mRNA_S-dermatodea_contig81395.16335.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig81395.16335.1
Unique NamemRNA_S-dermatodea_contig81395.16335.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig81395.16335.1 vs. uniprot
Match: A0A835YPH3_9STRA (Iron permease FTR1 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPH3_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 3.640e-14
Identity = 30/62 (48.39%), Postives = 43/62 (69.35%), Query Frame = 1
Query:   22 GRLPPEQNSPSWNICEEASNDHEFWSLMRALFGYTCRPTPVEIISYILYWVFAMTYMTYKLQ 207
            G +    N P W+IC+  +ND + W + RALFGYTC P+P EI+ Y +YWV A+TY+ +KL+
Sbjct:  134 GEVQGVMNEPVWDICDCCANDAKGWDIFRALFGYTCAPSPWEILVYCVYWVIALTYLCFKLR 195          
BLAST of mRNA_S-dermatodea_contig81395.16335.1 vs. uniprot
Match: A0A835YQM0_9STRA (Iron permease FTR1 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQM0_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 8.100e-12
Identity = 27/62 (43.55%), Postives = 39/62 (62.90%), Query Frame = 1
Query:   22 GRLPPEQNSPSWNICEEASNDHEFWSLMRALFGYTCRPTPVEIISYILYWVFAMTYMTYKLQ 207
            G +    N P WNIC+  +   + W +   LFGYTC P+P EI+ Y LYWV A+TY+ +K++
Sbjct:  135 GEIQGAMNEPVWNICDCCNQADKGWDVFNRLFGYTCAPSPWEILVYCLYWVLALTYLCFKIR 196          
BLAST of mRNA_S-dermatodea_contig81395.16335.1 vs. uniprot
Match: A0A1Y1HJN3_KLENI (Similar to high-affinity iron permease n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HJN3_KLENI)

HSP 1 Score: 64.7 bits (156), Expect = 1.580e-10
Identity = 28/57 (49.12%), Postives = 39/57 (68.42%), Query Frame = 1
Query:   34 PEQNSPSWNICEEASNDHE-FWSLMRALFGYTCRPTPVEIISYILYWVFAMTYMTYK 201
            P  N P WNIC+  SND + F+ L +AL GYTC PT + +I+YI+YW+F +  + YK
Sbjct:  260 PWHNKPLWNICDCCSNDDQGFFELAKALVGYTCDPTFIHVITYIIYWIFVIGIVVYK 316          
BLAST of mRNA_S-dermatodea_contig81395.16335.1 vs. uniprot
Match: A0A1Y1IRQ1_KLENI (Similar to high-affinity iron permease n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IRQ1_KLENI)

HSP 1 Score: 60.1 bits (144), Expect = 7.100e-9
Identity = 27/70 (38.57%), Postives = 42/70 (60.00%), Query Frame = 1
Query:    1 PAPLRPLGRLPPEQNSPSWNICEEASN-DHEFWSLMRALFGYTCRPTPVEIISYILYWVFAMTYMTYKLQ 207
            P+P+    R  P QN P WNIC+   + D  F+ L RAL GY C PT +++++YI YW+  +  +  K++
Sbjct:  250 PSPVEEEDRFVPWQNRPLWNICKCCDDEDQGFFELARALVGYVCDPTIIQVVAYIAYWLLVLVIVAVKVK 319          
BLAST of mRNA_S-dermatodea_contig81395.16335.1 vs. uniprot
Match: A0A6V1P3W9_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P3W9_HETAK)

HSP 1 Score: 53.5 bits (127), Expect = 1.490e-6
Identity = 21/42 (50.00%), Postives = 32/42 (76.19%), Query Frame = 1
Query:   85 HEFWSLMRALFGYTCRPTPVEIISYILYWVFAMTYMTYKLQI 210
            HEFW+++RALFG+   P+PVE ISY  YWV  + ++ +KL++
Sbjct:  284 HEFWAIVRALFGFRGDPSPVEFISYWCYWVVCLAFVAFKLRL 325          
BLAST of mRNA_S-dermatodea_contig81395.16335.1 vs. uniprot
Match: E1ZPR3_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZPR3_CHLVA)

HSP 1 Score: 51.6 bits (122), Expect = 7.220e-6
Identity = 27/69 (39.13%), Postives = 40/69 (57.97%), Query Frame = 1
Query:   19 LGRLPPEQNSPSWN--------ICEEASNDHEFWSLMRALFGYTCRPTPVEIISYILYWVFAMTYMTYK 201
             G   P +++P +N         C   +ND  FWSL+RALFGYT +PT + ++ Y+LYW+  +  M YK
Sbjct:  222 FGNTFPYEDAPWFNKILWDTSGCCNMYTND--FWSLVRALFGYTDQPTALNLLYYLLYWMVVIFVMAYK 288          
BLAST of mRNA_S-dermatodea_contig81395.16335.1 vs. uniprot
Match: A0A2P6U456_CHLSO (Calcium-dependent kinase 1-like n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U456_CHLSO)

HSP 1 Score: 51.6 bits (122), Expect = 7.550e-6
Identity = 25/59 (42.37%), Postives = 36/59 (61.02%), Query Frame = 1
Query:   34 PEQNSPSWNI---CEEASNDHEFWSLMRALFGYTCRPTPVEIISYILYWVFAMTYMTYK 201
            P  N   WN    C+  +N  +FWS+MRALFGYT +PT + ++ Y+LYW   +  M +K
Sbjct:  201 PWYNKILWNTSGCCDMYNN--QFWSMMRALFGYTDQPTGLNLMYYLLYWAIVLALMAWK 257          
BLAST of mRNA_S-dermatodea_contig81395.16335.1 vs. uniprot
Match: A0A1Y1IM50_KLENI (Similar to high-affinity iron permease n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IM50_KLENI)

HSP 1 Score: 50.8 bits (120), Expect = 1.330e-5
Identity = 23/54 (42.59%), Postives = 32/54 (59.26%), Query Frame = 1
Query:   43 NSPSWNICEEASN-DHEFWSLMRALFGYTCRPTPVEIISYILYWVFAMTYMTYK 201
            N   WNIC   S+ D  F+ L RAL GY C PT +++I+YI YW+  +    +K
Sbjct:  261 NKALWNICSCCSDADQGFFELARALVGYVCDPTFIQVITYICYWIVVIGVFVFK 314          
BLAST of mRNA_S-dermatodea_contig81395.16335.1 vs. uniprot
Match: A0A2P6VGS2_9CHLO (Plasma membrane iron permease n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VGS2_9CHLO)

HSP 1 Score: 50.4 bits (119), Expect = 1.910e-5
Identity = 20/39 (51.28%), Postives = 30/39 (76.92%), Query Frame = 1
Query:   85 HEFWSLMRALFGYTCRPTPVEIISYILYWVFAMTYMTYK 201
            +EFWSL+RALFGYT +PT + ++ Y+LYW+  +  M +K
Sbjct:  251 NEFWSLVRALFGYTDQPTGLNLMYYLLYWIVVLASMAWK 289          
BLAST of mRNA_S-dermatodea_contig81395.16335.1 vs. uniprot
Match: A0A1D1ZTW3_AUXPR (Uncharacterized protein (Fragment) n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D1ZTW3_AUXPR)

HSP 1 Score: 49.7 bits (117), Expect = 3.270e-5
Identity = 23/57 (40.35%), Postives = 34/57 (59.65%), Query Frame = 1
Query:   34 PEQNSPSWNICEEASND-HEFWSLMRALFGYTCRPTPVEIISYILYWVFAMTYMTYK 201
            P  N   WN     + D +EFWSL+RALFGY   PT ++++ Y L+W   ++ M Y+
Sbjct:  157 PWSNKILWNTMGCCNPDTNEFWSLIRALFGYQAMPTNIQLLYYCLFWFVVLSAMAYR 213          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig81395.16335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A835YPH3_9STRA3.640e-1448.39Iron permease FTR1 family-domain-containing protei... [more]
A0A835YQM0_9STRA8.100e-1243.55Iron permease FTR1 family-domain-containing protei... [more]
A0A1Y1HJN3_KLENI1.580e-1049.12Similar to high-affinity iron permease n=1 Tax=Kle... [more]
A0A1Y1IRQ1_KLENI7.100e-938.57Similar to high-affinity iron permease n=1 Tax=Kle... [more]
A0A6V1P3W9_HETAK1.490e-650.00Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
E1ZPR3_CHLVA7.220e-639.13Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
A0A2P6U456_CHLSO7.550e-642.37Calcium-dependent kinase 1-like n=1 Tax=Chlorella ... [more]
A0A1Y1IM50_KLENI1.330e-542.59Similar to high-affinity iron permease n=1 Tax=Kle... [more]
A0A2P6VGS2_9CHLO1.910e-551.28Plasma membrane iron permease n=1 Tax=Micractinium... [more]
A0A1D1ZTW3_AUXPR3.270e-540.35Uncharacterized protein (Fragment) n=1 Tax=Auxenoc... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig81395contigS-dermatodea_contig81395:355..570 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size216
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925323.7224054-CDS-S-dermatodea_contig81395:354..5701622925323.7224054-CDS-S-dermatodea_contig81395:354..570Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig81395 355..570 -
1694079855.3636725-CDS-S-dermatodea_contig81395:354..5701694079855.3636725-CDS-S-dermatodea_contig81395:354..570Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig81395 355..570 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig81395.16335.1prot_S-dermatodea_contig81395.16335.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig81395 355..570 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig81395.16335.1

>prot_S-dermatodea_contig81395.16335.1 ID=prot_S-dermatodea_contig81395.16335.1|Name=mRNA_S-dermatodea_contig81395.16335.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=72bp
PAPLRPLGRLPPEQNSPSWNICEEASNDHEFWSLMRALFGYTCRPTPVEI
ISYILYWVFAMTYMTYKLQIA*
back to top

mRNA from alignment at S-dermatodea_contig81395:355..570-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig81395.16335.1 ID=mRNA_S-dermatodea_contig81395.16335.1|Name=mRNA_S-dermatodea_contig81395.16335.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=216bp|location=Sequence derived from alignment at S-dermatodea_contig81395:355..570- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCGCCCCCCTCCGCCCCCTGGGTCGCCTTCCTCCCGAACAGAACTCGCC TTCGTGGAACATCTGTGAAGAAGCCTCCAACGATCACGAGTTCTGGTCGC TCATGCGGGCGCTGTTCGGATACACTTGTCGGCCCACACCCGTCGAGATC ATATCTTACATCCTCTACTGGGTATTCGCCATGACTTACATGACCTACAA GCTGCAGATAGCGTGA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig81395:355..570-

>mRNA_S-dermatodea_contig81395.16335.1 ID=mRNA_S-dermatodea_contig81395.16335.1|Name=mRNA_S-dermatodea_contig81395.16335.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at S-dermatodea_contig81395:355..570- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCGCCCCCCTCCGCCCCCTGGGTCGCCTTCCTCCCGAACAGAACTCGCC
TTCGTGGAACATCTGTGAAGAAGCCTCCAACGATCACGAGTTCTGGTCGC
TCATGCGGGCGCTGTTCGGATACACTTGTCGGCCCACACCCGTCGAGATC
ATATCTTACATCCTCTACTGGGTATTCGCCATGACTTACATGACCTACAA
GCTGCAGATAGCGTGACCCGCCCCCCTCCGCCCCCTGGGTCGCCTTCCTC
CCGAACAGAACTCGCCTTCGTGGAACATCTGTGAAGAAGCCTCCAACGAT
CACGAGTTCTGGTCGCTCATGCGGGCGCTGTTCGGATACACTTGTCGGCC
CACACCCGTCGAGATCATATCTTACATCCTCTACTGGGTATTCGCCATGA
CTTACATGACCTACAAGCTGCAGATAGCGTGA
back to top