mRNA_S-dermatodea_contig81507.16349.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig81507.16349.1
Unique NamemRNA_S-dermatodea_contig81507.16349.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig81507.16349.1 vs. uniprot
Match: D7G8P3_ECTSI (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P3_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 1.800e-12
Identity = 29/35 (82.86%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:   10 QVYRVKDNVTYSVVLEEYDAEKGGWMPYTADDVQV 114
            QVYRVKDNVTYSVV+EE+D+EKGGW PYTA+DVQ+
Sbjct:  346 QVYRVKDNVTYSVVIEEFDSEKGGWRPYTAEDVQM 380
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BLAST of mRNA_S-dermatodea_contig81507.16349.1 vs. uniprot
Match: A0A836CE10_9STRA (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE10_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.990e-11
Identity = 26/35 (74.29%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:   10 QVYRVKDNVTYSVVLEEYDAEKGGWMPYTADDVQV 114
            QVYR+KD++TYS+VLEEYDA++GGW PY ADDVQ+
Sbjct:  348 QVYRIKDDITYSLVLEEYDADQGGWRPYAADDVQM 382
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BLAST of mRNA_S-dermatodea_contig81507.16349.1 vs. uniprot
Match: W7TVC9_9STRA (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVC9_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 6.070e-9
Identity = 22/34 (64.71%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:   13 VYRVKDNVTYSVVLEEYDAEKGGWMPYTADDVQV 114
            VYR+KD++ YS+V+EEYDA++GGW+PY A DVQ+
Sbjct:  354 VYRIKDDIIYSLVIEEYDADRGGWVPYQASDVQL 387
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BLAST of mRNA_S-dermatodea_contig81507.16349.1 vs. uniprot
Match: A0A8J5ED82_9ASCO (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit WBP1 n=1 Tax=Yarrowia sp. B02 TaxID=2768839 RepID=A0A8J5ED82_9ASCO)

HSP 1 Score: 47.8 bits (112), Expect = 3.900e-5
Identity = 18/35 (51.43%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:   10 QVYRVKDNVTYSVVLEEYDAEKGGWMPYTADDVQV 114
            ++Y+V +++TY+V L E+D EK  W+P+ ADDVQV
Sbjct:  287 KIYKVNEDITYTVALTEWDNEKEDWVPFIADDVQV 321
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BLAST of mRNA_S-dermatodea_contig81507.16349.1 vs. uniprot
Match: A0A8H7PP79_9FUNG (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit WBP1 n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7PP79_9FUNG)

HSP 1 Score: 47.0 bits (110), Expect = 7.310e-5
Identity = 19/35 (54.29%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:   10 QVYRVKDNVTYSVVLEEYDAEKGGWMPYTADDVQV 114
            + YR+KDN+TY++ + EYD EK  W PY A DVQ+
Sbjct:  301 ETYRIKDNITYTIEIAEYDGEK--WTPYHASDVQL 333
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig81507.16349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G8P3_ECTSI1.800e-1282.86Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
A0A836CE10_9STRA2.990e-1174.29Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
W7TVC9_9STRA6.070e-964.71Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
A0A8J5ED82_9ASCO3.900e-551.43Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
A0A8H7PP79_9FUNG7.310e-554.29Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig81507contigS-dermatodea_contig81507:530..643 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue7.4e-10
Seed eggNOG ortholog2880.D7G8P3
Preferred nameDDOST
KEGG koko:K12670
KEGG Pathwayko00510,ko00513,ko01100,ko04141,map00510,map00513,map01100,map04141
KEGG ModuleM00072
GOsGO:0000323,GO:0000902,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004576,GO:0004579,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005730,GO:0005737,GO:0005764,GO:0005765,GO:0005766,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005794,GO:0005886,GO:0005911,GO:0006464,GO:0006486,GO:0006487,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0006996,GO:0007030,GO:0008150,GO:0008152,GO:0008250,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009505,GO:0009506,GO:0009653,GO:0009664,GO:0009826,GO:0009987,GO:0010033,GO:0010256,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016049,GO:0016192,GO:0016740,GO:0016757,GO:0016758,GO:0018193,GO:0018196,GO:0018279,GO:0019538,GO:0030054,GO:0030141,GO:0030312,GO:0030659,GO:0030667,GO:0031090,GO:0031410,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031982,GO:0031984,GO:0032502,GO:0032940,GO:0032989,GO:0032991,GO:0034097,GO:0034389,GO:0034645,GO:0035577,GO:0036211,GO:0036230,GO:0040007,GO:0042110,GO:0042119,GO:0042175,GO:0042221,GO:0042582,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045229,GO:0045321,GO:0046649,GO:0046903,GO:0048589,GO:0048856,GO:0048869,GO:0050896,GO:0051179,GO:0051234,GO:0055044,GO:0060560,GO:0070013,GO:0070085,GO:0071554,GO:0071555,GO:0071669,GO:0071704,GO:0071840,GO:0071944,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098827,GO:0098852,GO:0099503,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.protein N-linked glycosylation via asparagine
EggNOG OGsKOG2754@1,KOG2754@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size114
Cds size114
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925324.710702-CDS-S-dermatodea_contig81507:529..6431622925324.710702-CDS-S-dermatodea_contig81507:529..643Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig81507 530..643 -
1694079856.1054046-CDS-S-dermatodea_contig81507:529..6431694079856.1054046-CDS-S-dermatodea_contig81507:529..643Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig81507 530..643 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig81507.16349.1prot_S-dermatodea_contig81507.16349.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig81507 530..643 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig81507.16349.1

>prot_S-dermatodea_contig81507.16349.1 ID=prot_S-dermatodea_contig81507.16349.1|Name=mRNA_S-dermatodea_contig81507.16349.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=38bp
ALPQVYRVKDNVTYSVVLEEYDAEKGGWMPYTADDVQV
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mRNA from alignment at S-dermatodea_contig81507:530..643-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig81507.16349.1 ID=mRNA_S-dermatodea_contig81507.16349.1|Name=mRNA_S-dermatodea_contig81507.16349.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=114bp|location=Sequence derived from alignment at S-dermatodea_contig81507:530..643- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTCTTCCGCAGGTTTATCGCGTGAAGGACAACGTTACGTACTCTGTGGT
GCTGGAAGAGTATGATGCTGAGAAGGGGGGCTGGATGCCCTACACGGCGG
ACGATGTACAGGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig81507:530..643-

>mRNA_S-dermatodea_contig81507.16349.1 ID=mRNA_S-dermatodea_contig81507.16349.1|Name=mRNA_S-dermatodea_contig81507.16349.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=228bp|location=Sequence derived from alignment at S-dermatodea_contig81507:530..643- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTCTTCCGCAGGTTTATCGCGTGAAGGACAACGTTACGTACTCTGTGGT
GCTGGAAGAGTATGATGCTGAGAAGGGGGGCTGGATGCCCTACACGGCGG
ACGATGTACAGGTGGCTCTTCCGCAGGTTTATCGCGTGAAGGACAACGTT
ACGTACTCTGTGGTGCTGGAAGAGTATGATGCTGAGAAGGGGGGCTGGAT
GCCCTACACGGCGGACGATGTACAGGTG
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