mRNA_S-dermatodea_contig82.16394.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig82.16394.1
Unique NamemRNA_S-dermatodea_contig82.16394.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig82.16394.1 vs. uniprot
Match: D7FIJ0_ECTSI (Dynactin 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIJ0_ECTSI)

HSP 1 Score: 306 bits (784), Expect = 8.100e-97
Identity = 145/176 (82.39%), Postives = 158/176 (89.77%), Query Frame = 1 
Query:  112 EYVKTKAKDLVSLKAQVHGSHNLFLMGKSIIMPGAIICGELQAIRIGRYCVIGEETVIRPAYRVEPEGSHLKCRFTPLSVGNHTYIGKSCVIESAGIGCNVRIDDGCVLGRNSFVRDNCHLLEGTVLPEGAVVPPFTVLGGCPAKVVSVLHESTASMWTEDAINFYETFEPSETST 639
            EYVKT+  D+V  KA VHG HNLFLMG+SIIMPG II GELQ IRIGRYCV+GE TVIRPAYR+E E S+LKCRFTPLSVG+HTYIGKSCV+ESAGIGCNVRI+DGCVLGRNSFVRDNCHLL GTVLPEGAVVPPFTVL GCPA++VSVLHEST S+WTEDA+NFYETFEPS   T
Sbjct:    8 EYVKTRDGDIVFKKAHVHGLHNLFLMGRSIIMPGVIIRGELQEIRIGRYCVVGEGTVIRPAYRIEQEESNLKCRFTPLSVGSHTYIGKSCVVESAGIGCNVRIEDGCVLGRNSFVRDNCHLLPGTVLPEGAVVPPFTVLQGCPARMVSVLHESTPSVWTEDAVNFYETFEPSAVVT 183
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BLAST of mRNA_S-dermatodea_contig82.16394.1 vs. uniprot
Match: A0A7S1ZJQ9_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZJQ9_TRICV)

HSP 1 Score: 156 bits (395), Expect = 2.600e-40
Identity = 73/169 (43.20%), Postives = 112/169 (66.27%), Query Frame = 1 
Query:  115 YVKTKAKDLVSLKAQVHGSHNLFLMGKSIIMPGAIICGELQA-IRIGRYCVIGEETVIRPAYRVEPEGSHLKCRFTPLSVGNHTYIGKSCVIESAGIGCNVRIDDGCVLGRNSFVRDNCHLLEGTVLPEGAVVPPFTVLGGCPAKVVSVLHESTASMWTEDAINFYETF 618
            Y+KT A + VS  A +HGS ++ + GKS++ PGA++ G+L A +R+GRYC +G+ +V+RP     P+G+    R  P S+GNHT IG+ CV+E+A +G +V + DGCVLG+ S ++D C +  GTVL   AVVPPF+++ G P +VV  + ES A+   + ++  Y  F
Sbjct:   21 YIKTAANNYVSRSASIHGSRHVEIRGKSVVRPGAVVRGDLGAPVRVGRYCRVGDRSVLRPPSASLPDGTE---RRLPQSIGNHTSIGRDCVVEAAAVGFSVLVGDGCVLGKRSVIKDCCRIEPGTVLAPDAVVPPFSIVSGSPGRVVGEMPESAAAEIPDRSLGEYAAF 186
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BLAST of mRNA_S-dermatodea_contig82.16394.1 vs. uniprot
Match: A0A0L0DIQ2_THETB (Dynactin subunit 5 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DIQ2_THETB)

HSP 1 Score: 150 bits (378), Expect = 3.570e-38
Identity = 70/175 (40.00%), Postives = 116/175 (66.29%), Query Frame = 1 
Query:  112 EYVKTKAKDLVSLKAQVHGSHNLFLMGKSIIMPGAIICGELQAIRIGRYCVIGEETVIRPAYRVEPEGSHLKCRFTPLSVGNHTYIGKSCVIESAGIGCNVRIDDGCVLGRNSFVRDNCHLLEGTVLPEGAVVPPFTVLGGCPAKVVSVLHESTASMWTEDAINFYETFEPSETS 636
            E+++T + + VS  + + GS N+ L GKS+++PG+II G+L A+RIGRYCVI +  V+RPAY+  P+G +    +  LS+G+  Y+GK  V+E+A IG +V I +G ++ + + + D C +L G V+PE AV+PPF++ GG PA ++  L E+   +  E A   YE++ P++ +
Sbjct:   10 EWIETASGNKVSRASVLCGSQNIILNGKSLVLPGSIIRGDLAAVRIGRYCVISDRVVLRPAYKALPKGLN----YFQLSLGDCVYVGKDAVVEAASIGSHVIIGEGAIVSKRAVILDCCEILPGAVVPEDAVIPPFSIYGGNPAVLIGELTEAAQRVHEEKAFACYESYVPAKAA 180
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BLAST of mRNA_S-dermatodea_contig82.16394.1 vs. uniprot
Match: A0A7S2V2Q0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2Q0_9STRA)

HSP 1 Score: 144 bits (362), Expect = 5.000e-36
Identity = 70/170 (41.18%), Postives = 109/170 (64.12%), Query Frame = 1 
Query:  112 EYVKTKAKDLVSLKAQVHGSHNLFLMGKSIIMPGAIICGELQAIRIGRYCVIGEETVIRPAYRVEPEGSHLKCRFTPLSVGNHTYIGKSCVIESAGIGCNVRIDDGCVLGRNSFVRDNCHLLEGTVLPEGAVVPPFTVLGGCPAKVVSVLHESTASMWTEDAINFYETFE 621
            E+++T   +LVS K ++   + + + GK+I+M G II G+L  + +GRYC +G  T+IRPA ++  E +     F  + +G++T IG+ C+IE+A IG NV+     VLG+ S VRD C L +GTVL  GAVVPPF+V+ GCP +V S L E++   ++  A + Y+ F+
Sbjct:   11 EFIRTTTNNLVSKKVRISSPNFVKITGKTILMHGVIIRGDLAKVEMGRYCEVGANTIIRPALKISEEPT-----FADVKIGDNTRIGEDCIIEAAWIGTNVQXXXXXVLGKGSLVRDCCRLEDGTVLAPGAVVPPFSVVAGCPGRVTSELPENSPEEFSHAAQDSYKKFK 175
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BLAST of mRNA_S-dermatodea_contig82.16394.1 vs. uniprot
Match: A0A7S3QBQ9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QBQ9_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.740e-34
Identity = 78/215 (36.28%), Postives = 122/215 (56.74%), Query Frame = 1 
Query:   28 VKLEVMSSPSSLVPAPASAALATKAVDRE--YVKTKAKDLVSLKAQVHGSHNLFLMGKSIIMPGAIICGELQAIRIGRYCVIGEETVIRP-AYRVEPEGSHLKC-------------RFTPLSVGNHTYIGKSCVIESAGIGCNVRIDDGCVLGRNSFVRDNCHLLEGTVLPEGAVVPPFTVLGGCPAKVVS--VLHESTASMWTEDAINFYETF 618
            VK+  MSS ++   +   + L  +    E  YVKT A + VS KA +HG+ N+ + GKSI+ P   I G+ Q +RIGRYC IGE +++RP +Y+   + SH                +F PL VG+HT IGK CVIE+A +G +V I D CV+ +   ++D C++  GTV+ +  V+PPF+ + GCP  ++   ++ ES  +   +D +  +  F
Sbjct:   16 VKVTRMSSAANQETSEDPSRLVVEVAPEEEGYVKTAAYNYVSRKAFIHGAKNVEMKGKSIVHPKVHIRGDFQTVRIGRYCHIGEGSILRPPSYQASLDTSHEGASENGENEEEKQLIKFLPLIVGSHTQIGKGCVIEAAAVGSSVYIGDNCVISKRVIIKDCCYIASGTVIAQDTVIPPFSRVAGCPGGMIENGLMAESITTTSVDDCVEQFNEF 230
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BLAST of mRNA_S-dermatodea_contig82.16394.1 vs. uniprot
Match: A0A3S1H5M8_ELYCH (Uncharacterized protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S1H5M8_ELYCH)

HSP 1 Score: 139 bits (350), Expect = 2.540e-34
Identity = 65/171 (38.01%), Postives = 106/171 (61.99%), Query Frame = 1 
Query:  112 EYVKTKAKDLVSLKAQVHGSHNLFLMGKSIIMPGAIICGELQAIRIGRYCVIGEETVIRPAYRVEPEGSHLKCRFTPLSVGNHTYIGKSCVIESAGIGCNVRIDDGCVLGRNSFVRDNCHLLEGTVLPEGAVVPPFTVLGGCPAKVVSVLHESTASMWTEDAINFYETFEP 624
            +Y++T + + VS ++ + GS N+ + GK+I+M G +I G+L  +RIGR+C+I    VIRPA++   +G      F PL +G+H  I ++ V+ +A +G  V I   CV+GR + ++D C + + T+LP  AVVPPFT+  G P K+ S L + T  + T+  +N+Y  F P
Sbjct:   12 QYIETASGNKVSRQSVLCGSQNIVINGKTIVMTGCVIRGDLANVRIGRHCIISNNAVIRPAFKRFSKG----VAFFPLHIGDHVLIEENSVVNAAQVGSFVHIGKNCVIGRRAVLKDCCAIADNTILPPEAVVPPFTLCSGSPGKLTSELPDCTQDLMTDITVNYYHHFRP 178
[Close]
BLAST of mRNA_S-dermatodea_contig82.16394.1 vs. uniprot
Match: A0A0N4UAM7_DRAME (Uncharacterized protein n=1 Tax=Dracunculus medinensis TaxID=318479 RepID=A0A0N4UAM7_DRAME)

HSP 1 Score: 139 bits (349), Expect = 3.910e-34
Identity = 64/170 (37.65%), Postives = 107/170 (62.94%), Query Frame = 1 
Query:  109 REYVKTKAKDLVSLKAQVHGSHNLFLMGKSIIMPGAIICGELQAIRIGRYCVIGEETVIRPAYRVEPEGSHLKCRFTPLSVGNHTYIGKSCVIESAGIGCNVRIDDGCVLGRNSFVRDNCHLLEGTVLPEGAVVPPFTVLGGCPAKVVSVLHESTASMWTEDAINFYETF 618
            +E+V+T   + V+ K+++ GS N+ L GKSI+M   I+ G++ +IR G+YCV+GE TVIRP+Y+   +G      F P+ +G+H +I   C+I +A IG  V I  G ++GR+  ++D   +L    +P  AV+PPF+++ G P  ++  L EST ++ T+   +FY+ F
Sbjct:   11 QEFVETATGNKVNKKSRLFGSQNIVLNGKSILMKDCILRGDMNSIRAGKYCVVGERTVIRPSYKRFSKG----LTFFPVHIGDHVFIENDCIIMAAQIGAFVHIGSGAIVGRSVIIKDCVQVLPNAFVPHDAVIPPFSIVSGNPGTIIGELPESTQNLMTQATRSFYDNF 176
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BLAST of mRNA_S-dermatodea_contig82.16394.1 vs. uniprot
Match: A0A0K0JQM9_BRUMA (BMA-DNC-5 n=14 Tax=Spiruromorpha TaxID=2072716 RepID=A0A0K0JQM9_BRUMA)

HSP 1 Score: 135 bits (341), Expect = 4.280e-33
Identity = 65/177 (36.72%), Postives = 104/177 (58.76%), Query Frame = 1 
Query:  112 EYVKTKAKDLVSLKAQVHGSHNLFLMGKSIIMPGAIICGELQAIRIGRYCVIGEETVIRPAYRVEPEGSHLKCRFTPLSVGNHTYIGKSCVIESAGIGCNVRIDDGCVLGRNSFVRDNCHLLEGTVLPEGAVVPPFTVLGGCPAKVVSVLHESTASMWTEDAINFYETFEPSETSTA 642
            EYV+T   + V+ K+++ GS N+ L GKS +M   I+ G++  IR GRYCV+GE T+IRP+Y+   +G      F P+ +G+H +IG  C++ +A IG  V          +  ++    +L  TV+P  AV+PPF+++GG P  V+  L EST  + T+   NFY+ F P   +++
Sbjct:    8 EYVETATGNKVNRKSRLFGSQNIVLNGKSTLMKDCILRGDMHNIRTGRYCVVGERTIIRPSYKRFSKG----LTFFPVHIGDHVFIGNDCIVMAAEIGAFVHXXXXXXXXXSVIIKSCVQVLPNTVVPHDAVIPPFSIVGGNPGTVIGHLPESTQELMTQATRNFYDNFVPDSKNSS 180
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BLAST of mRNA_S-dermatodea_contig82.16394.1 vs. uniprot
Match: A0A0N4UWP5_ENTVE (Uncharacterized protein n=1 Tax=Enterobius vermicularis TaxID=51028 RepID=A0A0N4UWP5_ENTVE)

HSP 1 Score: 133 bits (335), Expect = 2.880e-32
Identity = 66/171 (38.60%), Postives = 107/171 (62.57%), Query Frame = 1 
Query:  118 VKTKAKDLVSLKA-QVHGSHNLFLMGKSIIMPGAIICGELQAIRIGRYCVIGEETVIRPAYRVEPEGSHLKCRFTPLSVGNHTYIGKSCVIESAGIGCNVRIDDGCVLGRNSFVRDNCHLLEGTVLPEGAVVPPFTVLGGCPAKVVSVLHESTASMWTEDAINFYETFEPS 627
            V+T   + VS +   + GS N+ L GKSIIM G I+ G+L ++RIG+YCVIGE ++IRP+++   +G      + P+ +G++ +I   CV+ +A IG  V I    ++GR++ ++D   +L   V+P+ AV+PPF+++GG PA +V  L  ST  +  +   +FYE F PS
Sbjct:   14 VETATGNKVSRRGTHLFGSTNIVLSGKSIIMDGCILRGDLNSVRIGKYCVIGERSIIRPSFKAFSKG----LTYFPVHIGDYVFIENDCVVMAAQIGSFVHIGSNAIIGRSTVLKDCVQILPDAVIPQDAVIPPFSIVGGNPAVIVGELPPSTQDLMMQANKSFYENFVPS 180
[Close]
BLAST of mRNA_S-dermatodea_contig82.16394.1 vs. uniprot
Match: L8GIW5_ACACA (Dynactin 4 isoform 2, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GIW5_ACACA)

HSP 1 Score: 133 bits (334), Expect = 6.970e-32
Identity = 69/171 (40.35%), Postives = 105/171 (61.40%), Query Frame = 1 
Query:  112 EYVKTKAKDLVSLKAQVHGSHNLFLMGKSIIMPGAIICGELQAIRIGRYCVIGEETVIRPAYRVEPEGSHLKCRFTPLSVGNHTYIGKSCVIESAGIGCNVRIDDGCVLGRNSFVRDNCHLLEGTVLPEGAVVPPFTVLGGCPAKVVSVLHESTASMWTEDAINFYETFEP 624
            E+++T   + V  K+ + GS N+ L GK+++MPGA+I G+L A+ +G+Y VIG   VIRPA++   +GS     F P+++G+  +I + C++ +  IG  V +  G VLGR+S ++D C + EG+VL  G VVPPFT+ GG PA     L E    M  E ++  Y TF P
Sbjct:   16 EFIETHTGNKVGRKSILCGSQNIRLHGKTVVMPGAMIRGDLGAVNVGKYSVIGRNVVIRPAHK-RYQGS---VAFFPVTIGDFVHIEEDCIVSATSIGSYVHVGRGAVLGRHSVLKDCCWVEEGSVLAPGTVVPPFTIFGGSPAVQKGQLPECFQEMQKEASLINYNTFLP 182
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig82.16394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIJ0_ECTSI8.100e-9782.39Dynactin 4 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A7S1ZJQ9_TRICV2.600e-4043.20Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A0L0DIQ2_THETB3.570e-3840.00Dynactin subunit 5 n=1 Tax=Thecamonas trahens ATCC... [more]
A0A7S2V2Q0_9STRA5.000e-3641.18Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3QBQ9_9STRA1.740e-3436.28Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A3S1H5M8_ELYCH2.540e-3438.01Uncharacterized protein n=1 Tax=Elysia chlorotica ... [more]
A0A0N4UAM7_DRAME3.910e-3437.65Uncharacterized protein n=1 Tax=Dracunculus medine... [more]
A0A0K0JQM9_BRUMA4.280e-3336.72BMA-DNC-5 n=14 Tax=Spiruromorpha TaxID=2072716 Rep... [more]
A0A0N4UWP5_ENTVE2.880e-3238.60Uncharacterized protein n=1 Tax=Enterobius vermicu... [more]
L8GIW5_ACACA6.970e-3240.35Dynactin 4 isoform 2, putative n=1 Tax=Acanthamoeb... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig82contigS-dermatodea_contig82:23150..28062 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score305.4
Seed ortholog evalue1.9e-80
Seed eggNOG ortholog2880.D7FIJ0
Preferred nameDCTN5
KEGG koko:K10427
KEGG Pathwayko04962,map04962
GOsGO:0000003,GO:0001568,GO:0001944,GO:0002376,GO:0002478,GO:0002495,GO:0002504,GO:0003205,GO:0003231,GO:0003279,GO:0003281,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005869,GO:0005875,GO:0005886,GO:0006810,GO:0006888,GO:0006928,GO:0007017,GO:0007018,GO:0007275,GO:0007276,GO:0007283,GO:0007507,GO:0008088,GO:0008090,GO:0008150,GO:0009987,GO:0010970,GO:0012505,GO:0015629,GO:0015630,GO:0016020,GO:0016192,GO:0019882,GO:0019884,GO:0019886,GO:0019953,GO:0022414,GO:0030705,GO:0031090,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0035904,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0046907,GO:0048002,GO:0048193,GO:0048232,GO:0048513,GO:0048609,GO:0048731,GO:0048856,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0060840,GO:0060976,GO:0070013,GO:0071944,GO:0072358,GO:0072359,GO:0098930,GO:0099111
EggNOG free text desc.aorta development
EggNOG OGsKOG3121@1,KOG3121@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTrimeric LpxA-like
Ec32 orthologEc-28_000450.1
Exons5
Model size2198
Cds size603
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925327.9300368-UTR-S-dermatodea_contig82:23149..231911622925327.9300368-UTR-S-dermatodea_contig82:23149..23191Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig82 23150..23191 +
1694079858.3383572-UTR-S-dermatodea_contig82:23149..231911694079858.3383572-UTR-S-dermatodea_contig82:23149..23191Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig82 23150..23191 +
1622925328.008183-UTR-S-dermatodea_contig82:26509..280621622925328.008183-UTR-S-dermatodea_contig82:26509..28062Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig82 26510..28062 +
1694079858.4088597-UTR-S-dermatodea_contig82:26509..280621694079858.4088597-UTR-S-dermatodea_contig82:26509..28062Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig82 26510..28062 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925327.9477012-CDS-S-dermatodea_contig82:23191..233441622925327.9477012-CDS-S-dermatodea_contig82:23191..23344Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82 23192..23344 +
1694079858.3491735-CDS-S-dermatodea_contig82:23191..233441694079858.3491735-CDS-S-dermatodea_contig82:23191..23344Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82 23192..23344 +
1622925327.9628162-CDS-S-dermatodea_contig82:24256..243601622925327.9628162-CDS-S-dermatodea_contig82:24256..24360Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82 24257..24360 +
1694079858.364834-CDS-S-dermatodea_contig82:24256..243601694079858.364834-CDS-S-dermatodea_contig82:24256..24360Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82 24257..24360 +
1622925327.9741657-CDS-S-dermatodea_contig82:24585..247241622925327.9741657-CDS-S-dermatodea_contig82:24585..24724Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82 24586..24724 +
1694079858.3766272-CDS-S-dermatodea_contig82:24585..247241694079858.3766272-CDS-S-dermatodea_contig82:24585..24724Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82 24586..24724 +
1622925327.9876034-CDS-S-dermatodea_contig82:25303..253901622925327.9876034-CDS-S-dermatodea_contig82:25303..25390Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82 25304..25390 +
1694079858.3907669-CDS-S-dermatodea_contig82:25303..253901694079858.3907669-CDS-S-dermatodea_contig82:25303..25390Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82 25304..25390 +
1622925327.99917-CDS-S-dermatodea_contig82:26389..265091622925327.99917-CDS-S-dermatodea_contig82:26389..26509Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82 26390..26509 +
1694079858.4001153-CDS-S-dermatodea_contig82:26389..265091694079858.4001153-CDS-S-dermatodea_contig82:26389..26509Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82 26390..26509 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig82.16394.1prot_S-dermatodea_contig82.16394.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig82 23192..26509 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig82.16394.1

>prot_S-dermatodea_contig82.16394.1 ID=prot_S-dermatodea_contig82.16394.1|Name=mRNA_S-dermatodea_contig82.16394.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=201bp
MSSPSSLVPAPASAALATKAVDREYVKTKAKDLVSLKAQVHGSHNLFLMG
KSIIMPGAIICGELQAIRIGRYCVIGEETVIRPAYRVEPEGSHLKCRFTP
LSVGNHTYIGKSCVIESAGIGCNVRIDDGCVLGRNSFVRDNCHLLEGTVL
PEGAVVPPFTVLGGCPAKVVSVLHESTASMWTEDAINFYETFEPSETSTA
*
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mRNA from alignment at S-dermatodea_contig82:23150..28062+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig82.16394.1 ID=mRNA_S-dermatodea_contig82.16394.1|Name=mRNA_S-dermatodea_contig82.16394.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4913bp|location=Sequence derived from alignment at S-dermatodea_contig82:23150..28062+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGGGCCGTTGGTAGAGTCTAGACGGGGTCAAGCTGGAAGTAATGTCATC
GCCAAGTTCGCTGGTACCAGCACCAGCATCGGCGGCGCTTGCGACGAAGG
CTGTCGACCGGGAATACGTGAAAACCAAAGCGAAAGACTTGGTCAGTCTC
AAAGCTCAGGTTCACGGGTCTCACAATCTGTTCCTCATGGGGAAGGTGAG
AGCTAGAACAAGCATCAGAGATCGCCGCCCATCATTGGCCGTCGTCGTCA
GAGGCACCTCTTGCACCGTGGGCACGCTTCGCTGCGTTGCAGTGGCGTTG
ATGATGGATTCCAAGGGTGCGGAAGTGACATAAGGGAGTACAGCAGTACA
GTCATCAGTAGCCTGTGCTGCGCCCTTGAGTATATGTTATAGGTTCAAGA
GTGGCGCCATTCGGTAAAGCTATGAAAGCTTCGTATCCAGGTATCTTTTT
TCAACCCAACACGAGCAGCGATGGATATAACTGCTGTTGGTTTCTTCAGG
CACCTCTTTAGCATTTGCAACAAGACCACACGCTGCACGTCGTTATTCCG
CTGCTATGCGCACACTCGTATCCGATGCTCGTCGCAAAAGCAACCCCATC
GACGCCTCGTGTCGGCGCTGTCGCGGCGTGCATCTGTGCAGCGATCTCCA
AGCTGCTGCTCTTGTTGTTGAACTCTTCAGATATGCTTGCCATGCCCTAC
ACCACGCAGTAAGACAGTAAGGTCGTATACGACGTGGGCCCAGCAGGTAG
TGTAGAATAGTTTTCCCATCTCCAGTCTATCATGATGGTGTACATACTCT
GTGCAAGGCTCGAATCAAGGACGTGATTTTCCACAGCTAGCCAGGTTACG
CTGTCCGTTGGCTCTCGTTGTCGATGTTGGTTGCTCTGGTTCATTTTGTG
AGGTCGGTTTCGAGAGGCCTCTAAACGACACGTTGGCGAACGGCGCCGCC
TACAGTACAGAGTACATAGTAGCCACGGCTTTAAGTGCAACCCCTCTGCA
GACTGCAGCACCTGCAGCTCGAGGTGAATCCCAACAGCCAAGCCCTTACT
GTATTACCCCATGGTTAGGTAGTCTGTTCTCTCCGCGCATTTCCGTCGTT
GTTGCAGAGCATCATCATGCCGGGAGCGATAATCTGCGGAGAGCTGCAGG
CTATCCGAATAGGCCGGTACTGCGTCATTGGAGAGGAAACCGTTATTCGA
CCAGCTTACAGGTATGACCGAAATCTGCGGTGGGGGTTGCTGCATGCGGG
TTGCGGTTCTTGTTGAGTGGTGGCGTTTCGCAGCGGGGCGTACACGAAAA
TGCTAGAAGTTGTGATGGATTTTTCACGCGGCGGGCTCGAATTTCTTGGG
TGTTCCTGCTGTAGGCGGCTGGCTAAGCGGACGCTAATCGGATTTGCTGC
AACTCGCTTGTTCCATCCCGCGCACGGCGTTGACAGGGTTGAACCGGAAG
GCTCCCACCTCAAGTGCCGCTTCACCCCGCTGTCAGTGGGCAATCATACA
TATATCGGGAAATCTTGCGTCATCGAGTCAGCCGGAATCGGGTGCAACGT
CCGCATCGATGACGGATGCGTGTTGGTGAGCTGCTGGACCCCTAGGTCGC
TTTCTATCGTGTCTTCCCTTGAGACAAGCGAGAGGCTATCGAGGAGCACG
CTCGCCAAAGCGGGTACGCCTCTGCGCACGGGCAACTTCGCACGCGAGAG
CTGCGATGCTGCCGGTGGATCCATGGCTCCTGGCCTGTCCTGCTCATGTA
TAGACAGCGTGGATACTGCAGCACTCCTCGCTCTTGAGATGCTCAAACAG
CAACCCGCTAAATTTACGTTGGCGGCGGCGACTGATTTTGTGGAATGCGC
CCGAGTACAATTATATAGACCGTTGATCGCGCTGGTAGATACCAGCATCG
GTGGCGCGGGAAGGGTGTGTGTGAGGATGTACTGTGCAGCATTCGACCGA
CGTCATATGGGGGAGGTCTTCCCTTATCGCATATGCCTGTTTCATCTATC
TGTGTTGGCGGAACGTGCAATACACACCCTATCTTCAGCAAAGACTTGCC
CGTTTGGTTGTTGGTTCTACGGCTGCTTAACACCAAGATGGCTGCCCGAC
ACCGTTTCATTGGCGCGCGTGTCGCACGTGTGCATTATTTGACGATTGTG
ACAGGGACGGAATAGTTTCGTCCGGGACAACTGCCACCTGCTGGAAGGGA
CCGTTCTTCCGGAAGGCGCGGTGGTTCCCCCTTTCACCGTGGTGAGATAG
ATACCACGGGCGTTGAGCTTGACGTCCGACTGGCGTCCGTTGATATCTGA
ATGCTTACTTTTGGAACTGAGTGTCGTTTTTCGGGTCTATCTATCATTTA
TCACCCGCCTGCACCGTATATCACATGGGACAGGTACAGTGCTGTACCCG
AACGGTGGCTTACTTTTCGCCGTACATAGGTGGTGGCCGGAAAGTTATAG
ATAACCCTGGCGCGAGTAGCTCGCATGCACGCGGTATGCATGTGCGTGCA
CACTCACCGCAAATATTAACCGCATTGATGATATTCCGCGCTAAACGGAT
TCAGTGGCAGAAGAGTTAGGAGCCAATGTAGCCCAGACATTTGAGACTGT
AGCAGTCGAGCGCGGGGATGCAGGTAAGTCACGCGACCTCACGGCGTTGA
ACCCTCAGAGAAATTTAACCCTGGCCTGGGGTTGCCGTCATTGACGTTTC
CTCGGTTGTTTTGTGTTCGGTACGTAGATGGCGTGGGAAGGGGTCGACTG
GTACGTAACTGGGAACTTTTTTTGCCACTAGGGATCGCCGCGATCTCCCA
CGTCCACGCCCTTGGCCGGGGCTACCGTGCGCACAGTGTCGAAGATGGAT
GAATAGTCGTGTGTGAGCGTGTGAGCAGGAAGATGACTACAAGGGGATAT
AATAGTTGATTATCGTGCTTGGTCAACGCTGTCACCAATATGGCTCCGAA
CAAGGTCCTCATTTGCATGTCGCGGGTTGCCCTTGGCGCTCATTGGAAGA
GATTTTGTGTCGGGAGAGTAAGCCCGCAAAGAAAAGAAGAAGATCATAGG
GCTACAAATGAAGGCTGTCGATCATGTCAGCAACGCCAAGTGTCGTTATC
TTGTCAAACCGAACCTGCACAAAGAGTACTTGCAGATATGCGGGGAACCC
AACTGCGGACCCAAAACCCATAATCCCACTTTTACGACGAGTGTCTGATA
TTCTTCATCCCTCGACTCGGCTGTGTGTGGCTTCCTGCAGCTGGGCGGCT
GCCCCGCGAAGGTAGTGTCCGTTTTGCATGAGAGCACCGCGTCCATGTGG
ACAGAGGATGCGATCAATTTCTACGAAACCTTCGAACCGAGCGAGACTTC
GACAGCGTGATGCTGGGCGGCCGTTGGGATCACCCTCGAGTGTGAGGGTT
GGCTTGCAGACCTGCTGAAGACGAACGGCTTCACTGCAGCAACAAGCAGC
GCCAACCGGTGTGAAGCTGTACCTGCAACAGCACTCCTACGGCGAAGTCG
ACGCTGCGCTCGCGGGCTATTGATGCATCTTCCAACGTCTCGTAGCTTTT
AGGTGGCCTACGCTGCCACCTCTTGAGTGCCGCGATCGTGTTGAAGTGGT
ACCCTCCATTTTGGTTGTAGAACGTGTCGTTCAGAGGTATAGGTCGAAAG
TAACGCCCAGGGATCGAGCACGCTTGCGCCGCTTGTTGTTGCGCACAGGC
AAGGCTAGCGCGGCGCGTATGTATAGGTGTCAGCACGTTCTGCACAACCT
CCAAACTTGTCTGCTCCCGATCATCACCAGCACGAGATTGCTGTATGTAT
TTTCGCCAAACGGTTACTGTTACAAGTGTATCTAAGCTACGGTTGGTCAG
TGTACTTCCGCCGCCGCTGCTCGGTGTAATTTGTACACGTGCTGGTCCGT
AGCCTAGATTATTTCGGTTCCCGGGTGTGGTGCCGTGGTCGCGTTGCTAT
TGCTGCAGGCTCTCCAAGCATTGTAGCTCCGAGTTGATGGGGCCTTGCTT
GTCTTGCGGCCGCAAGTGAGCCCAATACTTGCTTCAGACGAAATTCTTGT
TTTCCCAAATAGTTGAAGGCTTCAAGTTATCAGCATAGGTACCGTACCGC
AAGCGAAGGCGGCACACAGAATGAGGAGGCGGCGGTTTTGAGTGGGGTGA
TTTGGATGTAAACAAGAGGGCGATATGAATGACTTGCCTGAACGAGATAT
CGTCGAACGTTCGGCTCTCGCTTCGCTGCGTCGGATTTTGCGGTTTGATT
GTCATGACAGTGGCGGTAGTGTTTCTCGTCGTTCCAGCGAGGCGCAAAGC
AGCGTGAAGCGTTCAGAAAACATGCCGTAAAGTCGTCGTATCATCCGCCC
TGCAGTTCTACAAGGCCATACCATAAGGAGACGGGATGACAACGGAAACC
ACAAACGGAGTTGAAGCAGGGCGGCGGGAAGTAAAGATGACGTGATGAGG
TGGACCGTTGTGTTTCGCGCTCTGCTGACGACGCTTTCTGGTATGGAAAC
CAGGTTTGCGTGGTGTTTCGATCGATGAAATGGAACCACTCTAACTCGTG
CATGTATTCATTTGTTCGGTTGGCTGTCCCGCTGCAGCGGCGCTGATGCG
CATCTGGAATGTCGTCGGCGTCTTAGTAGTCTTGTAGGGCAAGCGAGCGT
CGCCTGCGGCAAAGTAGATATTGAGCACCACACGACCCTGCAGACGATCC
GTGTCCGTGATTTGCAAGACTTGCCGGTGTGTTCAAGTCCCGTTTTTCTG
CCTGCGGGGTGGAAGGCGGTATTCCACACTATTAATAGTAGGAGTCGACG
ACGATGCACAGTGCAAACGGTGGGGGCGTTTACCGCGGTGACCCGTCTTC
AGGACACCCACTATAACATATTGCGGAAGGCACACGGCTGAAATCTGCAT
TCGAGCGCTGGTC
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Coding sequence (CDS) from alignment at S-dermatodea_contig82:23150..28062+

>mRNA_S-dermatodea_contig82.16394.1 ID=mRNA_S-dermatodea_contig82.16394.1|Name=mRNA_S-dermatodea_contig82.16394.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1206bp|location=Sequence derived from alignment at S-dermatodea_contig82:23150..28062+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCATCGCCAAGTTCGCTGGTACCAGCACCAGCATCGGCGGCGCTTGC
GACGAAGGCTGTCGACCGGGAATACGTGAAAACCAAAGCGAAAGACTTGG
TCAGTCTCAAAGCTCAGGTTCACGGGTCTCACAATCTGTTCCTCATGGGG
AAGATGTCATCGCCAAGTTCGCTGGTACCAGCACCAGCATCGGCGGCGCT
TGCGACGAAGGCTGTCGACCGGGAATACGTGAAAACCAAAGCGAAAGACT
TGGTCAGTCTCAAAGCTCAGGTTCACGGGTCTCACAATCTGTTCCTCATG
GGGAAGAGCATCATCATGCCGGGAGCGATAATCTGCGGAGAGCTGCAGGC
TATCCGAATAGGCCGGTACTGCGTCATTGGAGAGGAAACCGTTATTCGAC
CAGCTTACAGAGCATCATCATGCCGGGAGCGATAATCTGCGGAGAGCTGC
AGGCTATCCGAATAGGCCGGTACTGCGTCATTGGAGAGGAAACCGTTATT
CGACCAGCTTACAGGGTTGAACCGGAAGGCTCCCACCTCAAGTGCCGCTT
CACCCCGCTGTCAGTGGGCAATCATACATATATCGGGAAATCTTGCGTCA
TCGAGTCAGCCGGAATCGGGTGCAACGTCCGCATCGATGACGGATGCGTG
TTGGGTTGAACCGGAAGGCTCCCACCTCAAGTGCCGCTTCACCCCGCTGT
CAGTGGGCAATCATACATATATCGGGAAATCTTGCGTCATCGAGTCAGCC
GGAATCGGGTGCAACGTCCGCATCGATGACGGATGCGTGTTGGGACGGAA
TAGTTTCGTCCGGGACAACTGCCACCTGCTGGAAGGGACCGTTCTTCCGG
AAGGCGCGGTGGTTCCCCCTTTCACCGTGGGACGGAATAGTTTCGTCCGG
GACAACTGCCACCTGCTGGAAGGGACCGTTCTTCCGGAAGGCGCGGTGGT
TCCCCCTTTCACCGTGCTGGGCGGCTGCCCCGCGAAGGTAGTGTCCGTTT
TGCATGAGAGCACCGCGTCCATGTGGACAGAGGATGCGATCAATTTCTAC
GAAACCTTCGAACCGAGCGAGACTTCGACAGCGTGACTGGGCGGCTGCCC
CGCGAAGGTAGTGTCCGTTTTGCATGAGAGCACCGCGTCCATGTGGACAG
AGGATGCGATCAATTTCTACGAAACCTTCGAACCGAGCGAGACTTCGACA
GCGTGA
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