mRNA_S-dermatodea_contig821.16406.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig821.16406.1
Unique NamemRNA_S-dermatodea_contig821.16406.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig821.16406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig821contigS-dermatodea_contig821:5012..6016 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1006
Cds size705
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925328.6957085-CDS-S-dermatodea_contig821:5011..57161622925328.6957085-CDS-S-dermatodea_contig821:5011..5716Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig821 5012..5716 +
1694079858.8683622-CDS-S-dermatodea_contig821:5011..57161694079858.8683622-CDS-S-dermatodea_contig821:5011..5716Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig821 5012..5716 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925328.7104132-UTR-S-dermatodea_contig821:5716..60161622925328.7104132-UTR-S-dermatodea_contig821:5716..6016Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig821 5717..6016 +
1694079858.8888757-UTR-S-dermatodea_contig821:5716..60161694079858.8888757-UTR-S-dermatodea_contig821:5716..6016Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig821 5717..6016 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig821.16406.1prot_S-dermatodea_contig821.16406.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig821 5012..5716 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig821.16406.1

>prot_S-dermatodea_contig821.16406.1 ID=prot_S-dermatodea_contig821.16406.1|Name=mRNA_S-dermatodea_contig821.16406.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=235bp
RNRRQRRHCSSHHPCCCPSPHSSRRPCRRCLCHYCLSRRGSTGCAGAVAA
ETGAGSGADPIGADRIGDDRIGDDRKGDDRTGADRTGADRTGADPYVGRP
CADPTGVDPGADPGGNPGAALGAAAAGAGGSVAVGAADRTLAAAVAAAVA
GTQPEDAAAEQPRTRPGAAEPPETGGRVAARTAAAAARTRFGRASAAEAW
TGAAAGRGPLSSRFLSLPLPRPTARPLQARRPLP*
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mRNA from alignment at S-dermatodea_contig821:5012..6016+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig821.16406.1 ID=mRNA_S-dermatodea_contig821.16406.1|Name=mRNA_S-dermatodea_contig821.16406.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1005bp|location=Sequence derived from alignment at S-dermatodea_contig821:5012..6016+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGTAATCGGCGACAACGCCGCCACTGTTCCTCCCACCACCCCTGTTGCTG
TCCCTCCCCCCACTCCTCCCGCCGCCCCTGCCGTCGCTGTCTCTGCCACT
ACTGCTTGAGCCGCCGGGGTAGTACTGGTTGCGCTGGGGCTGTTGCTGCT
GAGACTGGCGCTGGGTCTGGCGCTGATCCGATTGGCGCTGATCGGATTGG
CGATGATCGGATTGGCGATGATCGGAAAGGCGATGATCGGACTGGCGCTG
ATCGGACTGGCGCTGATCGGACTGGCGCTGACCCTTACGTTGGCCGCCCG
TGCGCTGATCCGACTGGCGTTGATCCTGGCGCTGATCCTGGCGGTAATCC
TGGCGCTGCTCTTGGCGCGGCTGCTGCTGGCGCTGGCGGCTCTGTCGCGG
TTGGTGCCGCTGACCGTACTCTTGCTGCTGCTGTGGCTGCTGCTGTTGCT
GGTACACAACCTGAGGATGCTGCTGCTGAGCAACCGCGTACACGACCTGG
TGCTGCGGAGCCGCCTGAGACTGGAGGGCGAGTTGCTGCGCGTACTGCTG
CTGCTGCTGCACGGACGCGGTTTGGCCGTGCATCGGCAGCTGAAGCGTGG
ACTGGGGCTGCTGCTGGGCGTGGACCGCTATCGTCCCGTTTCCTGAGCCT
CCCCCTCCCCCGGCCCACTGCGCGGCCGCTGCAGGCGAGGCGACCGTTAC
CATGACGGGCTGGGCTACCGTCTGCCCCTGAGAAGACATCATGCCCGCGA
ATTGCGCTTGCTGGAATCCCCCCGCATAGCCGGACTGCGTCGCGGCGGCC
CCCTGCTGGACGATCATGCCTTGGAGCTGCTGGGGGGCGGGGTGAGCCGC
ATATTGCACGGATTGGGATTGCTGGGGAGATGGCGACCAAGGATTTGCCG
CGACATTGAGTTCCCCCGAGCTACCGTTTCCCCGCCCTCCCGCCGCCGTA
TCCCAGCTCATACTTCTCGTTGGATCACCCCGCTCGTCCAGACCAAGGAT
CGCCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig821:5012..6016+

>mRNA_S-dermatodea_contig821.16406.1 ID=mRNA_S-dermatodea_contig821.16406.1|Name=mRNA_S-dermatodea_contig821.16406.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1410bp|location=Sequence derived from alignment at S-dermatodea_contig821:5012..6016+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGTAATCGGCGACAACGCCGCCACTGTTCCTCCCACCACCCCTGTTGCTG
TCCCTCCCCCCACTCCTCCCGCCGCCCCTGCCGTCGCTGTCTCTGCCACT
ACTGCTTGAGCCGCCGGGGTAGTACTGGTTGCGCTGGGGCTGTTGCTGCT
GAGACTGGCGCTGGGTCTGGCGCTGATCCGATTGGCGCTGATCGGATTGG
CGATGATCGGATTGGCGATGATCGGAAAGGCGATGATCGGACTGGCGCTG
ATCGGACTGGCGCTGATCGGACTGGCGCTGACCCTTACGTTGGCCGCCCG
TGCGCTGATCCGACTGGCGTTGATCCTGGCGCTGATCCTGGCGGTAATCC
TGGCGCTGCTCTTGGCGCGGCTGCTGCTGGCGCTGGCGGCTCTGTCGCGG
TTGGTGCCGCTGACCGTACTCTTGCTGCTGCTGTGGCTGCTGCTGTTGCT
GGTACACAACCTGAGGATGCTGCTGCTGAGCAACCGCGTACACGACCTGG
TGCTGCGGAGCCGCCTGAGACTGGAGGGCGAGTTGCTGCGCGTACTGCTG
CTGCTGCTGCACGGACGCGGTTTGGCCGTGCATCGGCAGCTGAAGCGTGG
ACTGGGGCTGCTGCTGGGCGTGGACCGCTATCGTCCCGTTTCCTGAGCCT
CCCCCTCCCCCGGCCCACTGCGCGGCCGCTGCAGGCGAGGCGACCGTTAC
CATGACGTAATCGGCGACAACGCCGCCACTGTTCCTCCCACCACCCCTGT
TGCTGTCCCTCCCCCCACTCCTCCCGCCGCCCCTGCCGTCGCTGTCTCTG
CCACTACTGCTTGAGCCGCCGGGGTAGTACTGGTTGCGCTGGGGCTGTTG
CTGCTGAGACTGGCGCTGGGTCTGGCGCTGATCCGATTGGCGCTGATCGG
ATTGGCGATGATCGGATTGGCGATGATCGGAAAGGCGATGATCGGACTGG
CGCTGATCGGACTGGCGCTGATCGGACTGGCGCTGACCCTTACGTTGGCC
GCCCGTGCGCTGATCCGACTGGCGTTGATCCTGGCGCTGATCCTGGCGGT
AATCCTGGCGCTGCTCTTGGCGCGGCTGCTGCTGGCGCTGGCGGCTCTGT
CGCGGTTGGTGCCGCTGACCGTACTCTTGCTGCTGCTGTGGCTGCTGCTG
TTGCTGGTACACAACCTGAGGATGCTGCTGCTGAGCAACCGCGTACACGA
CCTGGTGCTGCGGAGCCGCCTGAGACTGGAGGGCGAGTTGCTGCGCGTAC
TGCTGCTGCTGCTGCACGGACGCGGTTTGGCCGTGCATCGGCAGCTGAAG
CGTGGACTGGGGCTGCTGCTGGGCGTGGACCGCTATCGTCCCGTTTCCTG
AGCCTCCCCCTCCCCCGGCCCACTGCGCGGCCGCTGCAGGCGAGGCGACC
GTTACCATGA
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