQCRTLFVENLEMRTGLEMVEAINEVLQPRYKVGLASQSLENNVPQ-VVAIPLRKYVAVRAVDKILTDAGFITAYHYIKPQV 901
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8227.16421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FT58_ECTSI5.300e-3661.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KR02_9PHAE8.040e-3560.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8227contigS-dermatodea_contig8227:6727..9209 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNucleotide-binding alpha-beta plait domain
Ec32 orthologEc-19_003500.1
Exons3
Model size375
Cds size375
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8227.16421.1prot_S-dermatodea_contig8227.16421.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8227 6727..9209 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925329.6846251-CDS-S-dermatodea_contig8227:6726..68551622925329.6846251-CDS-S-dermatodea_contig8227:6726..6855Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8227 6727..6855 -
1694079859.5347369-CDS-S-dermatodea_contig8227:6726..68551694079859.5347369-CDS-S-dermatodea_contig8227:6726..6855Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8227 6727..6855 -
1622925329.696053-CDS-S-dermatodea_contig8227:7935..79771622925329.696053-CDS-S-dermatodea_contig8227:7935..7977Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8227 7936..7977 -
1694079859.5481718-CDS-S-dermatodea_contig8227:7935..79771694079859.5481718-CDS-S-dermatodea_contig8227:7935..7977Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8227 7936..7977 -
1622925329.7089272-CDS-S-dermatodea_contig8227:9005..92091622925329.7089272-CDS-S-dermatodea_contig8227:9005..9209Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8227 9006..9209 -
1694079859.5586553-CDS-S-dermatodea_contig8227:9005..92091694079859.5586553-CDS-S-dermatodea_contig8227:9005..9209Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8227 9006..9209 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8227.16421.1

>prot_S-dermatodea_contig8227.16421.1 ID=prot_S-dermatodea_contig8227.16421.1|Name=mRNA_S-dermatodea_contig8227.16421.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=125bp
GLVVFADKAGYDKAMVEIFRIFGVNIKGVSVTTHPAEACRTVYVENTGMR
TGLNLVGKINEVLQPHYEVMLKSYFLDDDMPQQAVAIPLRSYSAVRGVEA
RLREHGFYTAYHYIVPKVSLVLAK*
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mRNA from alignment at S-dermatodea_contig8227:6727..9209-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8227.16421.1 ID=mRNA_S-dermatodea_contig8227.16421.1|Name=mRNA_S-dermatodea_contig8227.16421.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2483bp|location=Sequence derived from alignment at S-dermatodea_contig8227:6727..9209- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCTTGGTGGTGTTCGCGGACAAGGCGGGCTACGACAAAGCGATGGTGGA
AATCTTTCGAATCTTCGGAGTCAACATCAAGGGCGTCTCGGTGACGACCC
ACCCCGCCGAGGCTTGCCGGACCGTTTATGTTGAGAATACCGGCATGAGG
ACGGGTTTAAACCTGGTGGGTAAAATCAACGAAGTCCTACAGCCGCACTA
CGAGGTATGGTTCATACTGCACCCGCACTCCTTTCCTTCCTCTATTTCTT
CTGTTTCTGTTTCTGTTGCTATTTCTATTTCTAGAGCATCTCTCGCTGCT
CGCGTTCCGTGTCCCTGCCGCTTAAGAGCTGGCGATTGGTAGAGAGGCGA
GGAGGCGTTGTCCGATTCCGATTCCGATTCCTCTTCTGCCCGTTGTTCTA
TATCTGGGAGTTTATTGTTGTCCATTCTTGCGCTATAGTAAGTACCAGCG
TTTTCCTATATCTGTTGTCCATTCTTGCGCTATAGTAAGTACCAGGGGTT
TCGATTCCTCTTCTGGCGTTGTTCTATATCTAGGAGCGGTTCTATGTGTT
CATTTCTTGCGCTATAGTAAATACCAGGGACGGTTTTCTGCATTGTTGTA
GAAGTAGAGTTGTGATTGATTGTTTTCTCCTTGACTCTTCACGCGTCTGG
CCACAGGTCGGGTCGATCGGCTATGCGTGTACTAACGGATCTCAATCAAT
CAATCAATCAACTTATAAACACTGTCTATACAATTCAGCGCGAGAGGGAA
CTGAGCTGGCGTAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGGTT
GTGGTGGTGTTGATGGTGGTAGTGAAGGTATCACCTTGCTGATCGGTGTC
GCAAGGTGAATGGATAAAAGGGGAACACGAAACATAACACACACTCGAAA
ACACAAAAAGGCGTGCGTTTCGTCGAGTCGCTTGCACAAGGAAGTTGCAA
GACGGCGAAGAGCTTCATTTTTTCCCTCGCATAGTTGGGTTTCAGATTTT
TCATTGATTGATTTCTTGAACTACGGTTGTCATCCCCCTCCCCCATGTGT
GTTTATTAACCAACTTCGGCAAAGTAGGAAGGAACGATTGGCCATCGTCG
ATCGACCCTGAGGGTGGGCGCAATGCTCCGTCCTTCTGAGAACGCGTGGT
CGACGCCCTAATAGCTAAGGCGTGCAAAACTTGAGCCCCCCCCCCCCCCC
CACCACCACCCCCCCCGCGTATGCTTCTCCAGGTGATGCTCAAGTCCTAC
TTCCTCGACGACGACATGCCTCAGGTGCGGCTGTGTGTGTGTTTTCTCTG
TGTGTCTCTCTATTTTCCGTGTTTTGTCTTTTCTTACTTGGTTTTAGTCA
TTTTTATACAATTTGTTTGTTTTGTTTTAGCGAGTGTTTCCGTTTGCCTT
ATAATTTTTAAGCCAGGACGTCGTACATGCACACGCAAGTAGTAACAGTG
TTTCCGATACCATTCATCCCGTGGCTGTCGGCGCCTTTGCTGGAGGGATC
GTGATCATCGTCATTATTATGGTCGTCATTGAATGCGATGGGTGGTCCTG
TATGTTCCGACACGGTCGAAATTGGCGACCTCCAAACATCCATGATCCCC
AAAGCGAAATCGAACCCCAGCGGTTAGGAGCGGAAGACAAGCGACGAGGT
CCCTCCGCGGCGTCCGCCCTGCCTGAAACACTCGCGTTGGTGATGTGTTT
AACCCTATTTGCGCCCGATGAGCAGCAATGCGAGCGGTCGATGCGGGCGG
TCGGCGGTAGTCGACCTTCGTCTATTTTTTCTTTTAGATCACAGCTACAA
CCGACCGGCCCGCCATTGGGTTGGCGATCCCGCTCGTGATCAGAGCATAT
ACCGACAAACCGATAACATAAAAGTCACGGAATTACCTGTAGAAAATACA
AGAAAGAGTTAACAAAAACAAAAGTTCGGAAACATACCTCGGAACTTGGG
TGCGGCGAGGTGAACATCAATCAGACCAATCAACCAATCAATCATCAACC
AATCAAACCAGCCAAATCGATCAATAAAATCAACCAACCCGCTACATCAA
TCAATCTAATCAGCCAATCAACTACGTCAATAACTAAAATCAACCAACCA
ACTATCGATCAAATATATCCAACCTTCGGAGACACGCGCCTAACGCATGT
TGCACATACGCATGTTTCACATACAAACGGCACACTTTCGCACCCACTTG
TTCGAACTTACGCATAGACTTGGCCCCCAAAAACAGCGGTACAGTGCATT
TTCGCAGCCAACAACCCCGATTTGTTTCGTAGGGCACCCTTTTCCCTGTG
CTCACACGCCGTTGTTGACACGCCGCTATGCGCCAAACGTGAACACACCA
CAAGCAGGCGGTCGCGATCCCCCTCAGATCCTACTCGGCGGTAAGGGGGG
TCGAAGCACGTCTGAGGGAGCACGGGTTCTACACCGCCTATCACTACATC
GTGCCGAAGGTGAGCCTCGTCTTGGCGAAATGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8227:6727..9209-

>mRNA_S-dermatodea_contig8227.16421.1 ID=mRNA_S-dermatodea_contig8227.16421.1|Name=mRNA_S-dermatodea_contig8227.16421.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at S-dermatodea_contig8227:6727..9209- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCTTGGTGGTGTTCGCGGACAAGGCGGGCTACGACAAAGCGATGGTGGA
AATCTTTCGAATCTTCGGAGTCAACATCAAGGGCGTCTCGGTGACGACCC
ACCCCGCCGAGGCTTGCCGGACCGTTTATGTTGAGAATACCGGCATGAGG
ACGGGTTTAAACCTGGTGGGTAAAATCAACGAAGTCCTACAGCCGCACTA
CGAGGGCTTGGTGGTGTTCGCGGACAAGGCGGGCTACGACAAAGCGATGG
TGGAAATCTTTCGAATCTTCGGAGTCAACATCAAGGGCGTCTCGGTGACG
ACCCACCCCGCCGAGGCTTGCCGGACCGTTTATGTTGAGAATACCGGCAT
GAGGACGGGTTTAAACCTGGTGGGTAAAATCAACGAAGTCCTACAGCCGC
ACTACGAGGTGATGCTCAAGTCCTACTTCCTCGACGACGACATGCCTCAG
GTGATGCTCAAGTCCTACTTCCTCGACGACGACATGCCTCAGCAGGCGGT
CGCGATCCCCCTCAGATCCTACTCGGCGGTAAGGGGGGTCGAAGCACGTC
TGAGGGAGCACGGGTTCTACACCGCCTATCACTACATCGTGCCGAAGGTG
AGCCTCGTCTTGGCGAAATGACAGGCGGTCGCGATCCCCCTCAGATCCTA
CTCGGCGGTAAGGGGGGTCGAAGCACGTCTGAGGGAGCACGGGTTCTACA
CCGCCTATCACTACATCGTGCCGAAGGTGAGCCTCGTCTTGGCGAAATGA
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