mRNA_S-dermatodea_contig81271.16327.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig81271.16327.1
Unique NamemRNA_S-dermatodea_contig81271.16327.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig81271.16327.1 vs. uniprot
Match: A0A7S0HVD7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HVD7_9EUKA)

HSP 1 Score: 77.0 bits (188), Expect = 6.530e-16
Identity = 31/38 (81.58%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    1 VIPCYTPECKQPDCIFCQSSKTNLCPAIRATQGKGGVP 114
            V+PCYTP+CK+PDCIFCQS KTNLCPAIRATQG+G +P
Sbjct:  137 VVPCYTPQCKEPDCIFCQSHKTNLCPAIRATQGQGVMP 174
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BLAST of mRNA_S-dermatodea_contig81271.16327.1 vs. uniprot
Match: D7G297_ECTSI (Formaldehyde dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G297_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 4.290e-15
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 VIPCYTPECKQPDCIFCQSSKTNLCPAIRATQGKGGVP 114
            VIPCYTPECKQ +CIFCQS+KTNLCP IRATQGKG +P
Sbjct:  147 VIPCYTPECKQAECIFCQSTKTNLCPTIRATQGKGVMP 184
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BLAST of mRNA_S-dermatodea_contig81271.16327.1 vs. uniprot
Match: A0A0M0JNU8_9EUKA (S-glutathione dehydrogenase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JNU8_9EUKA)

HSP 1 Score: 74.7 bits (182), Expect = 1.190e-14
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:    1 VIPCYTPECKQPDCIFCQSSKTNLCPAIRATQGKGGVP 114
            VIPCYTPEC+QPDCIFC SSKTNLCP IR TQG+G +P
Sbjct:  165 VIPCYTPECRQPDCIFCASSKTNLCPRIRTTQGQGVMP 202
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BLAST of mRNA_S-dermatodea_contig81271.16327.1 vs. uniprot
Match: A0A6G0WX48_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WX48_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.490e-14
Identity = 30/38 (78.95%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    1 VIPCYTPECKQPDCIFCQSSKTNLCPAIRATQGKGGVP 114
            VIPCYTPEC++P+CIFC+S+KTNLCP IRATQGKG +P
Sbjct:  110 VIPCYTPECQKPECIFCESTKTNLCPEIRATQGKGVMP 147
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BLAST of mRNA_S-dermatodea_contig81271.16327.1 vs. uniprot
Match: A0A7R9UH38_DIALT (Hypothetical protein (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UH38_DIALT)

HSP 1 Score: 70.9 bits (172), Expect = 1.540e-14
Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 VIPCYTPECKQPDCIFCQSSKTNLCPAIRATQGKGGVP 114
            VIPCYTPEC++P CIFC S KTNLCP IR+TQGKG +P
Sbjct:   94 VIPCYTPECREPSCIFCASPKTNLCPKIRSTQGKGLMP 131
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BLAST of mRNA_S-dermatodea_contig81271.16327.1 vs. uniprot
Match: A0A418F391_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418F391_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 2.380e-14
Identity = 30/38 (78.95%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 VIPCYTPECKQPDCIFCQSSKTNLCPAIRATQGKGGVP 114
            VIPCYTPEC++P+CIFC+S KTNLCP IRATQGKG +P
Sbjct:  113 VIPCYTPECQKPECIFCESPKTNLCPEIRATQGKGVMP 150
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BLAST of mRNA_S-dermatodea_contig81271.16327.1 vs. uniprot
Match: W4H086_9STRA (S-(Hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H086_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 2.940e-14
Identity = 30/38 (78.95%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 VIPCYTPECKQPDCIFCQSSKTNLCPAIRATQGKGGVP 114
            VIPCYTPEC++P+CIFC+S KTNLCP IRATQGKG +P
Sbjct:  113 VIPCYTPECQKPECIFCESPKTNLCPEIRATQGKGVMP 150
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BLAST of mRNA_S-dermatodea_contig81271.16327.1 vs. uniprot
Match: A0A485LHU3_9STRA (Aste57867_21004 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LHU3_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 2.940e-14
Identity = 30/38 (78.95%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 VIPCYTPECKQPDCIFCQSSKTNLCPAIRATQGKGGVP 114
            VIPCYTPEC++P+CIFC+S KTNLCP IRATQGKG +P
Sbjct:  119 VIPCYTPECQKPECIFCESPKTNLCPEIRATQGKGVMP 156
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BLAST of mRNA_S-dermatodea_contig81271.16327.1 vs. uniprot
Match: UPI000C77F217 (alcohol dehydrogenase class-3-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C77F217)

HSP 1 Score: 73.6 bits (179), Expect = 3.100e-14
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:    1 VIPCYTPECKQPDCIFCQSSKTNLCPAIRATQGKGGVP 114
            VIPCYTPECKQ DCIFCQS KTNLCP+IR TQG+G +P
Sbjct:  100 VIPCYTPECKQHDCIFCQSPKTNLCPSIRGTQGQGFMP 137
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BLAST of mRNA_S-dermatodea_contig81271.16327.1 vs. uniprot
Match: A0A812XNV1_SYMMI (Adh5 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812XNV1_SYMMI)

HSP 1 Score: 70.9 bits (172), Expect = 6.480e-14
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:    1 VIPCYTPECKQPDCIFCQSSKTNLCPAIRATQGKGGVP 114
            VIPCYTPEC+   CIFCQS+KTNLCPAIR+TQG+G +P
Sbjct:   93 VIPCYTPECRMSSCIFCQSTKTNLCPAIRSTQGQGVMP 130
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig81271.16327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0HVD7_9EUKA6.530e-1681.58Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
D7G297_ECTSI4.290e-1584.21Formaldehyde dehydrogenase n=2 Tax=Ectocarpus TaxI... [more]
A0A0M0JNU8_9EUKA1.190e-1481.58S-glutathione dehydrogenase n=1 Tax=Chrysochromuli... [more]
A0A6G0WX48_9STRA1.490e-1478.95Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7R9UH38_DIALT1.540e-1476.32Hypothetical protein (Fragment) n=1 Tax=Diacronema... [more]
A0A418F391_9STRA2.380e-1478.95Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
W4H086_9STRA2.940e-1478.95S-(Hydroxymethyl)glutathione dehydrogenase/class I... [more]
A0A485LHU3_9STRA2.940e-1478.95Aste57867_21004 protein n=1 Tax=Aphanomyces stella... [more]
UPI000C77F2173.100e-1481.58alcohol dehydrogenase class-3-like n=1 Tax=Eurytem... [more]
A0A812XNV1_SYMMI6.480e-1476.32Adh5 protein (Fragment) n=1 Tax=Symbiodinium micro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig81271contigS-dermatodea_contig81271:531..644 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue2.7e-12
Seed eggNOG ortholog2880.D7G297
KEGG rclassRC00050,RC00087,RC00088,RC00099,RC00116,RC00167,RC00320,RC00649,RC01715,RC01734,RC02273
KEGG koko:K00121,ko:K01070
KEGG ReactionR00527,R00623,R00754,R02124,R04880,R05233,R05234,R06917,R06927,R06983,R07105,R08281,R08306,R08310
KEGG Pathwayko00010,ko00071,ko00350,ko00625,ko00626,ko00680,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,ko05204,map00010,map00071,map00350,map00625,map00626,map00680,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01200,map01220,map05204
EggNOG free text desc.alcohol dehydrogenase (NAD) activity
EggNOG OGsCOG1062@1,KOG0022@2759
Ec32 ortholog descriptionformaldehyde dehydrogenase
Ec32 orthologEc-16_001960.1
EC1.1.1.1,1.1.1.284,3.1.2.12
COG Functional cat.C
CAZyCE1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size114
Cds size114
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925323.1477008-CDS-S-dermatodea_contig81271:530..6441622925323.1477008-CDS-S-dermatodea_contig81271:530..644Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig81271 531..644 +
1694079854.9545765-CDS-S-dermatodea_contig81271:530..6441694079854.9545765-CDS-S-dermatodea_contig81271:530..644Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig81271 531..644 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig81271.16327.1prot_S-dermatodea_contig81271.16327.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig81271 531..644 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig81271.16327.1

>prot_S-dermatodea_contig81271.16327.1 ID=prot_S-dermatodea_contig81271.16327.1|Name=mRNA_S-dermatodea_contig81271.16327.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=38bp
VIPCYTPECKQPDCIFCQSSKTNLCPAIRATQGKGGVP
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mRNA from alignment at S-dermatodea_contig81271:531..644+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig81271.16327.1 ID=mRNA_S-dermatodea_contig81271.16327.1|Name=mRNA_S-dermatodea_contig81271.16327.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=114bp|location=Sequence derived from alignment at S-dermatodea_contig81271:531..644+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGATCCCTTGCTACACCCCGGAGTGCAAGCAACCTGACTGTATCTTCTG
TCAGAGCAGCAAGACCAACCTCTGCCCCGCCATTCGGGCGACTCAGGGGA
AAGGTGGGGTGCCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig81271:531..644+

>mRNA_S-dermatodea_contig81271.16327.1 ID=mRNA_S-dermatodea_contig81271.16327.1|Name=mRNA_S-dermatodea_contig81271.16327.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=228bp|location=Sequence derived from alignment at S-dermatodea_contig81271:531..644+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGATCCCTTGCTACACCCCGGAGTGCAAGCAACCTGACTGTATCTTCTG
TCAGAGCAGCAAGACCAACCTCTGCCCCGCCATTCGGGCGACTCAGGGGA
AAGGTGGGGTGCCCGTGATCCCTTGCTACACCCCGGAGTGCAAGCAACCT
GACTGTATCTTCTGTCAGAGCAGCAAGACCAACCTCTGCCCCGCCATTCG
GGCGACTCAGGGGAAAGGTGGGGTGCCC
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