mRNA_S-dermatodea_contig81425.16340.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig81425.16340.1
Unique NamemRNA_S-dermatodea_contig81425.16340.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig81425.16340.1 vs. uniprot
Match: D7FTM7_ECTSI (Xylulose kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTM7_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 5.190e-21
Identity = 41/45 (91.11%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    1 QDFINFRLTGRMVASVNNASVRWHYSTAHGWPTSLLEKLDLSDLQ 135
            QDFINFRLTGRMVASVNNAS+RWHYST HGWP SLLEKLDL+DLQ
Sbjct:  162 QDFINFRLTGRMVASVNNASIRWHYSTTHGWPVSLLEKLDLADLQ 206
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BLAST of mRNA_S-dermatodea_contig81425.16340.1 vs. uniprot
Match: A0A6H5K691_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K691_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.840e-20
Identity = 41/45 (91.11%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    1 QDFINFRLTGRMVASVNNASVRWHYSTAHGWPTSLLEKLDLSDLQ 135
            QDFINFRLTGRMVASVNNAS+RWHYST HGWP SLLEKLDL+DLQ
Sbjct:  162 QDFINFRLTGRMVASVNNASIRWHYSTTHGWPVSLLEKLDLADLQ 206
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BLAST of mRNA_S-dermatodea_contig81425.16340.1 vs. uniprot
Match: A0A835YTS4_9STRA (Glycerol kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTS4_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.880e-15
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 QDFINFRLTGRMVASVNNASVRWHYSTAHGWPTSLLEKLDLSDL 132
            QDF+N RLTGRMVAS+NNAS+RWHY +  GWPTSLL  LDLSDL
Sbjct:  170 QDFMNLRLTGRMVASINNASIRWHYCSKRGWPTSLLAALDLSDL 213
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BLAST of mRNA_S-dermatodea_contig81425.16340.1 vs. uniprot
Match: A0A7S0RG04_9CHLO (Glycerol kinase n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RG04_9CHLO)

HSP 1 Score: 76.3 bits (186), Expect = 4.790e-15
Identity = 36/44 (81.82%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 QDFINFRLTGRMVASVNNASVRWHYSTAHGWPTSLLEKLDLSDL 132
            QDFIN RLTG M ASVNNA+VRWHYST  GWP SLLEKL+LSDL
Sbjct:  171 QDFINHRLTGVMCASVNNAAVRWHYSTQTGWPVSLLEKLNLSDL 214
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BLAST of mRNA_S-dermatodea_contig81425.16340.1 vs. uniprot
Match: A0A250WUX7_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WUX7_9CHLO)

HSP 1 Score: 75.9 bits (185), Expect = 6.540e-15
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:    1 QDFINFRLTGRMVASVNNASVRWHYSTAHGWPTSLLEKLDLSDL 132
            QD+INFRLT RM ASVNNASVRWHYSTA GWP+SLL+ L +S+L
Sbjct:  165 QDYINFRLTDRMCASVNNASVRWHYSTARGWPSSLLKSLGISEL 208
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BLAST of mRNA_S-dermatodea_contig81425.16340.1 vs. uniprot
Match: A0A383W972_TETOB (Glycerol kinase n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W972_TETOB)

HSP 1 Score: 73.2 bits (178), Expect = 5.810e-14
Identity = 31/44 (70.45%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 QDFINFRLTGRMVASVNNASVRWHYSTAHGWPTSLLEKLDLSDL 132
            QD++NF LTGRMVAS++N SVRWHY+++ GWP SLLEKL LS L
Sbjct:  162 QDYLNFHLTGRMVASISNVSVRWHYNSSRGWPVSLLEKLGLSSL 205
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BLAST of mRNA_S-dermatodea_contig81425.16340.1 vs. uniprot
Match: A0A7J7PJ27_9CHLO (Glycerol kinase n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PJ27_9CHLO)

HSP 1 Score: 69.7 bits (169), Expect = 9.630e-13
Identity = 29/44 (65.91%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 QDFINFRLTGRMVASVNNASVRWHYSTAHGWPTSLLEKLDLSDL 132
            QD++N+ LTG MVAS++N SVRWHY+++ GWP SLLEKL LS L
Sbjct:  162 QDYMNYHLTGNMVASISNVSVRWHYNSSRGWPVSLLEKLGLSSL 205
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BLAST of mRNA_S-dermatodea_contig81425.16340.1 vs. uniprot
Match: A0A2P6VDM7_9CHLO (Glycerol kinase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VDM7_9CHLO)

HSP 1 Score: 69.3 bits (168), Expect = 1.320e-12
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    1 QDFINFRLTGRMVASVNNASVRWHYSTAH--GWPTSLLEKLDLSDLQ 135
            QD++NF LTGRMVASVNNAS+RWHYST    GWPT LL+ + L  LQ
Sbjct:  161 QDYLNFNLTGRMVASVNNASIRWHYSTQRPGGWPTGLLKAIGLEGLQ 207
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BLAST of mRNA_S-dermatodea_contig81425.16340.1 vs. uniprot
Match: A0A7S0N3A4_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N3A4_9CHLO)

HSP 1 Score: 67.4 bits (163), Expect = 2.060e-12
Identity = 31/49 (63.27%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 QDFINFRLTGRMVASVNNASVRWHYSTAHG-----WPTSLLEKLDLSDL 132
            QD++NF+LTGRM AS+NN SVRWHYS +       WPTSLL+ LDLS+L
Sbjct:   67 QDYLNFKLTGRMCASINNVSVRWHYSASGSTPEERWPTSLLKSLDLSEL 115
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BLAST of mRNA_S-dermatodea_contig81425.16340.1 vs. uniprot
Match: A0A2P6TT72_CHLSO (Glycerol kinase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TT72_CHLSO)

HSP 1 Score: 67.0 bits (162), Expect = 8.590e-12
Identity = 32/47 (68.09%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    1 QDFINFRLTGRMVASVNNASVRWHYSTAH--GWPTSLLEKLDLSDLQ 135
            QDFINF LTGR  ASVNN S+RWHYST    GWP S+L+KL L  LQ
Sbjct:  162 QDFINFHLTGRWCASVNNVSIRWHYSTQRPGGWPISMLQKLGLEALQ 208
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig81425.16340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTM7_ECTSI5.190e-2191.11Xylulose kinase n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A6H5K691_9PHAE1.840e-2091.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YTS4_9STRA1.880e-1577.27Glycerol kinase n=1 Tax=Tribonema minus TaxID=3033... [more]
A0A7S0RG04_9CHLO4.790e-1581.82Glycerol kinase n=1 Tax=Chlamydomonas leiostraca T... [more]
A0A250WUX7_9CHLO6.540e-1577.27Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A383W972_TETOB5.810e-1470.45Glycerol kinase n=1 Tax=Tetradesmus obliquus TaxID... [more]
A0A7J7PJ27_9CHLO9.630e-1365.91Glycerol kinase n=1 Tax=Scenedesmus sp. NREL 46B-D... [more]
A0A2P6VDM7_9CHLO1.320e-1268.09Glycerol kinase n=1 Tax=Micractinium conductrix Ta... [more]
A0A7S0N3A4_9CHLO2.060e-1263.27Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
A0A2P6TT72_CHLSO8.590e-1268.09Glycerol kinase n=1 Tax=Chlorella sorokiniana TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig81425contigS-dermatodea_contig81425:253..387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue9.7e-17
Seed eggNOG ortholog2880.D7FTM7
Preferred nameXK-RPE
EggNOG free text desc.glycerol kinase activity
EggNOG OGsCOG0554@1,KOG2517@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925324.0738356-CDS-S-dermatodea_contig81425:252..3871622925324.0738356-CDS-S-dermatodea_contig81425:252..387Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig81425 253..387 +
1694079855.6670291-CDS-S-dermatodea_contig81425:252..3871694079855.6670291-CDS-S-dermatodea_contig81425:252..387Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig81425 253..387 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig81425.16340.1prot_S-dermatodea_contig81425.16340.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig81425 253..387 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig81425.16340.1

>prot_S-dermatodea_contig81425.16340.1 ID=prot_S-dermatodea_contig81425.16340.1|Name=mRNA_S-dermatodea_contig81425.16340.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=45bp
QDFINFRLTGRMVASVNNASVRWHYSTAHGWPTSLLEKLDLSDLQ
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mRNA from alignment at S-dermatodea_contig81425:253..387+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig81425.16340.1 ID=mRNA_S-dermatodea_contig81425.16340.1|Name=mRNA_S-dermatodea_contig81425.16340.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=135bp|location=Sequence derived from alignment at S-dermatodea_contig81425:253..387+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGACTTCATCAACTTTAGGCTGACCGGGCGCATGGTGGCCTCGGTAAA
CAATGCCTCGGTGCGTTGGCACTACTCCACCGCCCACGGCTGGCCGACCT
CGCTTCTCGAAAAGCTAGACCTGAGCGACCTACAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig81425:253..387+

>mRNA_S-dermatodea_contig81425.16340.1 ID=mRNA_S-dermatodea_contig81425.16340.1|Name=mRNA_S-dermatodea_contig81425.16340.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at S-dermatodea_contig81425:253..387+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGACTTCATCAACTTTAGGCTGACCGGGCGCATGGTGGCCTCGGTAAA
CAATGCCTCGGTGCGTTGGCACTACTCCACCGCCCACGGCTGGCCGACCT
CGCTTCTCGAAAAGCTAGACCTGAGCGACCTACAGCAGGACTTCATCAAC
TTTAGGCTGACCGGGCGCATGGTGGCCTCGGTAAACAATGCCTCGGTGCG
TTGGCACTACTCCACCGCCCACGGCTGGCCGACCTCGCTTCTCGAAAAGC
TAGACCTGAGCGACCTACAG
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