mRNA_S-dermatodea_contig8222.16417.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8222.16417.1
Unique NamemRNA_S-dermatodea_contig8222.16417.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8222.16417.1 vs. uniprot
Match: A0A6H5KUZ2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUZ2_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 6.250e-14
Identity = 45/63 (71.43%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:  403 ASTSDSNG---GGGEVGEEISKIREVRMTAGQIKAELDSLGVSYVGLLEKSEFVQKLAEARAD 582
            A+  D+ G   G G V E+ +KIRE RMTAGQIKAELD LGVSYVGLLEKSEFV KLAEAR D
Sbjct:  517 AADDDAEGQASGSGGVDEQAAKIREARMTAGQIKAELDVLGVSYVGLLEKSEFVMKLAEARVD 579
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BLAST of mRNA_S-dermatodea_contig8222.16417.1 vs. uniprot
Match: D7G5D2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D2_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 9.720e-13
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:  427 GGGEVGEEISKIREVRMTAGQIKAELDSLGVSYVGLLEKSEFVQKLAEA 573
            GGG VG   +KIRE RMTAGQIKAELD+LGVSYV LLEKSEFV KLAEA
Sbjct:  256 GGGGVGARAAKIREARMTAGQIKAELDALGVSYVSLLEKSEFVMKLAEA 304
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BLAST of mRNA_S-dermatodea_contig8222.16417.1 vs. uniprot
Match: D7G4D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D5_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 4.550e-12
Identity = 38/48 (79.17%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:  439 VGEEISKIREVRMTAGQIKAELDSLGVSYVGLLEKSEFVQKLAEARAD 582
            V  + +KIRE RMTAGQIKAELD+LGV YVGLLEKSEFV KLAEAR D
Sbjct:  525 VDAQAAKIREARMTAGQIKAELDALGVGYVGLLEKSEFVMKLAEARVD 572
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8222.16417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KUZ2_9PHAE6.250e-1471.43Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7G5D2_ECTSI9.720e-1381.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4D5_ECTSI4.550e-1279.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8222contigS-dermatodea_contig8222:8303..8884 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue9e-11
Seed eggNOG ortholog2880.D7G4D5
KEGG koko:K22262
EggNOG free text desc.platelet formation
EggNOG OGsKOG1787@1,KOG1787@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size582
Cds size582
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925329.2979167-CDS-S-dermatodea_contig8222:8302..88841622925329.2979167-CDS-S-dermatodea_contig8222:8302..8884Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8222 8303..8884 +
1694079859.2883766-CDS-S-dermatodea_contig8222:8302..88841694079859.2883766-CDS-S-dermatodea_contig8222:8302..8884Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8222 8303..8884 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8222.16417.1prot_S-dermatodea_contig8222.16417.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8222 8303..8884 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8222.16417.1

>prot_S-dermatodea_contig8222.16417.1 ID=prot_S-dermatodea_contig8222.16417.1|Name=mRNA_S-dermatodea_contig8222.16417.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=194bp
EKSDAPPASEPIPKQEPEPELKLEPEPEPEPETESKSEPEPEPESEPEPE
PEPEPEPEPEPEPEPEPEPEPEPEPGPEPEPEPEPEPEPEPEPKPEPEPE
PEPEPEAEAEEGPKQEDETRAEPEPEQAAAEEGPASTSDSNGGGGEVGEE
ISKIREVRMTAGQIKAELDSLGVSYVGLLEKSEFVQKLAEARAD
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mRNA from alignment at S-dermatodea_contig8222:8303..8884+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8222.16417.1 ID=mRNA_S-dermatodea_contig8222.16417.1|Name=mRNA_S-dermatodea_contig8222.16417.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=582bp|location=Sequence derived from alignment at S-dermatodea_contig8222:8303..8884+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGAAGAGTGATGCGCCGCCGGCATCCGAACCGATACCGAAACAGGAGCC
TGAGCCGGAACTCAAGCTGGAACCGGAACCGGAACCTGAACCGGAAACCG
AATCAAAATCTGAACCAGAACCGGAGCCGGAATCGGAGCCGGAACCTGAA
CCTGAACCTGAACCGGAACCGGAACCTGAACCTGAACCGGAACCGGAACC
AGAACCAGAGCCTGAACCGGAGCCGGGACCGGAGCCGGAACCGGAACCGG
AACCGGAACCGGAACCGGAACCGGAGCCTAAACCGGAACCTGAGCCGGAG
CCGGAGCCGGAGCCGGAAGCGGAAGCGGAAGAAGGGCCTAAACAAGAGGA
TGAAACGAGAGCCGAGCCCGAACCGGAACAAGCAGCGGCAGAGGAAGGTC
CCGCCTCTACGTCGGATAGTAACGGCGGCGGCGGGGAAGTGGGCGAAGAG
ATTTCTAAAATCAGGGAAGTCCGGATGACCGCAGGTCAGATCAAGGCGGA
GCTGGACTCGCTCGGGGTCAGCTACGTGGGTCTCTTAGAGAAGTCGGAGT
TCGTGCAGAAGTTGGCGGAGGCCAGGGCGGAT
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Coding sequence (CDS) from alignment at S-dermatodea_contig8222:8303..8884+

>mRNA_S-dermatodea_contig8222.16417.1 ID=mRNA_S-dermatodea_contig8222.16417.1|Name=mRNA_S-dermatodea_contig8222.16417.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1164bp|location=Sequence derived from alignment at S-dermatodea_contig8222:8303..8884+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGAAGAGTGATGCGCCGCCGGCATCCGAACCGATACCGAAACAGGAGCC
TGAGCCGGAACTCAAGCTGGAACCGGAACCGGAACCTGAACCGGAAACCG
AATCAAAATCTGAACCAGAACCGGAGCCGGAATCGGAGCCGGAACCTGAA
CCTGAACCTGAACCGGAACCGGAACCTGAACCTGAACCGGAACCGGAACC
AGAACCAGAGCCTGAACCGGAGCCGGGACCGGAGCCGGAACCGGAACCGG
AACCGGAACCGGAACCGGAACCGGAGCCTAAACCGGAACCTGAGCCGGAG
CCGGAGCCGGAGCCGGAAGCGGAAGCGGAAGAAGGGCCTAAACAAGAGGA
TGAAACGAGAGCCGAGCCCGAACCGGAACAAGCAGCGGCAGAGGAAGGTC
CCGCCTCTACGTCGGATAGTAACGGCGGCGGCGGGGAAGTGGGCGAAGAG
ATTTCTAAAATCAGGGAAGTCCGGATGACCGCAGGTCAGATCAAGGCGGA
GCTGGACTCGCTCGGGGTCAGCTACGTGGGTCTCTTAGAGAAGTCGGAGT
TCGTGCAGAAGTTGGCGGAGGCCAGGGCGGATGAGAAGAGTGATGCGCCG
CCGGCATCCGAACCGATACCGAAACAGGAGCCTGAGCCGGAACTCAAGCT
GGAACCGGAACCGGAACCTGAACCGGAAACCGAATCAAAATCTGAACCAG
AACCGGAGCCGGAATCGGAGCCGGAACCTGAACCTGAACCTGAACCGGAA
CCGGAACCTGAACCTGAACCGGAACCGGAACCAGAACCAGAGCCTGAACC
GGAGCCGGGACCGGAGCCGGAACCGGAACCGGAACCGGAACCGGAACCGG
AACCGGAGCCTAAACCGGAACCTGAGCCGGAGCCGGAGCCGGAGCCGGAA
GCGGAAGCGGAAGAAGGGCCTAAACAAGAGGATGAAACGAGAGCCGAGCC
CGAACCGGAACAAGCAGCGGCAGAGGAAGGTCCCGCCTCTACGTCGGATA
GTAACGGCGGCGGCGGGGAAGTGGGCGAAGAGATTTCTAAAATCAGGGAA
GTCCGGATGACCGCAGGTCAGATCAAGGCGGAGCTGGACTCGCTCGGGGT
CAGCTACGTGGGTCTCTTAGAGAAGTCGGAGTTCGTGCAGAAGTTGGCGG
AGGCCAGGGCGGAT
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