mRNA_S-dermatodea_contig81881.16383.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig81881.16383.1
Unique NamemRNA_S-dermatodea_contig81881.16383.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig81881.16383.1 vs. uniprot
Match: D8LCA6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCA6_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 3.210e-15
Identity = 36/43 (83.72%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    1 SDRVRRSYWNSAGEIREMVYRNMIEFEGEEYNWEKVAEVKPQY 129
            SDRVRRSYWNSAGEIREMVYRNMIEF+ EEYNWE VAE +  Y
Sbjct:  496 SDRVRRSYWNSAGEIREMVYRNMIEFDAEEYNWENVAEEEDMY 538
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BLAST of mRNA_S-dermatodea_contig81881.16383.1 vs. uniprot
Match: A0A836CL05_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL05_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 4.080e-9
Identity = 28/43 (65.12%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 SDRVRRSYWNSAGEIREMVYRNMIEFEGEEYNWEKVAEVKPQY 129
            S+RVR SYW SA EIREMVYRNM+EF+ E Y W  VAE +  Y
Sbjct:  336 SNRVRASYWASAAEIREMVYRNMLEFDAEGYEWRNVAEEEDMY 378
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig81881.16383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCA6_ECTSI3.210e-1583.72Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CL05_9STRA4.080e-965.12Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig81881contigS-dermatodea_contig81881:111..239 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.4
Seed ortholog evalue1.8e-12
Seed eggNOG ortholog2880.D8LCA6
EggNOG OGs2EADK@1,2SGMP@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_005470.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size129
Cds size129
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925327.17844-CDS-S-dermatodea_contig81881:110..2391622925327.17844-CDS-S-dermatodea_contig81881:110..239Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig81881 111..239 -
1694079857.8577325-CDS-S-dermatodea_contig81881:110..2391694079857.8577325-CDS-S-dermatodea_contig81881:110..239Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig81881 111..239 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig81881.16383.1prot_S-dermatodea_contig81881.16383.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig81881 111..239 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig81881.16383.1

>prot_S-dermatodea_contig81881.16383.1 ID=prot_S-dermatodea_contig81881.16383.1|Name=mRNA_S-dermatodea_contig81881.16383.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=43bp
SDRVRRSYWNSAGEIREMVYRNMIEFEGEEYNWEKVAEVKPQY
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mRNA from alignment at S-dermatodea_contig81881:111..239-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig81881.16383.1 ID=mRNA_S-dermatodea_contig81881.16383.1|Name=mRNA_S-dermatodea_contig81881.16383.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=129bp|location=Sequence derived from alignment at S-dermatodea_contig81881:111..239- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCGATCGCGTGCGGCGGAGCTACTGGAACAGCGCCGGGGAGATTCGAGA
GATGGTTTACCGCAACATGATCGAGTTCGAGGGGGAGGAGTACAACTGGG
AGAAGGTTGCAGAGGTGAAGCCTCAATAT
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Coding sequence (CDS) from alignment at S-dermatodea_contig81881:111..239-

>mRNA_S-dermatodea_contig81881.16383.1 ID=mRNA_S-dermatodea_contig81881.16383.1|Name=mRNA_S-dermatodea_contig81881.16383.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=258bp|location=Sequence derived from alignment at S-dermatodea_contig81881:111..239- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCGATCGCGTGCGGCGGAGCTACTGGAACAGCGCCGGGGAGATTCGAGA
GATGGTTTACCGCAACATGATCGAGTTCGAGGGGGAGGAGTACAACTGGG
AGAAGGTTGCAGAGGTGAAGCCTCAATATAGCGATCGCGTGCGGCGGAGC
TACTGGAACAGCGCCGGGGAGATTCGAGAGATGGTTTACCGCAACATGAT
CGAGTTCGAGGGGGAGGAGTACAACTGGGAGAAGGTTGCAGAGGTGAAGC
CTCAATAT
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