mRNA_S-dermatodea_contig8168.16364.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8168.16364.1
Unique NamemRNA_S-dermatodea_contig8168.16364.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8168.16364.1 vs. uniprot
Match: A0A6H5KBA3_9PHAE (CAP-Gly domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBA3_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 5.250e-37
Identity = 69/83 (83.13%), Postives = 77/83 (92.77%), Query Frame = 2 
Query:    2 NVLLQLVANGNSVIVAQVDSCMRHVITHSRFPRQLKEVEYLVRNSRSKDLRESVGSYVLLMLNSWPAASMEKEAAHLEALISV 250
            NVLLQL+ANGNSVIV QVDSCMRH+I HSRFPRQLKEVEY VRNSRSKDLRESVG+YVLLML +WP ASM+KEA HLE++I+V
Sbjct:  112 NVLLQLLANGNSVIVGQVDSCMRHIIEHSRFPRQLKEVEYTVRNSRSKDLRESVGAYVLLMLRAWPPASMDKEAGHLESIIAV 194
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BLAST of mRNA_S-dermatodea_contig8168.16364.1 vs. uniprot
Match: D8LJI4_ECTSI (CAP-Gly domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJI4_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 9.070e-36
Identity = 67/83 (80.72%), Postives = 77/83 (92.77%), Query Frame = 2 
Query:    2 NVLLQLVANGNSVIVAQVDSCMRHVITHSRFPRQLKEVEYLVRNSRSKDLRESVGSYVLLMLNSWPAASMEKEAAHLEALISV 250
            NVLLQL+ANGNSVIV QVDSCMRH+I HSRFPRQLKEVEY VRNSRSKDLRESVG+YVLLML +WP ASM+KEA +LE++I++
Sbjct:  112 NVLLQLLANGNSVIVGQVDSCMRHIIEHSRFPRQLKEVEYTVRNSRSKDLRESVGAYVLLMLRAWPPASMDKEAGYLESIIAL 194
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BLAST of mRNA_S-dermatodea_contig8168.16364.1 vs. uniprot
Match: A0A7E5W8E6_TRINI (CLIP-associating protein isoform X1 n=7 Tax=Noctuidae TaxID=7100 RepID=A0A7E5W8E6_TRINI)

HSP 1 Score: 49.3 bits (116), Expect = 8.850e-5
Identity = 22/79 (27.85%), Postives = 46/79 (58.23%), Query Frame = 2 
Query:    8 LLQLVANGNSVIVAQVDSCMRHVITHSRFPRQLKEVEYLVRNSRSKDLRESVGSYVLLMLNSWPAASMEKEAAHLEALI 244
            L+ L+ N   V+ +    C+R+++++   PR L  +   +  ++SK++R ++   ++LML  WPA ++EK+ A +   I
Sbjct:  442 LINLIQNAAKVVSSAGTVCVRYIVSYVHSPRLLPVIVTNLTTNKSKEIRSTLSEVLVLMLEKWPAQTIEKQQASVRDAI 520
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8168.16364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KBA3_9PHAE5.250e-3783.13CAP-Gly domain-containing protein n=1 Tax=Ectocarp... [more]
D8LJI4_ECTSI9.070e-3680.72CAP-Gly domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7E5W8E6_TRINI8.850e-527.85CLIP-associating protein isoform X1 n=7 Tax=Noctui... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8168contigS-dermatodea_contig8168:5161..7710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size265
Cds size264
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925325.869483-CDS-S-dermatodea_contig8168:5160..51971622925325.869483-CDS-S-dermatodea_contig8168:5160..5197Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8168 5161..5197 +
1694079856.9541054-CDS-S-dermatodea_contig8168:5160..51971694079856.9541054-CDS-S-dermatodea_contig8168:5160..5197Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8168 5161..5197 +
1622925325.8837564-CDS-S-dermatodea_contig8168:7483..77101622925325.8837564-CDS-S-dermatodea_contig8168:7483..7710Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8168 7484..7710 +
1694079856.9641626-CDS-S-dermatodea_contig8168:7483..77101694079856.9641626-CDS-S-dermatodea_contig8168:7483..7710Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8168 7484..7710 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8168.16364.1prot_S-dermatodea_contig8168.16364.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8168 5161..7710 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8168.16364.1

>prot_S-dermatodea_contig8168.16364.1 ID=prot_S-dermatodea_contig8168.16364.1|Name=mRNA_S-dermatodea_contig8168.16364.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=88bp
QRAAPACRQRQLGHRGPGGLVHAARHHALSLPSTAEGGGVLGEKQPLEGP
PRVGRVLRLADAQLVARGVHGKGSGASRGADFGEQGG*
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mRNA from alignment at S-dermatodea_contig8168:5161..7710+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8168.16364.1 ID=mRNA_S-dermatodea_contig8168.16364.1|Name=mRNA_S-dermatodea_contig8168.16364.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2550bp|location=Sequence derived from alignment at S-dermatodea_contig8168:5161..7710+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAACGTGCTGCTCCAGCTTGTCGCCAACGGCAACTCGGTGAGAGAGAGAA
TCTGCGCGTCCGAGCTTTTGTTTTTTCTTCACTTTTTTCTGCGCCCCGTT
TCTCTCCCCCGATTGGCCATCGGCGATCGATCGATCCTGTTGGAACACTG
CTCTGTCTCCTCGAGGACGCGTGGTCAAAGGTCTTAACTAACAGTTATGG
CGTGCAAAACATGCGTACCCTAAAAAAAACAAAGATTTCAGAAACATAGA
GCGAGCGCTGGGGTCCCGCCTCACCTTTTCAAGAGGGAAGATGGTCCAAG
CTACACCTATGGAGGCTAGGCTCACTTGTTACTTATGGTGCTATGCTATG
GTGTCCGTCGTATCTTGTATGATGTTATATGGTTACGGTATCATACAGGA
CAGGAGCCCCCCCTTTGGGTTACTCGTATAGGAGTTTAGTGTACAAATCG
GCCTCAAAAATCGTGTCGGAAATAGTATGGAAAAAACGTATTAATTAGTG
AAGATAATTTTTTTGATACTATTAATACTACGAGTACTATTAGTACTATT
AATAGATGTATTCAGGACCAAAAATTATGCTGAAGAGCGTATTCAATTGC
CATATTAATGCTTGTTTTTTTATCCGTTGCCCGAACAACACCGATTCAGT
TCACATTTTTTAGGGTTAGGGTTATCGTGTCCCGAAAAGGCAAGAGTTGA
AGTCGTTTTTTTTTTTTTTTTTTGAGCCACCATTGGCAAAGGAGGAAGGA
GCGATTGGCCATCGGCGATCGATCGATCCTTCGGGAACAATGCTCCGTGC
TCCCGAGGACAGGCGCGTGGTCAAATGGCCTAACAGCTAAGGCATGCAAC
ACTTGTGTAACCCCCCCGCCCCCCACGCCAAAAAAAATGAAGAGTTTGCG
CTGTTTGTTTGTTCATGTGTGGGGTGTTAAAACAATGTAGTGTTGCCGTC
TGCCATTTACGTATCGCAACCACCTACTAATACTAATAGAAGAGATAGAT
GGGTTGATATATAGATATTAGTAGATCCCTTGTGACCATAGGCGGGGTTC
GGAAAAAGTCAATCTGTCATACGATATGTGTTCAAAAAAATATTGGAAAA
AAAAAGTAAGTAATTACAACGGCCCACCCCGCATCAACTGAATCCAAACG
AACGATCGACCAATCAGAATCACCCAAGTGACGTCACCCATGTCCAAAAG
TCCCTCCGCCCCGAACGACCGTGGATGACGTCAGCCGTCATCCAAGGATT
TTCGGCCAAAGCGGTTTCTCGACCCTTTTTTTACCAATCGGAAATCTGCG
TGCCGCAAATCCCTTTCTCTATGTATTATAGGCAAGGTGGCTGTTTTTCA
ATTGTTTTTTTTTTTTGCTATTATGGGGACCGTAGTTAACAGGTCCAAAT
TTGCCGCAAGTCTCAACCTAGAAAAATCAAACTAGGCCGTAATTTTCGAG
ATTTCAAGTTCGATGTTTCATGAATATGGCCATAATCTCGTGGTTTTTTT
TTCATGAGATTTTTGTTGTTTGGGTATTCATGGTCGAAATAGTACTACAG
TAATAGGGTATTGTTGGCAATGAGATTTGGACCTGCTAACTATGTTACTA
TTAATAGTAGACCCCATGTTCCGAGGTATGTTCCTTCTGATTACGAGCGT
TTTTCTTGTATTATTTATTTATCACGTACTACAACTTACAGAGCCTAAAT
ATAGGTAATTCCTAGAGTTGTGAGTCCGCTGGCGTAGCCTGCTTAAACTT
ATCGGCTGGCGAAGGCAGTCGACTATCCGACTCTTGCCGATAGGTCGGGC
GAGCGCAGCGAGCAGGCGCCGCCAGCTGTATGCTGCCGCGTGAAAAACGC
CATACCAGGACCTATATATGAAGCCCAAAGGCCAACTAGTCGGCATGCCC
CGCAGCCGACTGACTGACGATACAAAAAGTTAGTCAGTAGGACTATATAT
AAGTCGGAGCCGACTCGCAACCCTAGTAATTCCGTTTTTTTTTTCGATTT
CTCGATTTCTCATCTGACCACGAGCGGGATCAGCAACCATTGGCGGACCG
GTCAGTTGTATCCTTGTTTATTAAAGGAACAATTAATTTTTTTTTAATAA
CGATTTAGAGTCGATTATTCTGTGCAAAAATAACTGCGAGTTAGAATTTA
GGCGGTGAAACATCTGCGAAGCAAAGAGTAGGATTGTTCGCCTCACGAGC
GTAGCCTGTTAATATTATTTTAATAGCCCGTGGCTACCCACTATAGACAA
GCAATTTGTGACGTATATATACATTTTTTAACCAATCGACCAATCAATCC
TGTCCTCCTCCCCTCCCTCCCAGGTCATCGTGGCCCAGGTGGACTCGTGC
ATGCGGCACGTCATCACGCACTCTCGCTTCCCTCGACAGCTGAAGGAGGT
GGAGTACTTGGTGAGAAACAGCCGCTCGAAGGACCTCCGAGAGTCGGTCG
GGTCCTACGTCTTGCTGATGCTCAACTCGTGGCCCGCGGCGTCCATGGAA
AAGGAAGCGGCGCATCTAGAGGCGCTGATTTCGGTGAGCAGGGGGGATGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8168:5161..7710+

>mRNA_S-dermatodea_contig8168.16364.1 ID=mRNA_S-dermatodea_contig8168.16364.1|Name=mRNA_S-dermatodea_contig8168.16364.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at S-dermatodea_contig8168:5161..7710+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAACGTGCTGCTCCAGCTTGTCGCCAACGGCAACTCGCAACGTGCTGCTC
CAGCTTGTCGCCAACGGCAACTCGGTCATCGTGGCCCAGGTGGACTCGTG
CATGCGGCACGTCATCACGCACTCTCGCTTCCCTCGACAGCTGAAGGAGG
TGGAGTACTTGGTGAGAAACAGCCGCTCGAAGGACCTCCGAGAGTCGGTC
GGGTCCTACGTCTTGCTGATGCTCAACTCGTGGCCCGCGGCGTCCATGGA
AAAGGAAGCGGCGCATCTAGAGGCGCTGATTTCGGTGAGCAGGGGGGATG
AGTCATCGTGGCCCAGGTGGACTCGTGCATGCGGCACGTCATCACGCACT
CTCGCTTCCCTCGACAGCTGAAGGAGGTGGAGTACTTGGTGAGAAACAGC
CGCTCGAAGGACCTCCGAGAGTCGGTCGGGTCCTACGTCTTGCTGATGCT
CAACTCGTGGCCCGCGGCGTCCATGGAAAAGGAAGCGGCGCATCTAGAGG
CGCTGATTTCGGTGAGCAGGGGGGATGA
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