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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Fungi |
| Seed ortholog score | 67.8 |
| Seed ortholog evalue | 6.5e-09 |
| Seed eggNOG ortholog | 203908.EGG01794 |
| EggNOG OGs | 2CY2J@1,2S1HF@2759,2YG7C@29000,3AIB2@33154,3PB7J@4751,3V4R7@5204 |
| Best tax level | Pucciniomycotina |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | signal anchor |
| Exons | 5 |
| Model size | 1176 |
| Cds size | 588 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig818.16379.1 >prot_S-dermatodea_contig818.16379.1 ID=prot_S-dermatodea_contig818.16379.1|Name=mRNA_S-dermatodea_contig818.16379.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=196bp
MDSTREGARVRHLRYLMQRTYSYGALLGTLSCGVIVGRQVLWMSEGQEEF
GRGLNRMFPAERRRPGLVFWDKACERFRFVRVHPQPGWEGTTYMVDGWHF
QGHKQLFCRVHTNPNLTTNPLPWEAGPSGAMRFMWNTSIAESTKSWAHAL
GSFLSSMRPCWIQFVFDQLRTVHNDLLVSKWRVQTHRTKPNIVIF* back to topmRNA from alignment at S-dermatodea_contig818:3771..7326+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig818.16379.1 ID=mRNA_S-dermatodea_contig818.16379.1|Name=mRNA_S-dermatodea_contig818.16379.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3556bp|location=Sequence derived from alignment at S-dermatodea_contig818:3771..7326+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACGTGTTGTATGGATAGTACTCGCGAGGTGAGTGGCTTTCTTAGGGTGCT
TATAGTTGATCGGTCACTTAGATATATATATAGCGCTTCGCGATCCATCC
TCGACCGATAAGTGTTAGTGACTGTAATCTATGAAAACTATTAACCCAAG
GGAGTGCGACGGCGATATTCTTTAGGGGTTTTTTGTGACGCCGCAGCTGC
TGTAACCTTGTCTTGAGAAAAAGACCGTAGGCTCATGTTCGTAAGTAGGA
CGTAATGATAGCGATCGTGTTATGTAGTATGATGAAACGTGAAGTATTTT
GGGACCCATTTTCAAGAACAAAAAGGGTAAAAACTCGCCCTGTTGTAGTA
GCTCGCCCCCCACATTCTGTTAGTACGCTCTCGTGTACGCAAGAGAGCTT
TTAAGTGCTTGGCGTAGTCAACTACCGTGAGTTCTGCCCACTCGTTAAAA
ACCCGTTTCGAACAGGGCGCACGTGTGCGGCACCTCAGGTACTTGATGCA
GCGTACGTACAGCTACGGAGCTCTACTGGGGACGCTCTCGTGCGGTGTTA
TCGTCGGGCGACAGGTGCTTTGGATGAGCGAAGGGCAGGAAGAGTTCGGG
CGGGGCCTCAACCGCATGTTCCCCGCCGAAAGGAGGAGGCCGGGCCTTGT
ATTCTGGGATAAGGCCTGCGAAAGGTTTCGATTCGTTCGAGTTCACCCTC
AACCGGGCTGGGAGGGGACGACGTACATGGTGGACGGTTGGCACTTTCAA
GGTTGAAACGTGTTAAAAGTTGAAGTACGTTTTGTGTAATGTATAATTTT
CGTTACCCTTAAACGCTAAAATAACGAATGTGCAGGTTAGGACGGAATGC
GCGTTGACGAAGGCGTAATGTAGTTCACAATGTAAATAACAACTCTAACC
CTATCTCATATGATTTCGTGGGCGCATGTTTATCATATTGGCGCAAGGGT
TATGCTAATATCAGGCAAAATACATACAGATGAATGCGTACGGTAGGTTT
GTAGTACTGTCGACGGTGTACCCTGCTACGACAGGGAAGGGTTGAGATAA
CGCAAACAAATCTGGACTCCATACCGCGTCTCTCCCACTCATGCCTGCGT
ATCACGTTTTCGCGACACAACACCTTTACCCGCGCACGTCCCGCCCCGCC
CCCTTGAGGCCACAAGCAGCTTTTTTGCCGTGTCCACACTAATCCGAACT
TAACGACGAACCCACTGCCGTGGGAAGCAGGACCATCGGGGGCTATGCGG
TTCATGTGGAACACGTGAGCTATTACGGGACAGTAAAAGGGGAAAGCTGT
ACAGTTTTGAATTTGTGTGTAGACGACTGGACGAAGTTTATATCTGTGGA
TCGGCGCAAGTGTCGAGGGGAATTTTTAGGAATGTGTCCATTGGTACTGA
ACGCGGAGCACTCACAATCGAGGCATTGTTTTCGGACGCCATTAATTTTG
TGACTCCGTACCCCTCGTCCCTCCTCCCCTCACGTGAGCCGATTCTAGTC
CGAGTGTATCACACATCTTCCGTCGCGTATTTGTTGTGCGTTCGGCGCTT
TTGCGATCGCACGTATTACGGAGGTATACAGAGTAATCAGGACCAAATAT
CACGACCACGACTACCCAAGTCTTCCGGCCATGAAAACCCAAGCACCAAA
ACAACAATATAATGAAGAAAAATGCGGACGAGGGCTGGCGTTATACAACA
AGATCGGCCATGAAATCTCGATATTTCCAGCCTAGTTGGACTTGTTAACT
GTGATTCTCCGTAATAGGTTGAATAATCCCCTGTGCGGTACTTGTTGGTA
CTGAAGCCTCCTGAATGTGAAAAATTCGGTTGTCTTTTATGTACCATGAA
CCCGTGCCATATGATTTGTTGTCGCAAACGCAAATGATTATGACGAGGAG
GTGTAATTTTCCAAACAAAACGCAGTCTGGCCCGCGAAAACCCTGCAGAT
TGATCCGTGACGGCGTTGTTGGTACGCGTGGTCTATTTCGGTTTGGAGGC
GACATGCGTTTTACATAAGCCCCGCCCCGACCACCCCGCCCCCCCCCACC
CACCACACAAAACCACCANNNNNNNNNNGGTGTTCATACCGGCTGTCTTT
TTCTTTTTTGGGTGAACAACGTATTTTACAAAACCCCCCCCCCCCCCCCC
CTCCCCCAACCACACACCAACCACAAACCCACCCCCCCTGCATTTTTCCC
CCAGCTCCATAGCCGAAAGCACAAAAAGCTGGGCGCATGCTCTCGGGAGC
TTCCTTTCTTCCATGCGGCCGTGCTGGATCCAGTTCGTCTTCGACCAGTT
GCGTACGGTACACAACGACCTGCTTGTTTCCAAATGGCGGGTGCAAACGC
ACCGTACGAAGCCTAACATCGTCATATTTTGACAATTTACAATGGCGCTG
TACGGTGCCGGTCTACAAGCATGGACTCGCCGAGGTGAATGCATACGATT
AACTGTGTAATGACGTTGTGCCAATGGGGGGGGGGTGTCGGGTGTGGATG
GGCGTAGTATATATTGAAAGTAGGGTACACGTATAGATTGTTTATTCCGT
GTTATTTTAGACTCTTAGTGGCTGGATATACCGAGGACTTCTTAGGTACC
TTCTTCGTATTAATCTTGCTTATACCTGCCTATCTCACGAGTCTCCACAT
TGTCGGATGTCAACTTTAATATCATGTGTACATAGATATATACTTCGAAG
TAACTGTCAACCTCATGTACTTGAACACGTAGCAGGCCTCTGTACGGGGT
TCTGGACTCGTCTATTTTAAATGTGTTGGACGAAGCAAGATACAAGAAAG
GACCGCCGTATAATCTAGTAGTATGCGCTGTCAATATAAAAGCTTTTGGC
ATTGTTGTGTTTTTGGAAGGCAGCACAAGAAGGGTGCATGTGTATGGTTT
AAATACGTCGTATAATGCGTTTGTTGGCGACGCGCGCGCTGGCATACACG
CTATGCGAAGTCTAGACACAACCTTGCGAAACAATATGTTGGGCCCACGA
CTTCTTCCTCTCTAACGTCGCGCGTGCAGGACTCTGCCTCACTCTAGCGC
GGACTACGTCAGGGCCCGTCAACGGTTGAGCAGGGCATATTTGTCGTATC
AACGGGCCGGTTTGTTGTATCTGTCGGTACGATAGTTTGACCGTATTGGT
TGTGCGTGTGCGAGTAATTCACCGTCAATTTATAGAGATTCTCTTATATT
GTTGACGCAGACAATCATGGCGAGTACGGTATTTGTCTGTCGTTCCTACA
TTCGTGTCGTTCATAGTTCGCATGCCCTCAATCTGGGCCCACTACATGCT
TGGATCCGTGCTCAAAATAGTAGGTTGAACTACAAAGTATAACATGTGGG
GGCACTTCATGAATACTTTGCTCTACAGTTTGAGATTATGATGGTGAACA
GTTGTTAGATCTCTTCCTTCACGTATCCATTTCCAGTGCCGACTTTGATC
TTGCCGGCGTGGACGTTTGAGGATTAAAACTCTTTCGAGTGGTAGTATTG
TGTGTGTGGTGTCAATAGTTTGGTGTGGCTTACGATTGGTATGCACAAAA
TATGTC back to topCoding sequence (CDS) from alignment at S-dermatodea_contig818:3771..7326+ >mRNA_S-dermatodea_contig818.16379.1 ID=mRNA_S-dermatodea_contig818.16379.1|Name=mRNA_S-dermatodea_contig818.16379.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1176bp|location=Sequence derived from alignment at S-dermatodea_contig818:3771..7326+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGATAGTACTCGCGAGATGGATAGTACTCGCGAGGGCGCACGTGTGCG
GCACCTCAGGTACTTGATGCAGCGTACGTACAGCTACGGAGCTCTACTGG
GGACGCTCTCGTGCGGTGTTATCGTCGGGCGACAGGTGCTTTGGATGAGC
GAAGGGCAGGAAGAGTTCGGGCGGGGCCTCAACCGCATGTTCCCCGCCGA
AAGGAGGAGGCCGGGCCTTGTATTCTGGGATAAGGCCTGCGAAAGGTTTC
GATTCGTTCGAGTTCACCCTCAACCGGGCTGGGAGGGGACGACGTACATG
GTGGACGGTTGGCACTTTCAAGGGCGCACGTGTGCGGCACCTCAGGTACT
TGATGCAGCGTACGTACAGCTACGGAGCTCTACTGGGGACGCTCTCGTGC
GGTGTTATCGTCGGGCGACAGGTGCTTTGGATGAGCGAAGGGCAGGAAGA
GTTCGGGCGGGGCCTCAACCGCATGTTCCCCGCCGAAAGGAGGAGGCCGG
GCCTTGTATTCTGGGATAAGGCCTGCGAAAGGTTTCGATTCGTTCGAGTT
CACCCTCAACCGGGCTGGGAGGGGACGACGTACATGGTGGACGGTTGGCA
CTTTCAAGGCCACAAGCAGCTTTTTTGCCGTGTCCACACTAATCCGAACT
TAACGACGAACCCACTGCCGTGGGAAGCAGGACCATCGGGGGCTATGCGG
TTCATGTGGAACACGCCACAAGCAGCTTTTTTGCCGTGTCCACACTAATC
CGAACTTAACGACGAACCCACTGCCGTGGGAAGCAGGACCATCGGGGGCT
ATGCGGTTCATGTGGAACACCTCCATAGCCGAAAGCACAAAAAGCTGGGC
GCATGCTCTCGGGAGCTTCCTTTCTTCCATGCGGCCGTGCTGGATCCAGT
TCGTCTTCGACCAGTTGCGTACGGTACACAACGACCTGCTTGTTTCCAAA
TGGCGGGTGCAAACGCACCGTACGAAGCCTAACATCGTCATATTTTGACT
CCATAGCCGAAAGCACAAAAAGCTGGGCGCATGCTCTCGGGAGCTTCCTT
TCTTCCATGCGGCCGTGCTGGATCCAGTTCGTCTTCGACCAGTTGCGTAC
GGTACACAACGACCTGCTTGTTTCCAAATGGCGGGTGCAAACGCACCGTA
CGAAGCCTAACATCGTCATATTTTGA back to top
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