mRNA_S-dermatodea_contig8218.16414.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8218.16414.1
Unique NamemRNA_S-dermatodea_contig8218.16414.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8218.16414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8218contigS-dermatodea_contig8218:270..774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size506
Cds size351
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925329.2169743-CDS-S-dermatodea_contig8218:269..6201622925329.2169743-CDS-S-dermatodea_contig8218:269..620Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8218 270..620 +
1694079859.2490263-CDS-S-dermatodea_contig8218:269..6201694079859.2490263-CDS-S-dermatodea_contig8218:269..620Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8218 270..620 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925329.2275548-UTR-S-dermatodea_contig8218:620..7741622925329.2275548-UTR-S-dermatodea_contig8218:620..774Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8218 621..774 +
1694079859.2652628-UTR-S-dermatodea_contig8218:620..7741694079859.2652628-UTR-S-dermatodea_contig8218:620..774Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8218 621..774 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8218.16414.1prot_S-dermatodea_contig8218.16414.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8218 270..620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8218.16414.1

>prot_S-dermatodea_contig8218.16414.1 ID=prot_S-dermatodea_contig8218.16414.1|Name=mRNA_S-dermatodea_contig8218.16414.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=117bp
AVPAATLGESSWADALSAAALGDVPWLAPPEAVLGNPSPARALSGAWLAP
PGAGLGGVCLSRKPKLAHPSLFAVFSLAALPLSAAVFGPVLLEPGLLAEP
FGRPPFFAVPLIRAGD*
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mRNA from alignment at S-dermatodea_contig8218:270..774+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8218.16414.1 ID=mRNA_S-dermatodea_contig8218.16414.1|Name=mRNA_S-dermatodea_contig8218.16414.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=505bp|location=Sequence derived from alignment at S-dermatodea_contig8218:270..774+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTGTGCCAGCTGCCACACTTGGCGAATCATCCTGGGCTGATGCGCTTTC
TGCTGCTGCACTTGGTGATGTGCCTTGGCTCGCTCCTCCCGAGGCTGTGC
TTGGCAATCCATCGCCTGCGCGTGCGCTTAGCGGTGCCTGGCTCGCTCCT
CCCGGCGCTGGGCTTGGCGGTGTCTGCCTGAGCAGGAAGCCAAAACTGGC
CCACCCCTCGCTGTTCGCAGTCTTCTCCCTGGCAGCCTTGCCTCTATCCG
CCGCAGTTTTCGGGCCTGTCCTATTGGAACCGGGCTTGCTCGCCGAACCC
TTTGGTCGGCCGCCCTTCTTCGCCGTACCGCTCATCAGAGCGGGTGACTG
AAGGTGTGTCTGCCGTGTGCCTGCTCGTCTGCTCGCTCAAAGCAATGCAT
GTAGCGTCGGGGTCCCCCTTGCACGCGGTCTTTTCTGGTCATATACCATC
TGTGAGGCATTTGATTGGCTGTGTTTTACAATGAGTTGCAATGGTACTCC
TTTCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8218:270..774+

>mRNA_S-dermatodea_contig8218.16414.1 ID=mRNA_S-dermatodea_contig8218.16414.1|Name=mRNA_S-dermatodea_contig8218.16414.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at S-dermatodea_contig8218:270..774+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTGTGCCAGCTGCCACACTTGGCGAATCATCCTGGGCTGATGCGCTTTC
TGCTGCTGCACTTGGTGATGTGCCTTGGCTCGCTCCTCCCGAGGCTGTGC
TTGGCAATCCATCGCCTGCGCGTGCGCTTAGCGGTGCCTGGCTCGCTCCT
CCCGGCGCTGGGCTTGGCGGTGTCTGCCTGAGCAGGAAGCCAAAACTGGC
CCACCCCTCGCTGTTCGCAGTCTTCTCCCTGGCAGCCTTGCCTCTATCCG
CCGCAGTTTTCGGGCCTGTCCTATTGGAACCGGGCTTGCTCGCCGAACCC
TTTGGTCGGCCGCCCTTCTTCGCCGTACCGCTCATCAGAGCGGGTGACTG
AGCTGTGCCAGCTGCCACACTTGGCGAATCATCCTGGGCTGATGCGCTTT
CTGCTGCTGCACTTGGTGATGTGCCTTGGCTCGCTCCTCCCGAGGCTGTG
CTTGGCAATCCATCGCCTGCGCGTGCGCTTAGCGGTGCCTGGCTCGCTCC
TCCCGGCGCTGGGCTTGGCGGTGTCTGCCTGAGCAGGAAGCCAAAACTGG
CCCACCCCTCGCTGTTCGCAGTCTTCTCCCTGGCAGCCTTGCCTCTATCC
GCCGCAGTTTTCGGGCCTGTCCTATTGGAACCGGGCTTGCTCGCCGAACC
CTTTGGTCGGCCGCCCTTCTTCGCCGTACCGCTCATCAGAGCGGGTGACT
GA
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