mRNA_S-dermatodea_contig8204.16397.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig8204.16397.1 vs. uniprot
Match: A0A6H5LAZ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAZ3_9PHAE) HSP 1 Score: 130 bits (326), Expect = 1.140e-35 Identity = 64/153 (41.83%), Postives = 96/153 (62.75%), Query Frame = 1
Query: 7 SWPDVSKSKNAEVWRGAMRAESEGHEQTGTFSS-QGVPAGVNVITAKWVFSSKTERDGFIIKAKARFVARGFG*KCGVDYFETFAATPSVLSIKVALAIAVQNDWPLYHFDVTQGFVRAPLDTDVFIKLPTGCGRRTGDVVKLGKALYGVKQA 462
++ DV SK W AM+ E + H++TGTF+ + +P G I +KWVFS KT G I+ KAR VARGF G+D+ + +A+PS SIK +A+A + L H+DV Q ++ A L +++++ P GCG +G VVK+ +ALYG+KQ+
Sbjct: 2 TYKDVMCSKYKVFWEAAMKKEIDDHDKTGTFTKVKELPDGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSEIPGIDFHHSSSASPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKNEIYLRFPEGCGSMSGKVVKVERALYGLKQS 154
BLAST of mRNA_S-dermatodea_contig8204.16397.1 vs. uniprot
Match: A0A6H5K236_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K236_9PHAE) HSP 1 Score: 130 bits (326), Expect = 7.450e-35 Identity = 64/155 (41.29%), Postives = 97/155 (62.58%), Query Frame = 1
Query: 1 PNSWPDVSKSKNAEVWRGAMRAESEGHEQTGTFSS-QGVPAGVNVITAKWVFSSKTERDGFIIKAKARFVARGFG*KCGVDYFETFAATPSVLSIKVALAIAVQNDWPLYHFDVTQGFVRAPLDTDVFIKLPTGCGRRTGDVVKLGKALYGVKQA 462
P ++ DV SK W AM+ E +GH++TGTF+ + +P G I +KWVFS KT+ G I+ KAR VARGF G+D+ + +A PS SI +A+A + L H++V Q ++ A L +++++ P GCG +G VVK+ +ALYG+KQ+
Sbjct: 16 PMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTKEKGLIVDFKARMVARGFSRIPGIDFHHSSSACPSAASINTVIAVATEKGKMLAHWNVKQAYINAKLKEEIYLRFPEGCGSMSGKVVKVKRALYGLKQS 170
BLAST of mRNA_S-dermatodea_contig8204.16397.1 vs. uniprot
Match: A0A6H5JK49_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK49_9PHAE) HSP 1 Score: 136 bits (343), Expect = 1.210e-34 Identity = 68/155 (43.87%), Postives = 99/155 (63.87%), Query Frame = 1
Query: 1 PNSWPDVSKSKNAEVWRGAMRAESEGHEQTGTFSS-QGVPAGVNVITAKWVFSSKTERDGFIIKAKARFVARGFG*KCGVDYFETFAATPSVLSIKVALAIAVQNDWPLYHFDVTQGFVRAPLDTDVFIKLPTGCGRRTGDVVKLGKALYGVKQA 462
P ++ DV SK W AM+ E +GH++TGTF+ + +P G I +KWVFSSKT G I+ KAR VARGF G+D+ + +A PS SIK +A+A + L H+DV Q ++ A L +++++LP GCG +G VVK+ +ALYG+KQ+
Sbjct: 283 PMTYKDVVCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGREAIGSKWVFSSKTNGKGLIVDFKARMVARGFSQIPGIDFHHSSSAFPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRLPEGCGSMSGKVVKVERALYGLKQS 437
BLAST of mRNA_S-dermatodea_contig8204.16397.1 vs. uniprot
Match: A0A6H5JVQ8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVQ8_9PHAE) HSP 1 Score: 137 bits (344), Expect = 1.380e-34 Identity = 73/155 (47.10%), Postives = 96/155 (61.94%), Query Frame = 1
Query: 1 PNSWPDVSKSKNAEVWRGAMRAESEGHEQTGTFSS-QGVPAGVNVITAKWVFSSKTERDGFIIKAKARFVARGFG*KCGVDYFETFAATPSVLSIKVALAIAVQNDWPLYHFDVTQGFVRAPLDTDVFIKLPTGCGRRTGDVVKLGKALYGVKQA 462
P + V+KS E W AMR E +GH TGTFS G P G +++KW F+ KT +DG I+K KAR VARGF VDYF + + PS SIK+ LA+A + L H+DV Q F A LD DVF++LP GCG ++ V K +A+YG+KQ+
Sbjct: 528 PMTVAGVNKSVYREGWEQAMREEFDGHLGTGTFSFVDGTPEGRRPVSSKWRFTWKTNKDGKIVKFKARLVARGFSQTPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHTVAKAERAIYGLKQS 682
BLAST of mRNA_S-dermatodea_contig8204.16397.1 vs. uniprot
Match: A0A6H5KR39_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR39_9PHAE) HSP 1 Score: 135 bits (341), Expect = 3.560e-34 Identity = 67/155 (43.23%), Postives = 98/155 (63.23%), Query Frame = 1
Query: 1 PNSWPDVSKSKNAEVWRGAMRAESEGHEQTGTFSS-QGVPAGVNVITAKWVFSSKTERDGFIIKAKARFVARGFG*KCGVDYFETFAATPSVLSIKVALAIAVQNDWPLYHFDVTQGFVRAPLDTDVFIKLPTGCGRRTGDVVKLGKALYGVKQA 462
P ++ DV SK +W A+ E +GH++TGTFS G+P G I+AKW+FS KT G I+ KAR VARGF GVD+ + +A PS +SIK +A++ +N H+D+ Q + A L +++++LP GCG TG VK+ +ALYG+KQ+
Sbjct: 117 PLTYKDVLNSKYKVLWEAAIAKEFDGHKKTGTFSEISGLPEGRKAISAKWIFSHKTNEKGLIVDFKARMVARGFSQIPGVDFHHSSSACPSAVSIKTMVAVSTENGRRPVHWDIKQAYTHAKLKEEIYLRLPDGCGVWTGKAVKVERALYGLKQS 271
BLAST of mRNA_S-dermatodea_contig8204.16397.1 vs. uniprot
Match: A0A6H5K0Q0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Q0_9PHAE) HSP 1 Score: 135 bits (341), Expect = 4.310e-34 Identity = 67/155 (43.23%), Postives = 98/155 (63.23%), Query Frame = 1
Query: 1 PNSWPDVSKSKNAEVWRGAMRAESEGHEQTGTFSS-QGVPAGVNVITAKWVFSSKTERDGFIIKAKARFVARGFG*KCGVDYFETFAATPSVLSIKVALAIAVQNDWPLYHFDVTQGFVRAPLDTDVFIKLPTGCGRRTGDVVKLGKALYGVKQA 462
P ++ DV SK +W A+ E +GH++TGTFS G+P G I+AKW+FS KT G I+ KAR VARGF GVD+ + +A PS +SIK +A++ +N H+D+ Q + A L +++++LP GCG TG VK+ +ALYG+KQ+
Sbjct: 318 PLTYKDVLNSKYKVLWEAAIAKEFDGHKKTGTFSEISGLPEGRKAISAKWIFSHKTNEKGLIVDFKARMVARGFSQIPGVDFHHSSSACPSAVSIKTMVAVSTENGRRPVHWDIKQAYTHAKLKEEIYLRLPDGCGVWTGKAVKVERALYGLKQS 472
BLAST of mRNA_S-dermatodea_contig8204.16397.1 vs. uniprot
Match: A0A6H5K9E2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9E2_9PHAE) HSP 1 Score: 135 bits (341), Expect = 4.540e-34 Identity = 67/155 (43.23%), Postives = 98/155 (63.23%), Query Frame = 1
Query: 1 PNSWPDVSKSKNAEVWRGAMRAESEGHEQTGTFSS-QGVPAGVNVITAKWVFSSKTERDGFIIKAKARFVARGFG*KCGVDYFETFAATPSVLSIKVALAIAVQNDWPLYHFDVTQGFVRAPLDTDVFIKLPTGCGRRTGDVVKLGKALYGVKQA 462
P ++ DV SK +W A+ E +GH++TGTFS G+P G I+AKW+FS KT G I+ KAR VARGF GVD+ + +A PS +SIK +A++ +N H+D+ Q + A L +++++LP GCG TG VK+ +ALYG+KQ+
Sbjct: 550 PLTYKDVLNSKYKVLWEAAIAKEFDGHKKTGTFSEISGLPEGRKAISAKWIFSHKTNEKGLIVDFKARMVARGFSQIPGVDFHHSSSACPSAVSIKTMVAVSTENGRRPVHWDIKQAYTHAKLKEEIYLRLPDGCGVWTGKAVKVERALYGLKQS 704
BLAST of mRNA_S-dermatodea_contig8204.16397.1 vs. uniprot
Match: A0A6H5JRY9_9PHAE (CCHC-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY9_9PHAE) HSP 1 Score: 135 bits (341), Expect = 4.670e-34 Identity = 67/155 (43.23%), Postives = 98/155 (63.23%), Query Frame = 1
Query: 1 PNSWPDVSKSKNAEVWRGAMRAESEGHEQTGTFSS-QGVPAGVNVITAKWVFSSKTERDGFIIKAKARFVARGFG*KCGVDYFETFAATPSVLSIKVALAIAVQNDWPLYHFDVTQGFVRAPLDTDVFIKLPTGCGRRTGDVVKLGKALYGVKQA 462
P ++ DV SK +W A+ E +GH++TGTFS G+P G I+AKW+FS KT G I+ KAR VARGF GVD+ + +A PS +SIK +A++ +N H+D+ Q + A L +++++LP GCG TG VK+ +ALYG+KQ+
Sbjct: 1012 PLTYKDVLNSKYKVLWEAAIAKEFDGHKKTGTFSEISGLPEGRKAISAKWIFSHKTNEKGLIVDFKARMVARGFSQIPGVDFHHSSSACPSAVSIKTMVAVSTENGRRPVHWDIKQAYTHAKLKEEIYLRLPDGCGVWTGKAVKVERALYGLKQS 1166
BLAST of mRNA_S-dermatodea_contig8204.16397.1 vs. uniprot
Match: A0A6H5JNP9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP9_9PHAE) HSP 1 Score: 132 bits (332), Expect = 4.730e-34 Identity = 66/155 (42.58%), Postives = 96/155 (61.94%), Query Frame = 1
Query: 1 PNSWPDVSKSKNAEVWRGAMRAESEGHEQTGTFSS-QGVPAGVNVITAKWVFSSKTERDGFIIKAKARFVARGFG*KCGVDYFETFAATPSVLSIKVALAIAVQNDWPLYHFDVTQGFVRAPLDTDVFIKLPTGCGRRTGDVVKLGKALYGVKQA 462
P ++ DV SK W AM+ E +GH++TGTF+ + +P G I +KWVFS KT G I+ KAR VARGF G+D+ +F+A PS SIK +A+A + L H+DV Q + A L +++++ P GCG +G VVK+ +ALYG+K +
Sbjct: 108 PMTYKDVMCSKCKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIHGIDFHHSFSACPSAASIKTVIAVATEKGKNLAHWDVKQAYTHAKLKEEIYLRFPEGCGCMSGKVVKVERALYGLKHS 262
BLAST of mRNA_S-dermatodea_contig8204.16397.1 vs. uniprot
Match: A0A6H5JUN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN0_9PHAE) HSP 1 Score: 131 bits (330), Expect = 1.260e-33 Identity = 65/155 (41.94%), Postives = 97/155 (62.58%), Query Frame = 1
Query: 1 PNSWPDVSKSKNAEVWRGAMRAESEGHEQTGTFSS-QGVPAGVNVITAKWVFSSKTERDGFIIKAKARFVARGFG*KCGVDYFETFAATPSVLSIKVALAIAVQNDWPLYHFDVTQGFVRAPLDTDVFIKLPTGCGRRTGDVVKLGKALYGVKQA 462
P ++ DV SK W AM+ E +GH++TGTF+ + +P G I +KWVFS KT G I+ KAR VARGF G+D+ + +A PS S+K +A+A + L H+DV Q ++ A L +++++ P GCG +G VVK+ +ALYG+KQ+
Sbjct: 16 PMTYKDVMCSKYKVFWETAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLILDFKARVVARGFSQIPGIDFHRSSSACPSAASLKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQS 170 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8204.16397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig8204.16397.1 >prot_S-dermatodea_contig8204.16397.1 ID=prot_S-dermatodea_contig8204.16397.1|Name=mRNA_S-dermatodea_contig8204.16397.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=56bp MRAESEGHEQTGTFSSQGVPAGVNVITAKWVFSSKTERDGFIIKAKARFVback to top mRNA from alignment at S-dermatodea_contig8204:4434..4895- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig8204.16397.1 ID=mRNA_S-dermatodea_contig8204.16397.1|Name=mRNA_S-dermatodea_contig8204.16397.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=462bp|location=Sequence derived from alignment at S-dermatodea_contig8204:4434..4895- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig8204:4434..4895- >mRNA_S-dermatodea_contig8204.16397.1 ID=mRNA_S-dermatodea_contig8204.16397.1|Name=mRNA_S-dermatodea_contig8204.16397.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at S-dermatodea_contig8204:4434..4895- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |