mRNA_S-dermatodea_contig82057.16398.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig82057.16398.1
Unique NamemRNA_S-dermatodea_contig82057.16398.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig82057.16398.1 vs. uniprot
Match: D8LNW5_ECTSI (Proline--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNW5_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 4.150e-23
Identity = 45/48 (93.75%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:    1 SQSGEDDLEEPIAVRPTSETIMYPAFSKWIRSHRDLPLKLNQWSNVVR 144
            ++SGEDDLEEPIAVRPTSETIMYPAFS+WIRSHRDLPLKLNQWSNVVR
Sbjct:  500 TKSGEDDLEEPIAVRPTSETIMYPAFSRWIRSHRDLPLKLNQWSNVVR 547
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BLAST of mRNA_S-dermatodea_contig82057.16398.1 vs. uniprot
Match: A0A3S5BM63_9PLAT (Hypothetical protein n=1 Tax=Protopolystoma xenopodis TaxID=117903 RepID=A0A3S5BM63_9PLAT)

HSP 1 Score: 88.2 bits (217), Expect = 6.900e-22
Identity = 37/48 (77.08%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:    1 SQSGEDDLEEPIAVRPTSETIMYPAFSKWIRSHRDLPLKLNQWSNVVR 144
            ++SG  +L EP+A+RPTSETIMYP+F+KWI+SHRDLPLKLNQWSNVVR
Sbjct:   10 TRSGSSELSEPVAIRPTSETIMYPSFAKWIQSHRDLPLKLNQWSNVVR 57
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BLAST of mRNA_S-dermatodea_contig82057.16398.1 vs. uniprot
Match: A0A7S1WEE7_ALECA (Proline--tRNA ligase (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WEE7_ALECA)

HSP 1 Score: 89.7 bits (221), Expect = 7.000e-22
Identity = 39/48 (81.25%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:    1 SQSGEDDLEEPIAVRPTSETIMYPAFSKWIRSHRDLPLKLNQWSNVVR 144
            ++SG  DL +PIA+RPTSETIMYPAF+KWIRSHRDLPLKLNQW+NVVR
Sbjct:   18 TKSGNSDLAKPIAIRPTSETIMYPAFAKWIRSHRDLPLKLNQWANVVR 65
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BLAST of mRNA_S-dermatodea_contig82057.16398.1 vs. uniprot
Match: A0A7S2U994_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U994_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.480e-21
Identity = 39/48 (81.25%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:    1 SQSGEDDLEEPIAVRPTSETIMYPAFSKWIRSHRDLPLKLNQWSNVVR 144
            ++SG+ +L +PIAVRPTSETIMYPAFS WI+SHRDLPLKLNQWSNVVR
Sbjct:   53 TRSGDGELAKPIAVRPTSETIMYPAFSDWIKSHRDLPLKLNQWSNVVR 100
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BLAST of mRNA_S-dermatodea_contig82057.16398.1 vs. uniprot
Match: A0A067FKC4_CITSI (Proline--tRNA ligase (Fragment) n=1 Tax=Citrus sinensis TaxID=2711 RepID=A0A067FKC4_CITSI)

HSP 1 Score: 89.0 bits (219), Expect = 4.370e-21
Identity = 39/48 (81.25%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:    1 SQSGEDDLEEPIAVRPTSETIMYPAFSKWIRSHRDLPLKLNQWSNVVR 144
            ++SGE DLE PIA+RPTSET+MYP FSKWIR HRDLPLKLNQW NVVR
Sbjct:   69 TKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVR 116
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BLAST of mRNA_S-dermatodea_contig82057.16398.1 vs. uniprot
Match: K0SBF7_THAOC (Proline--tRNA ligase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SBF7_THAOC)

HSP 1 Score: 93.2 bits (230), Expect = 5.590e-21
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:    1 SQSGEDDLEEPIAVRPTSETIMYPAFSKWIRSHRDLPLKLNQWSNVVR 144
            ++SGEDDL  PIA+RPTSETIMYPAFS WIRSHRDLPLKLNQWSNVVR
Sbjct:  114 TKSGEDDLAAPIAIRPTSETIMYPAFSDWIRSHRDLPLKLNQWSNVVR 161
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BLAST of mRNA_S-dermatodea_contig82057.16398.1 vs. uniprot
Match: A0A1X6NK56_PORUM (Proline--tRNA ligase n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NK56_PORUM)

HSP 1 Score: 93.2 bits (230), Expect = 5.980e-21
Identity = 41/48 (85.42%), Postives = 47/48 (97.92%), Query Frame = 1 
Query:    1 SQSGEDDLEEPIAVRPTSETIMYPAFSKWIRSHRDLPLKLNQWSNVVR 144
            ++SG+ D+E+PIAVRPTSETIMYPAF+KWIRSHRDLPLKLNQWSNVVR
Sbjct:  177 TRSGQTDMEKPIAVRPTSETIMYPAFAKWIRSHRDLPLKLNQWSNVVR 224
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BLAST of mRNA_S-dermatodea_contig82057.16398.1 vs. uniprot
Match: A0A3P8BRJ7_9TREM (AA_TRNA_LIGASE_II domain-containing protein n=1 Tax=Schistosoma mattheei TaxID=31246 RepID=A0A3P8BRJ7_9TREM)

HSP 1 Score: 87.4 bits (215), Expect = 6.160e-21
Identity = 37/48 (77.08%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:    1 SQSGEDDLEEPIAVRPTSETIMYPAFSKWIRSHRDLPLKLNQWSNVVR 144
            ++SG+ DL EPIA+RPTSETIMYP F+KWI+SHRDLPL++NQWSNVVR
Sbjct:   75 TKSGDTDLTEPIAIRPTSETIMYPIFAKWIQSHRDLPLRINQWSNVVR 122
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BLAST of mRNA_S-dermatodea_contig82057.16398.1 vs. uniprot
Match: UPI00098E2C21 (proline--tRNA ligase, cytoplasmic-like n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E2C21)

HSP 1 Score: 86.3 bits (212), Expect = 7.270e-21
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:    1 SQSGEDDLEEPIAVRPTSETIMYPAFSKWIRSHRDLPLKLNQWSNVVR 144
            + SG+ +LE PIA+RPTSET+MYP +SKWIRSHRDLPLKLNQW NVVR
Sbjct:   42 TNSGQSELEIPIAIRPTSETVMYPYYSKWIRSHRDLPLKLNQWGNVVR 89
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BLAST of mRNA_S-dermatodea_contig82057.16398.1 vs. uniprot
Match: A0A2V3IXL6_9FLOR (Proline--tRNA ligase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXL6_9FLOR)

HSP 1 Score: 92.8 bits (229), Expect = 8.040e-21
Identity = 42/48 (87.50%), Postives = 47/48 (97.92%), Query Frame = 1 
Query:    1 SQSGEDDLEEPIAVRPTSETIMYPAFSKWIRSHRDLPLKLNQWSNVVR 144
            ++SG+ DLEEPIAVRPTSETIMYPA+SKWIRS+RDLPLKLNQWSNVVR
Sbjct:  155 TKSGKKDLEEPIAVRPTSETIMYPAYSKWIRSYRDLPLKLNQWSNVVR 202
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig82057.16398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNW5_ECTSI4.150e-2393.75Proline--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A3S5BM63_9PLAT6.900e-2277.08Hypothetical protein n=1 Tax=Protopolystoma xenopo... [more]
A0A7S1WEE7_ALECA7.000e-2281.25Proline--tRNA ligase (Fragment) n=1 Tax=Alexandriu... [more]
A0A7S2U994_9STRA2.480e-2181.25Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A067FKC4_CITSI4.370e-2181.25Proline--tRNA ligase (Fragment) n=1 Tax=Citrus sin... [more]
K0SBF7_THAOC5.590e-2187.50Proline--tRNA ligase n=1 Tax=Thalassiosira oceanic... [more]
A0A1X6NK56_PORUM5.980e-2185.42Proline--tRNA ligase n=1 Tax=Porphyra umbilicalis ... [more]
A0A3P8BRJ7_9TREM6.160e-2177.08AA_TRNA_LIGASE_II domain-containing protein n=1 Ta... [more]
UPI00098E2C217.270e-2177.08proline--tRNA ligase, cytoplasmic-like n=1 Tax=Asp... [more]
A0A2V3IXL6_9FLOR8.040e-2187.50Proline--tRNA ligase n=1 Tax=Gracilariopsis chorda... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig82057contigS-dermatodea_contig82057:129..272 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.8
Seed ortholog evalue3.8e-19
Seed eggNOG ortholog2880.D8LNW5
KEGG rclassRC00004,RC00049,RC00055,RC00069,RC00296,RC00523,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K00799,ko:K01120,ko:K01194,ko:K01874,ko:K01881,ko:K15437,ko:K22119
KEGG TC1.A.12.2.2,1.A.12.3.2
KEGG ReactionR00010,R00191,R01234,R03522,R03659,R03661,R04773,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathwayko00230,ko00450,ko00480,ko00500,ko00970,ko00980,ko00982,ko00983,ko01100,ko01524,ko05200,ko05204,ko05225,ko05418,map00230,map00450,map00480,map00500,map00970,map00980,map00982,map00983,map01100,map01524,map05200,map05204,map05225,map05418
KEGG ModuleM00359,M00360
EggNOG free text desc.synthetase
EggNOG OGsCOG0442@1,COG0625@1,KOG0867@2759,KOG4163@2759
EC2.5.1.18,3.1.4.17,3.2.1.28,6.1.1.10,6.1.1.15
COG Functional cat.J
CAZyGH37
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00537,ko01000,ko01007,ko02000,ko03016
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size144
Cds size144
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925328.2528844-CDS-S-dermatodea_contig82057:128..2721622925328.2528844-CDS-S-dermatodea_contig82057:128..272Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82057 129..272 -
1694079858.6016655-CDS-S-dermatodea_contig82057:128..2721694079858.6016655-CDS-S-dermatodea_contig82057:128..272Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82057 129..272 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig82057.16398.1prot_S-dermatodea_contig82057.16398.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig82057 129..272 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig82057.16398.1

>prot_S-dermatodea_contig82057.16398.1 ID=prot_S-dermatodea_contig82057.16398.1|Name=mRNA_S-dermatodea_contig82057.16398.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=48bp
SQSGEDDLEEPIAVRPTSETIMYPAFSKWIRSHRDLPLKLNQWSNVVR
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mRNA from alignment at S-dermatodea_contig82057:129..272-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig82057.16398.1 ID=mRNA_S-dermatodea_contig82057.16398.1|Name=mRNA_S-dermatodea_contig82057.16398.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=144bp|location=Sequence derived from alignment at S-dermatodea_contig82057:129..272- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCGCAGAGCGGCGAAGACGACCTTGAAGAACCGATCGCCGTCCGCCCAAC
CTCGGAGACTATCATGTACCCGGCGTTCTCGAAGTGGATCAGGAGCCACA
GGGACCTGCCGCTCAAGCTCAACCAGTGGAGCAACGTCGTCAGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig82057:129..272-

>mRNA_S-dermatodea_contig82057.16398.1 ID=mRNA_S-dermatodea_contig82057.16398.1|Name=mRNA_S-dermatodea_contig82057.16398.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=288bp|location=Sequence derived from alignment at S-dermatodea_contig82057:129..272- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCGCAGAGCGGCGAAGACGACCTTGAAGAACCGATCGCCGTCCGCCCAAC
CTCGGAGACTATCATGTACCCGGCGTTCTCGAAGTGGATCAGGAGCCACA
GGGACCTGCCGCTCAAGCTCAACCAGTGGAGCAACGTCGTCAGGTCGCAG
AGCGGCGAAGACGACCTTGAAGAACCGATCGCCGTCCGCCCAACCTCGGA
GACTATCATGTACCCGGCGTTCTCGAAGTGGATCAGGAGCCACAGGGACC
TGCCGCTCAAGCTCAACCAGTGGAGCAACGTCGTCAGG
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