mRNA_S-dermatodea_contig82181.16415.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig82181.16415.1
Unique NamemRNA_S-dermatodea_contig82181.16415.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig82181.16415.1 vs. uniprot
Match: A0A6H5KUD6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KUD6_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.240e-17
Identity = 37/40 (92.50%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    1 YTQGESKVQPGFTFMDISDRYVIARGAGGGLALWLRQDTI 120
            Y QGESKV PGFTFMDISDRYVIARGAGGGLALWLRQDT+
Sbjct:  228 YNQGESKVPPGFTFMDISDRYVIARGAGGGLALWLRQDTV 267
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BLAST of mRNA_S-dermatodea_contig82181.16415.1 vs. uniprot
Match: A0A7S2XGI9_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XGI9_9EUKA)

HSP 1 Score: 47.0 bits (110), Expect = 1.840e-5
Identity = 18/34 (52.94%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:   13 ESKVQPGFTFMDISDRYVIARGAGGGLALWLRQD 114
            E   QP F F+ + D+ ++ARGAGGG+ALW+R+D
Sbjct:   72 EYNKQPAFNFIAVDDKVLVARGAGGGVALWVRED 105
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig82181.16415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KUD6_9PHAE1.240e-1792.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2XGI9_9EUKA1.840e-552.94Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig82181contigS-dermatodea_contig82181:154..276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue9.1e-14
Seed eggNOG ortholog2880.D7FN82
EggNOG OGs28KDC@1,2QSU6@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-15_003310.1
Exons1
Model size123
Cds size123
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925329.2650292-CDS-S-dermatodea_contig82181:153..2761622925329.2650292-CDS-S-dermatodea_contig82181:153..276Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82181 154..276 -
1694079859.277075-CDS-S-dermatodea_contig82181:153..2761694079859.277075-CDS-S-dermatodea_contig82181:153..276Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82181 154..276 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig82181.16415.1prot_S-dermatodea_contig82181.16415.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig82181 154..276 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig82181.16415.1

>prot_S-dermatodea_contig82181.16415.1 ID=prot_S-dermatodea_contig82181.16415.1|Name=mRNA_S-dermatodea_contig82181.16415.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=41bp
YTQGESKVQPGFTFMDISDRYVIARGAGGGLALWLRQDTI*
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mRNA from alignment at S-dermatodea_contig82181:154..276-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig82181.16415.1 ID=mRNA_S-dermatodea_contig82181.16415.1|Name=mRNA_S-dermatodea_contig82181.16415.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=123bp|location=Sequence derived from alignment at S-dermatodea_contig82181:154..276- (Saccorhiza dermatodea SderLu1190fm monoicous)
TACACGCAGGGGGAGAGCAAGGTGCAGCCGGGGTTCACGTTCATGGACAT
ATCGGATCGTTACGTTATCGCGCGAGGAGCGGGCGGGGGGCTCGCGCTCT
GGCTTCGGCAAGACACCATCTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig82181:154..276-

>mRNA_S-dermatodea_contig82181.16415.1 ID=mRNA_S-dermatodea_contig82181.16415.1|Name=mRNA_S-dermatodea_contig82181.16415.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=246bp|location=Sequence derived from alignment at S-dermatodea_contig82181:154..276- (Saccorhiza dermatodea SderLu1190fm monoicous)
TACACGCAGGGGGAGAGCAAGGTGCAGCCGGGGTTCACGTTCATGGACAT
ATCGGATCGTTACGTTATCGCGCGAGGAGCGGGCGGGGGGCTCGCGCTCT
GGCTTCGGCAAGACACCATCTAGTACACGCAGGGGGAGAGCAAGGTGCAG
CCGGGGTTCACGTTCATGGACATATCGGATCGTTACGTTATCGCGCGAGG
AGCGGGCGGGGGGCTCGCGCTCTGGCTTCGGCAAGACACCATCTAG
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