mRNA_S-dermatodea_contig8204.16397.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8204.16397.1
Unique NamemRNA_S-dermatodea_contig8204.16397.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig8204.16397.1 vs. uniprot
Match: A0A6H5LAZ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAZ3_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 1.140e-35
Identity = 64/153 (41.83%), Postives = 96/153 (62.75%), Query Frame = 1
Query:    7 SWPDVSKSKNAEVWRGAMRAESEGHEQTGTFSS-QGVPAGVNVITAKWVFSSKTERDGFIIKAKARFVARGFG*KCGVDYFETFAATPSVLSIKVALAIAVQNDWPLYHFDVTQGFVRAPLDTDVFIKLPTGCGRRTGDVVKLGKALYGVKQA 462
            ++ DV  SK    W  AM+ E + H++TGTF+  + +P G   I +KWVFS KT   G I+  KAR VARGF    G+D+  + +A+PS  SIK  +A+A +    L H+DV Q ++ A L  +++++ P GCG  +G VVK+ +ALYG+KQ+
Sbjct:    2 TYKDVMCSKYKVFWEAAMKKEIDDHDKTGTFTKVKELPDGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSEIPGIDFHHSSSASPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKNEIYLRFPEGCGSMSGKVVKVERALYGLKQS 154          
BLAST of mRNA_S-dermatodea_contig8204.16397.1 vs. uniprot
Match: A0A6H5K236_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K236_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 7.450e-35
Identity = 64/155 (41.29%), Postives = 97/155 (62.58%), Query Frame = 1
Query:    1 PNSWPDVSKSKNAEVWRGAMRAESEGHEQTGTFSS-QGVPAGVNVITAKWVFSSKTERDGFIIKAKARFVARGFG*KCGVDYFETFAATPSVLSIKVALAIAVQNDWPLYHFDVTQGFVRAPLDTDVFIKLPTGCGRRTGDVVKLGKALYGVKQA 462
            P ++ DV  SK    W  AM+ E +GH++TGTF+  + +P G   I +KWVFS KT+  G I+  KAR VARGF    G+D+  + +A PS  SI   +A+A +    L H++V Q ++ A L  +++++ P GCG  +G VVK+ +ALYG+KQ+
Sbjct:   16 PMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTKEKGLIVDFKARMVARGFSRIPGIDFHHSSSACPSAASINTVIAVATEKGKMLAHWNVKQAYINAKLKEEIYLRFPEGCGSMSGKVVKVKRALYGLKQS 170          
BLAST of mRNA_S-dermatodea_contig8204.16397.1 vs. uniprot
Match: A0A6H5JK49_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK49_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 1.210e-34
Identity = 68/155 (43.87%), Postives = 99/155 (63.87%), Query Frame = 1
Query:    1 PNSWPDVSKSKNAEVWRGAMRAESEGHEQTGTFSS-QGVPAGVNVITAKWVFSSKTERDGFIIKAKARFVARGFG*KCGVDYFETFAATPSVLSIKVALAIAVQNDWPLYHFDVTQGFVRAPLDTDVFIKLPTGCGRRTGDVVKLGKALYGVKQA 462
            P ++ DV  SK    W  AM+ E +GH++TGTF+  + +P G   I +KWVFSSKT   G I+  KAR VARGF    G+D+  + +A PS  SIK  +A+A +    L H+DV Q ++ A L  +++++LP GCG  +G VVK+ +ALYG+KQ+
Sbjct:  283 PMTYKDVVCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGREAIGSKWVFSSKTNGKGLIVDFKARMVARGFSQIPGIDFHHSSSAFPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRLPEGCGSMSGKVVKVERALYGLKQS 437          
BLAST of mRNA_S-dermatodea_contig8204.16397.1 vs. uniprot
Match: A0A6H5JVQ8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVQ8_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 1.380e-34
Identity = 73/155 (47.10%), Postives = 96/155 (61.94%), Query Frame = 1
Query:    1 PNSWPDVSKSKNAEVWRGAMRAESEGHEQTGTFSS-QGVPAGVNVITAKWVFSSKTERDGFIIKAKARFVARGFG*KCGVDYFETFAATPSVLSIKVALAIAVQNDWPLYHFDVTQGFVRAPLDTDVFIKLPTGCGRRTGDVVKLGKALYGVKQA 462
            P +   V+KS   E W  AMR E +GH  TGTFS   G P G   +++KW F+ KT +DG I+K KAR VARGF     VDYF + +  PS  SIK+ LA+A +    L H+DV Q F  A LD DVF++LP GCG ++  V K  +A+YG+KQ+
Sbjct:  528 PMTVAGVNKSVYREGWEQAMREEFDGHLGTGTFSFVDGTPEGRRPVSSKWRFTWKTNKDGKIVKFKARLVARGFSQTPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHTVAKAERAIYGLKQS 682          
BLAST of mRNA_S-dermatodea_contig8204.16397.1 vs. uniprot
Match: A0A6H5KR39_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR39_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 3.560e-34
Identity = 67/155 (43.23%), Postives = 98/155 (63.23%), Query Frame = 1
Query:    1 PNSWPDVSKSKNAEVWRGAMRAESEGHEQTGTFSS-QGVPAGVNVITAKWVFSSKTERDGFIIKAKARFVARGFG*KCGVDYFETFAATPSVLSIKVALAIAVQNDWPLYHFDVTQGFVRAPLDTDVFIKLPTGCGRRTGDVVKLGKALYGVKQA 462
            P ++ DV  SK   +W  A+  E +GH++TGTFS   G+P G   I+AKW+FS KT   G I+  KAR VARGF    GVD+  + +A PS +SIK  +A++ +N     H+D+ Q +  A L  +++++LP GCG  TG  VK+ +ALYG+KQ+
Sbjct:  117 PLTYKDVLNSKYKVLWEAAIAKEFDGHKKTGTFSEISGLPEGRKAISAKWIFSHKTNEKGLIVDFKARMVARGFSQIPGVDFHHSSSACPSAVSIKTMVAVSTENGRRPVHWDIKQAYTHAKLKEEIYLRLPDGCGVWTGKAVKVERALYGLKQS 271          
BLAST of mRNA_S-dermatodea_contig8204.16397.1 vs. uniprot
Match: A0A6H5K0Q0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Q0_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 4.310e-34
Identity = 67/155 (43.23%), Postives = 98/155 (63.23%), Query Frame = 1
Query:    1 PNSWPDVSKSKNAEVWRGAMRAESEGHEQTGTFSS-QGVPAGVNVITAKWVFSSKTERDGFIIKAKARFVARGFG*KCGVDYFETFAATPSVLSIKVALAIAVQNDWPLYHFDVTQGFVRAPLDTDVFIKLPTGCGRRTGDVVKLGKALYGVKQA 462
            P ++ DV  SK   +W  A+  E +GH++TGTFS   G+P G   I+AKW+FS KT   G I+  KAR VARGF    GVD+  + +A PS +SIK  +A++ +N     H+D+ Q +  A L  +++++LP GCG  TG  VK+ +ALYG+KQ+
Sbjct:  318 PLTYKDVLNSKYKVLWEAAIAKEFDGHKKTGTFSEISGLPEGRKAISAKWIFSHKTNEKGLIVDFKARMVARGFSQIPGVDFHHSSSACPSAVSIKTMVAVSTENGRRPVHWDIKQAYTHAKLKEEIYLRLPDGCGVWTGKAVKVERALYGLKQS 472          
BLAST of mRNA_S-dermatodea_contig8204.16397.1 vs. uniprot
Match: A0A6H5K9E2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9E2_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 4.540e-34
Identity = 67/155 (43.23%), Postives = 98/155 (63.23%), Query Frame = 1
Query:    1 PNSWPDVSKSKNAEVWRGAMRAESEGHEQTGTFSS-QGVPAGVNVITAKWVFSSKTERDGFIIKAKARFVARGFG*KCGVDYFETFAATPSVLSIKVALAIAVQNDWPLYHFDVTQGFVRAPLDTDVFIKLPTGCGRRTGDVVKLGKALYGVKQA 462
            P ++ DV  SK   +W  A+  E +GH++TGTFS   G+P G   I+AKW+FS KT   G I+  KAR VARGF    GVD+  + +A PS +SIK  +A++ +N     H+D+ Q +  A L  +++++LP GCG  TG  VK+ +ALYG+KQ+
Sbjct:  550 PLTYKDVLNSKYKVLWEAAIAKEFDGHKKTGTFSEISGLPEGRKAISAKWIFSHKTNEKGLIVDFKARMVARGFSQIPGVDFHHSSSACPSAVSIKTMVAVSTENGRRPVHWDIKQAYTHAKLKEEIYLRLPDGCGVWTGKAVKVERALYGLKQS 704          
BLAST of mRNA_S-dermatodea_contig8204.16397.1 vs. uniprot
Match: A0A6H5JRY9_9PHAE (CCHC-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY9_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 4.670e-34
Identity = 67/155 (43.23%), Postives = 98/155 (63.23%), Query Frame = 1
Query:    1 PNSWPDVSKSKNAEVWRGAMRAESEGHEQTGTFSS-QGVPAGVNVITAKWVFSSKTERDGFIIKAKARFVARGFG*KCGVDYFETFAATPSVLSIKVALAIAVQNDWPLYHFDVTQGFVRAPLDTDVFIKLPTGCGRRTGDVVKLGKALYGVKQA 462
            P ++ DV  SK   +W  A+  E +GH++TGTFS   G+P G   I+AKW+FS KT   G I+  KAR VARGF    GVD+  + +A PS +SIK  +A++ +N     H+D+ Q +  A L  +++++LP GCG  TG  VK+ +ALYG+KQ+
Sbjct: 1012 PLTYKDVLNSKYKVLWEAAIAKEFDGHKKTGTFSEISGLPEGRKAISAKWIFSHKTNEKGLIVDFKARMVARGFSQIPGVDFHHSSSACPSAVSIKTMVAVSTENGRRPVHWDIKQAYTHAKLKEEIYLRLPDGCGVWTGKAVKVERALYGLKQS 1166          
BLAST of mRNA_S-dermatodea_contig8204.16397.1 vs. uniprot
Match: A0A6H5JNP9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP9_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 4.730e-34
Identity = 66/155 (42.58%), Postives = 96/155 (61.94%), Query Frame = 1
Query:    1 PNSWPDVSKSKNAEVWRGAMRAESEGHEQTGTFSS-QGVPAGVNVITAKWVFSSKTERDGFIIKAKARFVARGFG*KCGVDYFETFAATPSVLSIKVALAIAVQNDWPLYHFDVTQGFVRAPLDTDVFIKLPTGCGRRTGDVVKLGKALYGVKQA 462
            P ++ DV  SK    W  AM+ E +GH++TGTF+  + +P G   I +KWVFS KT   G I+  KAR VARGF    G+D+  +F+A PS  SIK  +A+A +    L H+DV Q +  A L  +++++ P GCG  +G VVK+ +ALYG+K +
Sbjct:  108 PMTYKDVMCSKCKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIHGIDFHHSFSACPSAASIKTVIAVATEKGKNLAHWDVKQAYTHAKLKEEIYLRFPEGCGCMSGKVVKVERALYGLKHS 262          
BLAST of mRNA_S-dermatodea_contig8204.16397.1 vs. uniprot
Match: A0A6H5JUN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN0_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 1.260e-33
Identity = 65/155 (41.94%), Postives = 97/155 (62.58%), Query Frame = 1
Query:    1 PNSWPDVSKSKNAEVWRGAMRAESEGHEQTGTFSS-QGVPAGVNVITAKWVFSSKTERDGFIIKAKARFVARGFG*KCGVDYFETFAATPSVLSIKVALAIAVQNDWPLYHFDVTQGFVRAPLDTDVFIKLPTGCGRRTGDVVKLGKALYGVKQA 462
            P ++ DV  SK    W  AM+ E +GH++TGTF+  + +P G   I +KWVFS KT   G I+  KAR VARGF    G+D+  + +A PS  S+K  +A+A +    L H+DV Q ++ A L  +++++ P GCG  +G VVK+ +ALYG+KQ+
Sbjct:   16 PMTYKDVMCSKYKVFWETAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLILDFKARVVARGFSQIPGIDFHRSSSACPSAASLKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQS 170          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8204.16397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LAZ3_9PHAE1.140e-3541.83Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K236_9PHAE7.450e-3541.29Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JK49_9PHAE1.210e-3443.87Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JVQ8_9PHAE1.380e-3447.10Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KR39_9PHAE3.560e-3443.23Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K0Q0_9PHAE4.310e-3443.23Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K9E2_9PHAE4.540e-3443.23Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRY9_9PHAE4.670e-3443.23CCHC-type domain-containing protein n=4 Tax=Ectoca... [more]
A0A6H5JNP9_9PHAE4.730e-3442.58Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JUN0_9PHAE1.260e-3341.94Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8204contigS-dermatodea_contig8204:4434..4895 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size462
Cds size168
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8204.16397.1prot_S-dermatodea_contig8204.16397.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8204 4671..4838 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925328.1977396-UTR-S-dermatodea_contig8204:4433..46701622925328.1977396-UTR-S-dermatodea_contig8204:4433..4670Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8204 4434..4670 -
1694079858.5548508-UTR-S-dermatodea_contig8204:4433..46701694079858.5548508-UTR-S-dermatodea_contig8204:4433..4670Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8204 4434..4670 -
1622925328.222389-UTR-S-dermatodea_contig8204:4838..48951622925328.222389-UTR-S-dermatodea_contig8204:4838..4895Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8204 4839..4895 -
1694079858.5841339-UTR-S-dermatodea_contig8204:4838..48951694079858.5841339-UTR-S-dermatodea_contig8204:4838..4895Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8204 4839..4895 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925328.2114906-CDS-S-dermatodea_contig8204:4670..48381622925328.2114906-CDS-S-dermatodea_contig8204:4670..4838Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8204 4671..4838 -
1694079858.5667439-CDS-S-dermatodea_contig8204:4670..48381694079858.5667439-CDS-S-dermatodea_contig8204:4670..4838Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8204 4671..4838 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8204.16397.1

>prot_S-dermatodea_contig8204.16397.1 ID=prot_S-dermatodea_contig8204.16397.1|Name=mRNA_S-dermatodea_contig8204.16397.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=56bp
MRAESEGHEQTGTFSSQGVPAGVNVITAKWVFSSKTERDGFIIKAKARFV
ARGFG*
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mRNA from alignment at S-dermatodea_contig8204:4434..4895-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8204.16397.1 ID=mRNA_S-dermatodea_contig8204.16397.1|Name=mRNA_S-dermatodea_contig8204.16397.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=462bp|location=Sequence derived from alignment at S-dermatodea_contig8204:4434..4895- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCAAATAGTTGGCCAGACGTAAGCAAGTCTAAGAACGCAGAGGTTTGGCG TGGTGCGATGCGTGCTGAATCAGAGGGACACGAGCAGACCGGTACGTTTT CCAGTCAAGGCGTCCCAGCAGGCGTAAATGTCATCACGGCAAAGTGGGTA TTCTCTTCTAAGACTGAACGCGATGGTTTTATCATCAAGGCGAAAGCGAG GTTTGTTGCACGCGGGTTTGGGTAGAAGTGCGGCGTTGACTATTTTGAGA CATTCGCAGCGACCCCGTCAGTGTTATCCATCAAGGTGGCGCTGGCCATT GCCGTCCAAAACGACTGGCCACTTTATCACTTCGACGTGACACAAGGGTT TGTTAGAGCCCCCCTTGACACCGACGTTTTCATTAAGCTTCCGACGGGTT GCGGTAGAAGGACGGGCGACGTGGTGAAGCTAGGAAAGGCACTTTACGGG GTGAAACAGGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8204:4434..4895-

>mRNA_S-dermatodea_contig8204.16397.1 ID=mRNA_S-dermatodea_contig8204.16397.1|Name=mRNA_S-dermatodea_contig8204.16397.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at S-dermatodea_contig8204:4434..4895- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGTGCTGAATCAGAGGGACACGAGCAGACCGGTACGTTTTCCAGTCA
AGGCGTCCCAGCAGGCGTAAATGTCATCACGGCAAAGTGGGTATTCTCTT
CTAAGACTGAACGCGATGGTTTTATCATCAAGGCGAAAGCGAGGTTTGTT
GCACGCGGGTTTGGGTAGATGCGTGCTGAATCAGAGGGACACGAGCAGAC
CGGTACGTTTTCCAGTCAAGGCGTCCCAGCAGGCGTAAATGTCATCACGG
CAAAGTGGGTATTCTCTTCTAAGACTGAACGCGATGGTTTTATCATCAAG
GCGAAAGCGAGGTTTGTTGCACGCGGGTTTGGGTAG
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