mRNA_S-dermatodea_contig81683.16365.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig81683.16365.1 vs. uniprot
Match: A0A8F0FD12_9PHAE (NADH dehydrogenase subunit 2 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0FD12_9PHAE) HSP 1 Score: 305 bits (781), Expect = 2.530e-98 Identity = 158/229 (69.00%), Postives = 185/229 (80.79%), Query Frame = 1
Query: 1 KLGAAPYHLWVADVYEGAPTLVSLIFASVPKLAILIVICRIALVSSMSFFSFLWRPLFFFFAILSLIVGCLGGLNEIKIKRLFAFSGISHVGFLCLSLSCSSIESLQAMFFYLIIYILTTVFMLNYVLCLNPAQKKWLSLVDTVGIAQSNPIFALLICFMTFSLAGIPPFGGFFSKVFVFIALIDHLSFYAVFVAIITSVLSAFYYLRIIKIIFFEKSQTWIYFNYLSK 687
K+GAAPYH WVADVYEG P+LVSLIFA+VPKL I IV+ R+A VSS SFF LW+ LF F +LS GC GGL EIKIKR+FAFSGI H+GF+C+S SC S+E Q+MFFYL+IY++T VFM +VLCLN ++KKWLSLV+ VGI QSNPIF L+IC M FSLAGIPPFGGFF+KVFVFIALI SF+ V AI+TSV+SAFYYLRIIKI+FFE S W +FN L K
Sbjct: 270 KIGAAPYHFWVADVYEGVPSLVSLIFAAVPKLVIFIVLSRLAFVSSWSFFFILWKTLFVFCGLLSFFFGCFGGLGEIKIKRIFAFSGIGHIGFICVSFSCGSLEGAQSMFFYLLIYMVTAVFMWTFVLCLNSSKKKWLSLVNCVGIVQSNPIFGLIICLMCFSLAGIPPFGGFFAKVFVFIALIAKSSFHIVIFAILTSVISAFYYLRIIKILFFEGSHLWFFFNPLYK 498
BLAST of mRNA_S-dermatodea_contig81683.16365.1 vs. uniprot
Match: A0A4Y5T7S4_9PHAE (NADH dehydrogenase subunit 2 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A4Y5T7S4_9PHAE) HSP 1 Score: 269 bits (688), Expect = 7.910e-85 Identity = 133/230 (57.83%), Postives = 175/230 (76.09%), Query Frame = 1
Query: 1 KLGAAPYHLWVADVYEGAPTLVSLIFASVPKLAILIVICRIALVSSMSFFSFLWRPLFFFFAILSLIVGCLGGLNEIKIKRLFAFSGISHVGFLCLSLSCSSIESLQAMFFYLIIYILTTVFMLNYVLCLNPAQKKWLSLVDTVGIAQSNPIFALLICFMTFSLAGIPPFGGFFSKVFVFIALIDHLSFYAVFVAIITSVLSAFYYLRIIKIIFFEKSQTWIYFNYLSKN 690
KLGAAPYH+WVADVYEGAPT+++L+FASVPK AI + + R+ +SS S F +W LFF +LSL GCLGGL EIK+KR+ A+SGI H+GFLCL C S+ +Q++FFYL Y LT+++M Y+L L P++K WLS+VD+VG+ QSNPI ++ C M FSLAGIPPFGGFFSK+ VF +L+D + A+ TS LSAFYYLR+IKI++FEK +TW++F LSK+
Sbjct: 231 KLGAAPYHMWVADVYEGAPTIITLLFASVPKFAIFVAMLRLIFISSWSLFPVVWESLFFSCGLLSLFFGCLGGLGEIKLKRVLAYSGIGHIGFLCLGTGCGSLMGVQSIFFYLFFYTLTSLYMWTYLLHLYPSKKNWLSIVDSVGLVQSNPILGIMTCLMLFSLAGIPPFGGFFSKMLVFASLVDGYFYSLALFAVFTSALSAFYYLRLIKILYFEKPKTWVFFCALSKS 460
BLAST of mRNA_S-dermatodea_contig81683.16365.1 vs. uniprot
Match: Q2TUB1_DICDH (NADH dehydrogenase subunit 2 n=1 Tax=Dictyota dichotoma TaxID=2876 RepID=Q2TUB1_DICDH) HSP 1 Score: 269 bits (688), Expect = 7.910e-85 Identity = 135/230 (58.70%), Postives = 173/230 (75.22%), Query Frame = 1
Query: 1 KLGAAPYHLWVADVYEGAPTLVSLIFASVPKLAILIVICRIALVSSMSFFSFLWRPLFFFFAILSLIVGCLGGLNEIKIKRLFAFSGISHVGFLCLSLSCSSIESLQAMFFYLIIYILTTVFMLNYVLCLNPAQKKWLSLVDTVGIAQSNPIFALLICFMTFSLAGIPPFGGFFSKVFVFIALIDHLSFYAVFVAIITSVLSAFYYLRIIKIIFFEKSQTWIYFNYLSKN 690
KLG+APYH+WV DVYEGAPT+VSL+FA+VPKLAI IV+ R+ + S S FS +W FF +LSL GCLGGL EIK KR+ +S + H+GFLCL + C S+E QA+FFYL IY T++++ Y++ L P K WLSLVD+VGI QSNP LL C M FSLAGIPPFGGFF+K+ VF+AL+D + VA+ITS ++AFYYLRIIKI++FEKS TW +F+ +SK+
Sbjct: 231 KLGSAPYHMWVIDVYEGAPTIVSLLFAAVPKLAIFIVLLRLVFLGSWSLFSSVWENFFFICGLLSLFFGCLGGLGEIKFKRVLGYSAVGHIGFLCLGVGCGSVEGSQAVFFYLFIYTFTSIYVWAYLMHLGPISKNWLSLVDSVGIVQSNPTLGLLTCLMFFSLAGIPPFGGFFAKMVVFVALVDGYFYIVCVVAVITSSIAAFYYLRIIKILYFEKSNTWAFFDTISKS 460
BLAST of mRNA_S-dermatodea_contig81683.16365.1 vs. uniprot
Match: Q2TUE9_9PHAE (NADH dehydrogenase subunit 2 n=2 Tax=Desmarestia TaxID=31339 RepID=Q2TUE9_9PHAE) HSP 1 Score: 238 bits (606), Expect = 1.520e-72 Identity = 130/233 (55.79%), Postives = 169/233 (72.53%), Query Frame = 1
Query: 1 KLGAAPYHLWVADVYEGAPTLVSLIFASVPKLAILIVICRIALVSSMSFFSFLWRPLFFFFAILSLIVGCLGGLNEIKIKRLFAFSGISHVGFLCLSLSCSSIESLQAMFFYLIIYILTTVFMLNYVLCLN---PAQKKWLSLVDTVGIAQSNPIFALLICFMTFSLAGIPPFGGFFSKVFVFIALIDHLSFYAVFV-AIITSVLSAFYYLRIIKIIFFEKSQTWIYFNYLSK 687
KLGAAPYH+W+ADVYEG+PTLVS IFA VPK +I +VI R+ S SFF LW F +LSL +GCL GL E KIKRL AFS + HVGFLCL L+ SIE LQA+ FYL+IY+LT F+ YVL L+ + K ++ D +G+A+SNP+ L++ M FSLAGIPP GGFF+K+ +FI+L+D SFY + V ++TSV+SAFYY+R+IKI +FEK++ W +F LSK
Sbjct: 229 KLGAAPYHMWIADVYEGSPTLVSFIFAVVPKFSIFVVISRLIFTSFWSFFPSLWEDFFCICGLLSLSIGCLCGLGETKIKRLLAFSSVGHVGFLCLGLASGSIEGLQAVLFYLLIYMLTAAFLWIYVLHLDIDSTSNKSLVTFADAIGLARSNPLLGLVVVLMIFSLAGIPPLGGFFAKLNIFISLVDA-SFYLIAVFTVLTSVISAFYYIRLIKIFYFEKNENWFFFAPLSK 460
BLAST of mRNA_S-dermatodea_contig81683.16365.1 vs. uniprot
Match: Q2TUJ1_FUCVE (NADH dehydrogenase subunit 2 n=3 Tax=Fucus TaxID=3011 RepID=Q2TUJ1_FUCVE) HSP 1 Score: 235 bits (600), Expect = 1.200e-71 Identity = 126/233 (54.08%), Postives = 168/233 (72.10%), Query Frame = 1
Query: 1 KLGAAPYHLWVADVYEGAPTLVSLIFASVPKLAILIVICRIALVSSMSFFSFLWRPLFFFFAILSLIVGCLGGLNEIKIKRLFAFSGISHVGFLCLSLSCSSIESLQAMFFYLIIYILTTVFMLNYVLCLN---PAQKKWLSLVDTVGIAQSNPIFALLICFMTFSLAGIPPFGGFFSKVFVFIALIDHLSFYAVFV-AIITSVLSAFYYLRIIKIIFFEKSQTWIYFNYLSK 687
KLGAAPYH+W+ADVYEG+PT+VSLIFA VPK+A+ IVI R++ +S SFF W F +LSL +GCL GL E KIKRL AFS + HVGFLC+ L+ SIE +Q + FYL +Y+LT F+ YVL L +L+ D++G+ +SNP+F L + M FSLAG+PP GGFF+K+ +FI+L+D SFY V + A++TSV+SAFYY+R+IKI +FEK+ W YF +SK
Sbjct: 229 KLGAAPYHMWIADVYEGSPTIVSLIFAVVPKIAVFIVILRLSFLSFWSFFPVFWEDFFCLCGLLSLFIGCLCGLGETKIKRLLAFSSVGHVGFLCIGLASGSIEGVQGVLFYLFMYMLTAAFLWIYVLHLELGLTTTTSFLTFADSIGLVRSNPVFGLGVVLMIFSLAGVPPLGGFFAKLNIFISLVDA-SFYLVAIFAVLTSVISAFYYIRLIKIFYFEKNDNWFYFAPISK 460
BLAST of mRNA_S-dermatodea_contig81683.16365.1 vs. uniprot
Match: A0A3G5FPS0_9PHAE (NADH dehydrogenase subunit 2 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A3G5FPS0_9PHAE) HSP 1 Score: 234 bits (597), Expect = 3.200e-71 Identity = 131/232 (56.47%), Postives = 165/232 (71.12%), Query Frame = 1
Query: 1 KLGAAPYHLWVADVYEGAPTLVSLIFASVPKLAILIVICRIALVSSMSFFSFLWRPLFFFFAILSLIVGCLGGLNEIKIKRLFAFSGISHVGFLCLSLSCSSIESLQAMFFYLIIYILTTVFMLNYVLCLN-PAQKKWLSLVDTVGIAQSNPIFALLICFMTFSLAGIPPFGGFFSKVFVFIALIDHLSFY--AVFVAIITSVLSAFYYLRIIKIIFFEKSQTWIYFNYLSK 687
KLGAAPYH+W+ADVYEGAPT VSLIFA VPK+A +V+ R+A S S F W F +LSL +GC+ GL E KIKRL AFS I HVGFLCL L+ S+E LQA+ FYL+IY+LT F+ YVL L+ + L+ D +G+ +SNP + M FSLAGIPPFGGFF+K+ +FI L+D SFY AVF A+ITSV+SAFYY+R+IKI +FEK+Q W +F L+K
Sbjct: 229 KLGAAPYHMWIADVYEGAPTFVSLIFAVVPKVAFFVVVLRLAFTSFWSLFPMFWEDFFCLCGLLSLFIGCICGLGETKIKRLLAFSSIGHVGFLCLGLASGSLEGLQAVLFYLVIYMLTASFLWVYVLHLDLTSTSSLLTFADAIGLVRSNPFLGFGVVLMIFSLAGIPPFGGFFAKLNIFIGLVDS-SFYILAVF-AVITSVISAFYYIRLIKIFYFEKNQNWFFFAPLTK 458
BLAST of mRNA_S-dermatodea_contig81683.16365.1 vs. uniprot
Match: E6ZES5_ECTSI (NADH dehydrogenase subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZES5_ECTSI) HSP 1 Score: 234 bits (597), Expect = 3.200e-71 Identity = 126/230 (54.78%), Postives = 160/230 (69.57%), Query Frame = 1
Query: 1 KLGAAPYHLWVADVYEGAPTLVSLIFASVPKLAILIVICRIALVSSMSFFSFLWRPLFFFFAILSLIVGCLGGLNEIKIKRLFAFSGISHVGFLCLSLSCSSIESLQAMFFYLIIYILTTVFMLNYVLCLN-PAQKKWLSLVDTVGIAQSNPIFALLICFMTFSLAGIPPFGGFFSKVFVFIALIDHLSFYAVFVAIITSVLSAFYYLRIIKIIFFEKSQTWIYFNYLSK 687
KLGAAPYH+W+ADVYEGAPTLVSLIFA VPK+A +V+ RIA S S F LW F +LSL +GCL GL E KIKR+ AFS + HVGFLCL L+ SIE +QA+ FYL+ Y+LT F+ YVL L+ + L+ D +G+ +SNP + M FSLAGIPPFGGFF+K+ +FI LID F A++TSV+SAFYY+R+IKI +FEK+ W +F L+K
Sbjct: 229 KLGAAPYHMWIADVYEGAPTLVSLIFALVPKVAFFVVVLRIAFTSFWSLFPTLWEDFFCICGLLSLFIGCLCGLGETKIKRILAFSSVGHVGFLCLGLASGSIEGIQAVLFYLVFYMLTASFLWVYVLHLDLTSNSSLLTFADAIGLIRSNPFLGFGVVLMIFSLAGIPPFGGFFAKLNIFIGLIDSSFFIVAVFAVLTSVISAFYYIRLIKIFYFEKNNNWFFFAPLTK 458
BLAST of mRNA_S-dermatodea_contig81683.16365.1 vs. uniprot
Match: A0A8F0FCX9_9PHAE (NADH dehydrogenase subunit 2 n=3 Tax=Laminariales TaxID=2886 RepID=A0A8F0FCX9_9PHAE) HSP 1 Score: 234 bits (597), Expect = 3.360e-71 Identity = 127/232 (54.74%), Postives = 161/232 (69.40%), Query Frame = 1
Query: 1 KLGAAPYHLWVADVYEGAPTLVSLIFASVPKLAILIVICRIALVSSMSFFSFLWRPLFFFFAILSLIVGCLGGLNEIKIKRLFAFSGISHVGFLCLSLSCSSIESLQAMFFYLIIYILTTVFMLNYVLCLNPAQKK---WLSLVDTVGIAQSNPIFALLICFMTFSLAGIPPFGGFFSKVFVFIALIDHLSFYAVFVAIITSVLSAFYYLRIIKIIFFEKSQTWIYFNYLSK 687
K+GAAPYH+W+ADVYEGAP LVS +FA VPK A +VI RI S SFF LW F +LSL++GCL GL E KIKRL AFS I HVGFLCL L+ SIE +QA+ FYL+IY+LT F+ YV+ L+ A L+ D +G+A+SNP+ AL + M FSLAGIPPFGGFF+K+ +F+ L+D + + TSV+SAFYYLR+IKI +FEK+ W +F LSK
Sbjct: 229 KIGAAPYHMWIADVYEGAPALVSFLFAVVPKFAFFVVILRIVFTSFWSFFPTLWEDFFCICGLLSLLIGCLCGLGETKIKRLLAFSSIGHVGFLCLGLASGSIEGVQAVLFYLLIYMLTAAFLWVYVVHLDLASTPSGTLLTFADGIGLARSNPLLALGVVLMIFSLAGIPPFGGFFAKLNIFVGLVDSSFYILALFTVFTSVISAFYYLRLIKIFYFEKNNNWFFFPSLSK 460
BLAST of mRNA_S-dermatodea_contig81683.16365.1 vs. uniprot
Match: A0A8F0K0T6_9PHAE (NADH dehydrogenase subunit 2 n=1 Tax=Analipus japonicus TaxID=31333 RepID=A0A8F0K0T6_9PHAE) HSP 1 Score: 231 bits (589), Expect = 5.360e-70 Identity = 124/234 (52.99%), Postives = 164/234 (70.09%), Query Frame = 1
Query: 1 KLGAAPYHLWVADVYEGAPTLVSLIFASVPKLAILIVICRIALVSSMSFFSFLWRPLFFFFAILSLIVGCLGGLNEIKIKRLFAFSGISHVGFLCLSLSCSSIESLQAMFFYLIIYILTTVFMLNYVLCLN----PAQKKWLSLVDTVGIAQSNPIFALLICFMTFSLAGIPPFGGFFSKVFVFIALIDHLSFYAVFV-AIITSVLSAFYYLRIIKIIFFEKSQTWIYFNYLSK 687
KLGAAPYH+W+ADVYEGAPT+VS IFA VPK A+ +VI R++ S SFF W F +LSL +GC GL E KIKRL AFS + HVGFLCL LSC ++E +Q + FYL+IY+LT+ F+ YV+ LN + S D +G+ +SNP+ + + FSLAGIPP GGFF+K+ +F+ L+D SFY V V A++TSV+SAFYY+R+IKI +FEK++ W +F LSK
Sbjct: 229 KLGAAPYHMWIADVYEGAPTIVSFIFAVVPKFAVFVVILRLSFTSFWSFFPIFWEDFFCVCGLLSLFIGCFCGLGETKIKRLLAFSSVGHVGFLCLGLSCGNLEGVQGVLFYLLIYMLTSSFLWGYVVYLNLDATRHNSSFTSFTDAIGLVKSNPLLGFGVVLILFSLAGIPPLGGFFAKLNIFVGLVDA-SFYIVGVFAVLTSVISAFYYIRLIKIFYFEKNKDWFFFAPLSK 461
BLAST of mRNA_S-dermatodea_contig81683.16365.1 vs. uniprot
Match: Q94Z01_PYLLI (NADH dehydrogenase subunit 2 n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=Q94Z01_PYLLI) HSP 1 Score: 229 bits (585), Expect = 1.970e-69 Identity = 123/230 (53.48%), Postives = 162/230 (70.43%), Query Frame = 1
Query: 1 KLGAAPYHLWVADVYEGAPTLVSLIFASVPKLAILIVICRIALVSSMSFFSFLWRPLFFFFAILSLIVGCLGGLNEIKIKRLFAFSGISHVGFLCLSLSCSSIESLQAMFFYLIIYILTTVFMLNYVLCLN-PAQKKWLSLVDTVGIAQSNPIFALLICFMTFSLAGIPPFGGFFSKVFVFIALIDHLSFYAVFVAIITSVLSAFYYLRIIKIIFFEKSQTWIYFNYLSK 687
KLGAAPYH+W+ADVYEGAPT VSLIFA VPK A+ +V+ R++ +S SFF W F F + SL +GCL L E KIKRL AFS + HVGFLCL + S+E +QA YLIIY+LT F+ YVL L+ ++ LS D VG+ +SNP L + M FSLAGIPPFGGFF+K+ +FI+L+D + A++TSV+SAFYY+R+IKI +FEK++ W +F+ L+K
Sbjct: 229 KLGAAPYHMWIADVYEGAPTQVSLIFAVVPKAALFVVVLRLSYMSFWSFFPSFWESFFCFCGLFSLFIGCLCSLGETKIKRLLAFSSVGHVGFLCLGVVSGSLEGVQATLLYLIIYMLTAAFLWVYVLHLDLSSESSLLSFSDAVGLVRSNPFLGLGVALMIFSLAGIPPFGGFFAKLNIFISLVDSSLYLVSIFAVLTSVISAFYYMRLIKIFYFEKNKKWFFFSPLTK 458 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig81683.16365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig81683.16365.1 >prot_S-dermatodea_contig81683.16365.1 ID=prot_S-dermatodea_contig81683.16365.1|Name=mRNA_S-dermatodea_contig81683.16365.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=231bp KLGAAPYHLWVADVYEGAPTLVSLIFASVPKLAILIVICRIALVSSMSFFback to top mRNA from alignment at S-dermatodea_contig81683:2..694+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig81683.16365.1 ID=mRNA_S-dermatodea_contig81683.16365.1|Name=mRNA_S-dermatodea_contig81683.16365.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=693bp|location=Sequence derived from alignment at S-dermatodea_contig81683:2..694+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig81683:2..694+ >mRNA_S-dermatodea_contig81683.16365.1 ID=mRNA_S-dermatodea_contig81683.16365.1|Name=mRNA_S-dermatodea_contig81683.16365.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1386bp|location=Sequence derived from alignment at S-dermatodea_contig81683:2..694+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |