mRNA_S-dermatodea_contig8127.16326.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8127.16326.1
Unique NamemRNA_S-dermatodea_contig8127.16326.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig8127.16326.1 vs. uniprot
Match: D8LKQ5_ECTSI (Eukaryotic initiation factor 4G n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKQ5_ECTSI)

HSP 1 Score: 255 bits (652), Expect = 4.060e-76
Identity = 143/191 (74.87%), Postives = 159/191 (83.25%), Query Frame = 1 
Query:    1 GHMRFVGELYKVELLKEKHVHVAIHDMFGSADDPDEERLECMVKLLQTCGKKLDQTGSPDTVKDMKRLFKRISKLAESRQVSSRIRFMLRDLIELRKNNWVPRREEEKAKTMEQLHNDIAKEEESKNRGRGGGXXXXXXXXXXXSSALRPGSGDARVSSGTRPDSSSSASRPSAQAAPKVKDEDGWEVVPK 573
            GHMRFVGELYKVELLKEKHVH AIHDMFG+AD+PDEERLECMVKLLQTCGKKLD TGSPD VKDMKRLFKR+ K+A+ RQVSSRIRFMLRDLIELRKN+WVPRREEEKAKTM++LHNDIAKE           XXXXX      SS++RPGSGDARVS G+R +S+S+ SRP+  A    KD+DGWE VPK
Sbjct:  438 GHMRFVGELYKVELLKEKHVHAAIHDMFGNADEPDEERLECMVKLLQTCGKKLDHTGSPDIVKDMKRLFKRVGKVADGRQVSSRIRFMLRDLIELRKNHWVPRREEEKAKTMQELHNDIAKEXXXXXXXX---XXXXXPGGSSGSSSIRPGSGDARVSMGSRGESTSTGSRPTGLAVATKKDDDGWETVPK 625
[Close]
BLAST of mRNA_S-dermatodea_contig8127.16326.1 vs. uniprot
Match: A0A6H5L9P4_9PHAE (MI domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9P4_9PHAE)

HSP 1 Score: 234 bits (597), Expect = 1.770e-68
Identity = 133/195 (68.21%), Postives = 144/195 (73.85%), Query Frame = 1 
Query:    1 GHMRFVGELYKVELLKEKHVHVAIHDMFGSADDPDEERLECMVKLLQTCGKKLDQTGSPDTVKDMKRLFKRISKLAESRQVSSRIRFMLRDLIELRKNNWVPRREEEKAKTMEQLHNDIAKEEESKNRG-----RGGGXXXXXXXXXXXSSALRPGSGDARVSSGTRPDSSSSASRPSAQAAPKVKDEDGWEVVP 570
            GHMRFVGELYKVELLKEKHVH AIHDMFG+AD+PDEERLECMVKLLQTCGKKLDQTGSPD VKDMKRLFKR+ K+A+ RQVSSRIRFMLRDLIELRKN WVPRREEEKAKTM++LHNDIAKE            R GG           SS++RPGSGDA               RP+  A    KD+DGWE VP
Sbjct:  408 GHMRFVGELYKVELLKEKHVHAAIHDMFGNADEPDEERLECMVKLLQTCGKKLDQTGSPDIVKDMKRLFKRVGKVADGRQVSSRIRFMLRDLIELRKNYWVPRREEEKAKTMQELHNDIAKEXXXXXXXXXXXXRPGGSSG--------SSSIRPGSGDAXXXXXXXXXXXXXXXRPTGLAVAAKKDDDGWETVP 594
[Close]
BLAST of mRNA_S-dermatodea_contig8127.16326.1 vs. uniprot
Match: A0A836CBQ1_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBQ1_9STRA)

HSP 1 Score: 157 bits (396), Expect = 7.960e-41
Identity = 110/242 (45.45%), Postives = 137/242 (56.61%), Query Frame = 1 
Query:    1 GHMRFVGELYKVELLKEKHVHVAIHDMFGSADD----PDEERLECMVKLLQTCGKKLDQ-TGSPDTVKDMKRLFKRISKLAE-----SRQV---------------SSRIRFMLRDLIELRKNNWVPRREEEKAKTMEQLHNDIAKEE-------------------ESKNRGRGGGXXXXXXXXXXXSSALRPGSGDARVSSGTRPDSSSSASRPSAQAAPKVKDEDGWEVVPKKGKGAAG 594
            GHMRFVGELYKV LLKEK+VH++I ++ G  +D    PDEE+LECMVKL+ T G +++Q   SPD VK+ KR FKRI KL+E     SRQV               + R+RFMLRDL++LR N+WVPRR EEKAKT+ Q+HN++A+EE                   E+K R  GG             S+   GSG   V SG R   + SA  P A        +DGWE VP KGK A G
Sbjct:  188 GHMRFVGELYKVGLLKEKYVHLSIEELLGMEEDGNVMPDEEKLECMVKLMSTVGAQMEQHPSSPDFVKNFKRYFKRIKKLSEDTEHVSRQVLWAPPQSSTVLQAHAALRLRFMLRDLVDLRSNDWVPRRAEEKAKTLAQIHNEVAREEGVAGDACRGCWGQWGMGSAEAKARKAGGDGRRHGSSVPSRPSSSGVGSGSQDVRSGGRSGYTPSAPAPVA--------DDGWETVPAKGKRAGG 421
[Close]
BLAST of mRNA_S-dermatodea_contig8127.16326.1 vs. uniprot
Match: A0A4D9D503_9STRA (MI domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D503_9STRA)

HSP 1 Score: 130 bits (328), Expect = 1.440e-31
Identity = 93/203 (45.81%), Postives = 123/203 (60.59%), Query Frame = 1 
Query:    1 GHMRFVGELYKVELLKEKHVHVAIHDMFGSADDPDEERLECMVKLLQTCGKKLDQTG--SPDTVKDMKRL----FKRISKLAESRQV-SSRIRFMLRDLIELRKNNWVPRREEEKAKTMEQLHNDIAKEEESKNRGRGGGXXXXXXXXXXXSSALRP-GSG--DARVSSGTRPDSSSSASRPSAQAAPKVKDEDGWEVV-PKK 576
            GHMRF+GEL+  ELLKE+HVH  I D+FG  D+PDEE+L C+ KLL T GKKL+     + +T K  +RL    F+ + KL++S  V SSRIR +L+DL ELR+NN+VPRR  E AKT+ Q+H + A+E  +K +  G                 RP GSG  D R   G    S  S+S  ++  +P + DEDGWE V PKK
Sbjct:  434 GHMRFIGELFLKELLKEEHVHGCIKDLFGEEDNPDEEKLACLCKLLSTTGKKLELLAEVNAETSKKQRRLLNKYFEEVYKLSQSVGVLSSRIRCLLKDLFELRQNNYVPRRAVETAKTLSQVHEEAAREALAKGQSSGPKSVGGGKMTGNSGGGGRPMGSGAQDTRKEKGFSETSRQSSS--ASLTSPSIVDEDGWETVGPKK 634
[Close]
BLAST of mRNA_S-dermatodea_contig8127.16326.1 vs. uniprot
Match: A0A7S2BR93_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BR93_9STRA)

HSP 1 Score: 128 bits (321), Expect = 1.260e-30
Identity = 89/197 (45.18%), Postives = 119/197 (60.41%), Query Frame = 1 
Query:    1 GHMRFVGELYKVELLKEKHVHVAIHDMFGSADDPDEERLECMVKLLQTCGKKLDQT--GSPDTVKDMKRLFKRISKLAESRQVSSRIRFMLRDLIELRKNNWVPRREEEKAKTMEQLHNDIAKEEESKNRGRGGGXXXXXXXXXXXSSALRPGSGDARVSSGTRPDSSSSASRPSAQAAPKVKDEDGWEVVPKKGKG 585
            GHM+FVG+LY+VELL  K +H  I ++FG  D+ DEE+L+C+  LL T GK+L+          K MK+  K +  L  +  +SSRIRFM+RDL+E+R NNW  RREEE AKT+ ++H+D+A+EE + N G+GGG  XXXXXXXXX      G     VS+  +P  S                 DGWE+VP   KG
Sbjct:  489 GHMKFVGQLYRVELLSVKIMHYCIQELFGEGDNLDEEKLQCLCTLLTTIGKQLEDACANQAKQAKMMKKYIKELKSLGGNMTLSSRIRFMIRDLLEMRLNNWTARREEESAKTIAEIHDDVAREEAA-NAGKGGGHKXXXXXXXXX--XXXXGGSSRAVSAPAKPAES-----------------DGWEMVPSTSKG 665
[Close]
BLAST of mRNA_S-dermatodea_contig8127.16326.1 vs. uniprot
Match: F0Y1G5_AURAN (MIF4G domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y1G5_AURAN)

HSP 1 Score: 112 bits (279), Expect = 7.310e-27
Identity = 56/118 (47.46%), Postives = 83/118 (70.34%), Query Frame = 1 
Query:    1 GHMRFVGELYKVELLKEKHVHVAIHDMFGSADDPDEERLECMVKLLQTCGKKLDQTG--SPDTVKDMKRLFKRISKLAESRQVSSRIRFMLRDLIELRKNNWVPRREEEKAKTMEQLH 348
            GHM F+G LYK E+LKE  +H  + ++FG  D+PD E++EC+ KL+ T GK+LD       +++K MK  FK++ KLA ++++ SRIRFM++DL ELR + W PRR  E AKT+ ++H
Sbjct:  131 GHMFFIGALYKHEMLKESIMHHCVQELFGDPDEPDGEKIECLAKLMATIGKQLDAAALEKKESMKFMKAYFKQLKKLAVNQKLESRIRFMVKDLCELRDDLWKPRRAVETAKTIAEIH 248
[Close]
BLAST of mRNA_S-dermatodea_contig8127.16326.1 vs. uniprot
Match: A0A7S3NGS0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NGS0_9STRA)

HSP 1 Score: 115 bits (289), Expect = 2.350e-26
Identity = 59/134 (44.03%), Postives = 94/134 (70.15%), Query Frame = 1 
Query:    1 GHMRFVGELYKVELLKEKHVHVAIHDMFGSADDPDEERLECMVKLLQTCGKKLD----QTGSPDTVKDMKRLFKRISKLAES----RQVSSRIRFMLRDLIELRKNNWVPRREEEKAKTMEQLHNDIAKEEESK 378
            GHM F+G LYK+ELL+E  ++  I ++FG  D+PD E++EC+ KL  + GKKLD    ++G  ++ + MK  FK+I +LA +     ++ +RIR++LRDL ELR+N+W+PRR+ E AKT+ ++H +  +EE+ K
Sbjct:  399 GHMFFIGALYKLELLREGVMYSCIEELFGDPDEPDAEKIECLAKLFTSIGKKLDLAALESGKKESQRRMKAYFKQIKRLATNANNDNKLDTRIRYLLRDLYELRENDWIPRRKVESAKTIAEIHREAQREEDIK 532
[Close]
BLAST of mRNA_S-dermatodea_contig8127.16326.1 vs. uniprot
Match: A0A7S2FBL7_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FBL7_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.030e-23
Identity = 55/128 (42.97%), Postives = 86/128 (67.19%), Query Frame = 1 
Query:    1 GHMRFVGELYKVELLKEKHVHVAIHDMFGSADDPDEERLECMVKLLQTCGKKLDQTGSPDT-----VKDMKRLFKRISKLAESRQVSSRIRFMLRDLIELRKNNWVPRREEEKAKTMEQLHNDIAKEE 369
            GHM+FVGELY+V LL +K +H  I D+FG+ ++PDEE+L C+  LL + G +L+++ +  T             K +S + +  +++SRIRFM++DL+E+R N W  RRE EKAKT+ ++H D A++E
Sbjct:  177 GHMKFVGELYRVHLLSDKIIHFCIQDLFGNPEEPDEEKLACLCTLLTSIGPQLEESATQSTKYAXXXXXXXXELKALSNMPD--KLNSRIRFMIKDLLEMRANGWTARRETEKAKTIAEIHEDAARDE 302
[Close]
BLAST of mRNA_S-dermatodea_contig8127.16326.1 vs. uniprot
Match: UPI001425A668 (eukaryotic translation initiation factor 4 gamma 3-like isoform X1 n=3 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425A668)

HSP 1 Score: 107 bits (267), Expect = 2.260e-23
Identity = 57/123 (46.34%), Postives = 87/123 (70.73%), Query Frame = 1 
Query:    1 GHMRFVGELYKVELLKEKHVHVAIHDMFGSADDPDEERLECMVKLLQTCGKKLDQTGSPDTVKDMKRLFKRISKLAESRQVSSRIRFMLRDLIELRKNNWVPRREEEKAKTMEQLHNDIAKEE 369
            G+++F+GEL+K+++L E  +H  I  +  +ADD   E LECM KLL T GK+LD   +      M + F ++ K+ +SR+ ++RIRFMLRD++ELR+NNWVPRRE+ K KT++Q+H +  +EE
Sbjct:  929 GNIKFIGELFKIKMLTEHIMHSCIMQLLKAADD---ESLECMSKLLSTIGKELDHDKARFR---MDQYFTQVDKIVKSRKNNNRIRFMLRDVLELRENNWVPRREDNKPKTIDQIHQEAREEE 1045
[Close]
BLAST of mRNA_S-dermatodea_contig8127.16326.1 vs. uniprot
Match: A0A7S3Y7R0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y7R0_HETAK)

HSP 1 Score: 100 bits (249), Expect = 5.700e-23
Identity = 54/124 (43.55%), Postives = 85/124 (68.55%), Query Frame = 1 
Query:    1 GHMRFVGELYKVELLKEKHVHVAIHDMFGSADDPDEERLECMVKLLQTCGKKLDQTGSPDTVKD-MKRLFKRISKLAESRQVSSRIRFMLRDLIELRKNNWVPRREEEKAKTMEQLHNDIAKEE 369
            GH+RF+GELYK  L++E+ VH  + ++FG  D PDEE+L   V+LL T G +L++  S D  +  +K   K   +L++  ++SSR+RF+L+DL++LR+ +WVPRREE +A T  Q+ +   +EE
Sbjct:   58 GHIRFIGELYKCGLVREQIVHRCVVELFGDPDAPDEEQLASAVRLLTTVGAQLERGASNDNYRHAVKAYAKEARRLSKDPRLSSRVRFLLQDLVDLRECHWVPRREEAQATTKAQVKSAALREE 181
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8127.16326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKQ5_ECTSI4.060e-7674.87Eukaryotic initiation factor 4G n=1 Tax=Ectocarpus... [more]
A0A6H5L9P4_9PHAE1.770e-6868.21MI domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A836CBQ1_9STRA7.960e-4145.45Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
A0A4D9D503_9STRA1.440e-3145.81MI domain-containing protein n=2 Tax=Monodopsidace... [more]
A0A7S2BR93_9STRA1.260e-3045.18Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
F0Y1G5_AURAN7.310e-2747.46MIF4G domain-containing protein (Fragment) n=1 Tax... [more]
A0A7S3NGS0_9STRA2.350e-2644.03Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2FBL7_9STRA1.030e-2342.97Hypothetical protein n=2 Tax=Florenciella parvula ... [more]
UPI001425A6682.260e-2346.34eukaryotic translation initiation factor 4 gamma 3... [more]
A0A7S3Y7R0_HETAK5.700e-2343.55Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8127contigS-dermatodea_contig8127:426..7729 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score256.1
Seed ortholog evalue1.3e-65
Seed eggNOG ortholog2880.D8LKQ5
KEGG koko:K03260
KEGG Pathwayko03013,ko05416,map03013,map05416
KEGG ModuleM00428
GOsGO:0000932,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010494,GO:0016043,GO:0016281,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0031369,GO:0032991,GO:0034063,GO:0034622,GO:0034641,GO:0034645,GO:0035770,GO:0036464,GO:0042254,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.translation initiation factor activity
EggNOG OGsKOG0401@1,KOG0401@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03012,ko03019
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptioneukaryotic initiation factor 4G
Ec32 orthologEc-07_004420.1
Exons6
Model size612
Cds size606
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925323.0420997-CDS-S-dermatodea_contig8127:425..5521622925323.0420997-CDS-S-dermatodea_contig8127:425..552Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8127 426..552 -
1694079854.8641796-CDS-S-dermatodea_contig8127:425..5521694079854.8641796-CDS-S-dermatodea_contig8127:425..552Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8127 426..552 -
1622925323.055019-CDS-S-dermatodea_contig8127:1953..20961622925323.055019-CDS-S-dermatodea_contig8127:1953..2096Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8127 1954..2096 -
1694079854.8768613-CDS-S-dermatodea_contig8127:1953..20961694079854.8768613-CDS-S-dermatodea_contig8127:1953..2096Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8127 1954..2096 -
1622925323.0676281-CDS-S-dermatodea_contig8127:3561..36341622925323.0676281-CDS-S-dermatodea_contig8127:3561..3634Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8127 3562..3634 -
1694079854.8890207-CDS-S-dermatodea_contig8127:3561..36341694079854.8890207-CDS-S-dermatodea_contig8127:3561..3634Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8127 3562..3634 -
1622925323.0791643-CDS-S-dermatodea_contig8127:5423..55031622925323.0791643-CDS-S-dermatodea_contig8127:5423..5503Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8127 5424..5503 -
1694079854.9046745-CDS-S-dermatodea_contig8127:5423..55031694079854.9046745-CDS-S-dermatodea_contig8127:5423..5503Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8127 5424..5503 -
1622925323.088962-CDS-S-dermatodea_contig8127:6896..70191622925323.088962-CDS-S-dermatodea_contig8127:6896..7019Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8127 6897..7019 -
1694079854.9155204-CDS-S-dermatodea_contig8127:6896..70191694079854.9155204-CDS-S-dermatodea_contig8127:6896..7019Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8127 6897..7019 -
1622925323.1026657-CDS-S-dermatodea_contig8127:7663..77231622925323.1026657-CDS-S-dermatodea_contig8127:7663..7723Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8127 7664..7723 -
1694079854.9277208-CDS-S-dermatodea_contig8127:7663..77231694079854.9277208-CDS-S-dermatodea_contig8127:7663..7723Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8127 7664..7723 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925323.113361-UTR-S-dermatodea_contig8127:7723..77291622925323.113361-UTR-S-dermatodea_contig8127:7723..7729Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8127 7724..7729 -
1694079854.9366243-UTR-S-dermatodea_contig8127:7723..77291694079854.9366243-UTR-S-dermatodea_contig8127:7723..7729Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8127 7724..7729 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8127.16326.1prot_S-dermatodea_contig8127.16326.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8127 426..7723 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8127.16326.1

>prot_S-dermatodea_contig8127.16326.1 ID=prot_S-dermatodea_contig8127.16326.1|Name=mRNA_S-dermatodea_contig8127.16326.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=202bp
MRFVGELYKVELLKEKHVHVAIHDMFGSADDPDEERLECMVKLLQTCGKK
LDQTGSPDTVKDMKRLFKRISKLAESRQVSSRIRFMLRDLIELRKNNWVP
RREEEKAKTMEQLHNDIAKEEESKNRGRGGGNSARGGGGSSGSSALRPGS
GDARVSSGTRPDSSSSASRPSAQAAPKVKDEDGWEVVPKKGKGAAGGDGW
SQ
back to top

mRNA from alignment at S-dermatodea_contig8127:426..7729-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8127.16326.1 ID=mRNA_S-dermatodea_contig8127.16326.1|Name=mRNA_S-dermatodea_contig8127.16326.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=7304bp|location=Sequence derived from alignment at S-dermatodea_contig8127:426..7729- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCCACATGCGATTTGTCGGGGAGCTCTACAAGGTGGAGCTGCTGAAGGA
GAAGCATGTGCACGTGGTGAGTTGTTTTTTGCTATTTTCTGACGTTCTCT
TTGTGTTTTTTTTCTTCTCAATAGTTTTTCCAGGGATGCGTACTGTGTAG
GTATGTTTCTATATACTTCGTATGTATTTTAAACAGCGCTAAGCGCTATT
ATGCTATTATCCAATGGTGGAGACTGTAGTGTAAGTGTACGTGTAAGTGT
AAGGTGTAAGTGCATGTGTAGGGTGTAATTTGGGGCAGGGGTATATACAA
TCAGGTACACAGCCTACACGTGTATTTTTGAATCGGTATGATACAATCGC
TGATTTGTACCTATAAATACACACACGGTATTGATGAAACCACAACAACC
AGGTACAATTATAATTAACTACACTTGTACATGGTTGTTGTACACTCGTT
GGAGCTGGCCGTAGTAAAGTACGATAAGGACCTGTGGAGAGGAGAGGGAG
CATTGCCCGAGTCCGAGTCCGAGTCCTCTTCTAGCGTTCTTCTATATCTG
GGGTACTATTTATTATTATTATTTTGTTTTGAGTGATTTCGTGTTTTTTT
TTCGCAACCCGTTTTTTTGTTTTTGTGGTGGTGGTTTTTGTTTGTGTTGA
TTTCGTGTTTTTTTTTCTTGTTCTTTTTTCAACCCATTTTTGTTTTGCTT
TGTACGTCAGGCTATCCACGACATGTTCGGCAGCGCAGACGACCCGGACG
AGGAGCGGCTGGAGTGTATGGTGAAGCTTCTGCAGACGTGCGGGAAGAAG
CTGGACCAGACAGGCTCGCCCGACACGGTCAAGGTGAGTAAAACACTCAT
GTTATGTTATTTATTTAGTTAATTTGATGTGATGTGATTCGATTCGATTT
GATTGGTTGACGGATTTGATTGATTTATTTGAAATTGGTTTGTTTTAATT
TAATTGGTTTGATTGGTTGAGTTTTCTATTGATGGATTGACTGCCTGACT
TGATTGATTGATTGATTGATTGGTTGATTTATTATATTTGATGTAATGCA
CCAGAAGCCCATGTGGTCTTGCCTTATCGTGCAATATGTGCTCTATGATA
CAATATCAATCTTTCTGCCTGAAAAGTAATAAAATAAAATAAAATAAAAT
AAAACGTACTACTGTATATTATAACAGTGTCTGGGCCAATGTTAAGAAAC
AAGGCCTGAATACTGAGAGCCGGTCTTAACCTCCAGAAAACTAAACTAAA
CTAAACTAAACTAAGTTCAAAATATTTTATTTTATTTTATTTACGTTCAG
GGTACTTTACTGACCGTCGGTCGTGGTGGTGGCCGCCACACTTTTGGAGT
TTAGTGGGGACCTCTACAACGCGGGCACCTTAAAAAACGAACCCAGAAAA
ACTCTAAAACGGGCTGTTCACGGCAAAGGGGAACATAAACAACCGCGGAC
CTCAGCAACTTGACAGTCCTATCGTTGGGGGCACTGCAGCTGCTCCAGTA
CTGCTGGCAGCAGGCCACGGCGGCGAGCGATAGAGAGCCCCCCCCTGCGG
GGCGGAGCGCGACTGGGGTTGCGGCTGGAAGTCTGGTTGGCGCGCCGCCG
TTTGCGCGACCTCTGTGGGGCGATTGCGGCGGTTTCCCCGCCAGTTGTTG
CATGGTTCGAGGCAAAACTTAGCCCGTTGAGGGCATCGGCGGTGGTCAAA
ATCACACTCCCCGCCTGGACGTTGGGTAAGAATGGTTGACGTCTACTGGT
GGTCTGTCGGTGGTGTGTCGGCTGCATGCTGATATGAGAGAGTCATCGCA
GCGATGGCCGCCAGCCACCCCCTGCACTCACTCAAGCCAGTCTGCGCTGT
GCAGAAACTGCTGTTGTTGTTGAACGATAGATAGCCAACGCTGTTGTAGA
TACTCCTGTCTAGTTGTAATTTTTTTCGAGGGCCGGGGAGAAGGCAGAGT
ACCTGCTGCTGGGGGAGACAATGCAGCGCGGGGGGGTGGGTGGACTGCGT
CTATTCTCACCCTTACAACCGACCGACTGGCCGGCCCGCCCGCCGATGGT
GTTGCCGATCCCGCTCGCCCGTGGTGAGATGAAAAATCGAGAAATCGAAT
GTTTACCTATTGATTGCGAGAGCAAAAGCGTGATTTATCAGATGACATGC
ACTCACTCATGCGCGTTCAATTTTTGTGCTGTGGATTTTTCCCGTGTTGT
GTCTGTGTCTGTGTCTGTTTTGGCAGGACATGAAGCGGCTGTTCAAACGC
ATCTCGAAGCTCGCGGAGTCCCGTCAGGTCTCCAGCCGCATTCGATTCAT
GCTCAGGTGAGAAACAAAATGTATTCTCCGACGGTTGTCATGTCATGTGT
GTTGGGTTGTATAATACTGTAGCAAAGCTTGGAACGACGTATTGTACGTG
CAGAGGTACTCTATTAATAGCTTTTAATTATTGATTCTTGATTCTTGATT
CTGGATTCTGGATTCTTGATTCTGCATTCTTGATTCTTGATTGATTGATT
GAATGAATGTTGATTGATTGGTTGGTTGATAGGCTGATTGACTGATTGAT
TGGTTGATTGGTTGATTGATTGGTGATTGTTGATTCTTGATTGGTTGATT
GACTGATTGTTGATTGATTGGTAGGTTGATTGGCTGATTGATTGGTTGCT
TGGTTGATTGATTGCTGATTGACTGATTGATTAATTAATTAATTAATTGA
TTAATTGATTACCTGATTGATTGTTTGATTGTTTGATTGATTGACTGATT
GATGAATTTTATCACACTTGCAACGGACCGGCCCACCAATGGTTGCAGAT
CCCGCTTGCGGTCAGATGAGAAATCGAGAGATCGGGTAAAAAAACAACGG
AGTAATATATACCTGTAACATATATAGTATACTTCGAAGTACACAAACAA
GGAATGGACATAAAATCTCGGAAACAGGGTGCACATTCATACCCACAAGA
GCACCACAACCGAGGTCGACGCTTGTCGCGGTAAGGGGTGGTAAGGGGTG
GAGGAGTGTGGCTATCCTAGCATCACCACGCGCTGTTGAGTGTCATGACC
GTATACTATACTATTAACCCTTTTGGTATAATACTATTAATAGCCCCTAA
TACTAATACTAATACTAATACTGTTCGGAGCGTCTGTTAGCACGTAACGA
GGCGTGCTTGAAGCGGGGCCCTGGGGAACTCATGGGTTATGACGCAGGAA
TGAGAGAGGACGGAGCTCAAGGGAAACGGGGCTGCAGCTGTCGACTGGCA
TCGAGAGATTTTTTGGTCGTTTCGGAGAGCCCTATTCATTATTCATACTA
ATGTACTGATGTACTAATTTAATAGTACAACGCGAGTGTGGGCTGGTTTA
GCAACGTTCGTTCGATGTTACCGTTGGTTTGGGGTATTGGAGATGTTCGT
GCGCGCTGGGCTTGCTGTACCGTGCCTGAAGCTTAACCGTTAACCCTTTT
GGGACTAAGGCTGTTTTAGGGTAACTATTTGCTTTTATTATATACCCTTT
TGTTTCGGGACTAGGGCTGTTTTCGGGTAACTGTTTGCTATTANNNNNNN
NNNTGTCCCAAAAGGGTAAATGATAATAGCAAACAGTTACCCGAAAACAG
CTTTAGTCCCAAAAGTGTTGAGCTTTAAGCGTGGGAAATTTGTCCCCACT
TCCTTCCCGCCGCCGCTATGTGTGTACGTACGCCGGGGAGAATTGTCACC
GTTCGGATATACCTTTTCGATGTGAAGCATATCGATGGCTCCCGAAACAA
GCCCAGTTCCAATAATGTTGACGCTGGCGCCCCCTTGATTTTGTCGACGT
TTTTTTCTTCACGGGTTGATTTTGTTATATGCAGATCCAGAGTTTACGTA
TCATACAAGTATATCTATATATATAGAGTGTGGGACCATCGCCACCATAA
ATATTAAATCATGGCCAACTTATTTGGAAACCCTCTCCTCTAGATGTTTC
GTAATGTATGTACATCACATTGTACTATAATACGTTCAGAACTAAAAACT
GCTGTCCAATTTACTGGATGTGGATAGGCGTCAAAGCGGTTTTCTTTTGG
TAAAAATGTGTTCTGTCTGCTCTGTTGTGTTGGTGTGAACTGAAGGGACT
TGATCGAGCTGAGGAAGAACAACTGGGTGCCAAGAAGGGAGGAGGAAAAG
GCTAAGACCATGGAACAGGTGGGTTTTACTTTTCTTTTTCTTTTTCTTTT
CATTTTCATTTTTATTTTTACCTCATTTCGTTGATTCATGTGCATGTATT
AATATCAATATTAATAGTAGGTTTTGTTTGGTTGATTGGTTTCCTGATTG
ATTTATTTATTTATTTATTTATTGACTGATGGATTGATCCATGGAACACG
TGGGTTTTATTTTTATTTTTACCTCGTTTCGTTGATTCATGTGCATGTGT
TATGTTTTACTTTTCTTTTTCTTTTTCTTTTCATTTTCATTTTTATTTTT
ACCTCATTTCGTTGATTAATATTAACAGTAGGTTGTGTTTGGTTGATCGG
TTTCTTGATTGATTGATTTATTTATTTATTAAATGATGGATTGATTGATT
GATTGGTTGGTTAGTTGATTGATTGCTCGGTTGGTTGATGGAGTGATTTG
GTTGATCGATTGATTGATTGATTGATTGATTGATTGATTGATTTGGTTGA
TGGATTTATTTGCTTGATCGATTGGTTGATTGATTTATTTATTTATTTAT
TGACTTATTGATTTCTTGATTGGTTGGTGGGTTGATTGATTGATTGGTTG
ATATATTGATGGATTGATTTGATTGATTGATTTGATTGATTGATTGATTG
GCTGATTGATTGCTTGGTTGATTGATTTCTTGATTTCTTTATTCATTTAT
TGATTGATTGATTGGTTGCTTGGTTGGCTGATTAGTTGATTGGTGGATTG
ATTGATTTGGTTTATTGATTGGTTGATGGATCAGTTGACTGATTGCTCGA
TTATTTATATTTGCGGCAACGATTGCGGCCTCTCCCGCGAGTGGTCAGAT
GATAAACCAAAACAATCGACAAAACACTAAAAACTACGAATTTTGAATTT
TGAAATAGAAGCGGCCTGATAGCGATCTCGAGTTGAGCAAAAAAAAAAAA
ACTAAACCCAAATCTAGCACGATTGCTGATGCAAAGTTGTGAAGCCACTA
TTAATACTTGTTTTTTGGTAGAAAAGAAAGAGCACCTTCGCTCTCTTCCT
AACGCACACCTCACGGGCGTAGCCGTGGCTATCATACCTAATTAAGTACA
GTACTAGCAAAATATCTTATTAATTAATGCAACAACGACCGATTGTGTAA
ATTGATTTTAGACAAGGACGCTGTCTGATGCCAAACAACTTGATGTTTTG
TGTTGAGCGATTTTTTTTTAATTAAAGCGAACACACAGCAGTGACACGCA
CAGCAGCGACACTCACATTAGCTCGACCGCGTTCAGTCCGCATATCGTCC
TGCCAACGCACACCTCACACGGGCGTAGCCGTGGCTGCCCACTAGTACTA
TTATACTATTATACTGTATAGAGCTCTGATATTATTATATTATGATATTA
TACCAGGTATGAAACTGTGATGGACCCACGTGGTCACGCAAACATAAGAA
ACATGCGCATATGTACGCTCACACCACACACAGCTGCACAACGACATCGC
TAAGGAGGAGGAGTCTAAAAACCGCGGCAGAGGGGGAGGGAATTCCGCAC
GGGGTGGAGGCGGTAGCAGCGGCAGCAGCGCCTTGCGCCCTGGCTCCGGG
GACGCTCGGGTGTCGAGCGGTACCAGGTATGTTATATTCAAGTATTCGTG
TTTTTTTTTTTTGCACACATATACACACATATGGTAGACCGGGTTTTTCC
GATATCTGATAACTTGTTACTGGAGTATGATACAAGTACCAATAATACAT
AAATTGAGCTTTCGGGACTGAGCCCTGTTTTTACATTGAACTACTCTGAC
CGAACGATGGTCACTATATCACTATATACTGTACTATATAGGTTTGATTC
CGAGTTCTCTTCTAGCGTTTTTCTCTATATCTGGGGTGCTATTTCTTATT
TCTTGTACCNNNNNNNNNNTGACCACAAGTCGGGTCAGATTAAGCCGATC
GGCTATACGTGTGCAAATCACATAAAAAATCAAATCAAATGTGATTATGT
ACTATGTAAGCATCATACTATTGTTTTTTGAACACATGGGTCATACACCG
GCTTTGCCGGAATCTACAAATAGATTAACCTTTTCGGAGCGATCTGTGTC
TGCTATTATTAGTATTAATATTATTACTACTATATACAGTACCGCGCGCC
CCGTGGTTGAACTGGTTGACCGACAGCCCACGAAGCAGAGGGCCCGTGTT
GAAATCCCGACAGAGTCGTTTTTTTTTTTTTTTTTGTCTCCACCTCCGCC
GCGGAAAAGCGCGAGAGCGTGAGTATGCAAAATTTTCGAGAAATCGGCTA
TAGAGCTGTGGGAGTGCCGAACTAACCTAATGCATTCGTGAAAAAAATCA
AAGGTGAGAACATAACATACCGGGGATACAATAAGAGAGATGGGATGATT
GATCCCTTGTGAACGCAGACGGACCTCGGAAAAAGCAAGTCTATCATATG
TGTGCCAACATACAAACACTACAGTATGTACTACAGTAGGCAACTGTGTA
CTATTATATGATACAGGCAGTACAGGACAAGAGATATAAACCGCAACGCC
GCCCGGAGCGCCTGACCCCGTGATGTTACGGGAAGAGTATCATACTAATT
ATACTGTGCTACTGTTCTTTCCTTGTTCCCTATATTTCCTATGTTTTTTT
TTTGTCGCCTGCTCTAACTTATACTGATGTCCCTGCCGCGTTGCCACTGG
CCGTAGTACAATAAGGACCTGTTGAGAGGCGAGGGAGCATTGTTTGAGAC
CGAGTTCTTCTTCTAGCGTTTTTTTTCCTACATCTGGGATACTCTTTCTT
ACTTCTTGTACTATAGTAAGTACCAGGGACGGTACGGTGTTACAGTAAGT
AGAGCTCTGATTAGTTATTTTTATCCTTGGCTCTTTGCGTGTCTGACCAC
AAGTCGGGTCGGATTACGCCGATCGGCTATGATATACGTGTGCAAATCAA
ATCAATCCATCAGTCAATGGTCCACTTGTTTGTCTCCTTTCGTTTCCTTG
TATTACTATTAATATTGTTCACTCCAGGCCCGACTCGTCCTCGTCGGCAT
CTCGACCAAGCGCACAGGCGGCCCCTAAGGTGAAGGATGAAGACGGGTGG
GAGGTGGTGCCGAAGAAGGGCAAGGGGGCGGCGGGTGGCGACGGGTGGAG
CCAG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig8127:426..7729-

>mRNA_S-dermatodea_contig8127.16326.1 ID=mRNA_S-dermatodea_contig8127.16326.1|Name=mRNA_S-dermatodea_contig8127.16326.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1212bp|location=Sequence derived from alignment at S-dermatodea_contig8127:426..7729- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGATTTGTCGGGGAGCTCTACAAGGTGGAGCTGCTGAAGGAGAAGCA
TGTGCACGTGATGCGATTTGTCGGGGAGCTCTACAAGGTGGAGCTGCTGA
AGGAGAAGCATGTGCACGTGGCTATCCACGACATGTTCGGCAGCGCAGAC
GACCCGGACGAGGAGCGGCTGGAGTGTATGGTGAAGCTTCTGCAGACGTG
CGGGAAGAAGCTGGACCAGACAGGCTCGCCCGACACGGTCAAGGCTATCC
ACGACATGTTCGGCAGCGCAGACGACCCGGACGAGGAGCGGCTGGAGTGT
ATGGTGAAGCTTCTGCAGACGTGCGGGAAGAAGCTGGACCAGACAGGCTC
GCCCGACACGGTCAAGGACATGAAGCGGCTGTTCAAACGCATCTCGAAGC
TCGCGGAGTCCCGTCAGGTCTCCAGCCGCATTCGATTCATGCTCAGGACA
TGAAGCGGCTGTTCAAACGCATCTCGAAGCTCGCGGAGTCCCGTCAGGTC
TCCAGCCGCATTCGATTCATGCTCAGGGACTTGATCGAGCTGAGGAAGAA
CAACTGGGTGCCAAGAAGGGAGGAGGAAAAGGCTAAGACCATGGAACAGG
GACTTGATCGAGCTGAGGAAGAACAACTGGGTGCCAAGAAGGGAGGAGGA
AAAGGCTAAGACCATGGAACAGCTGCACAACGACATCGCTAAGGAGGAGG
AGTCTAAAAACCGCGGCAGAGGGGGAGGGAATTCCGCACGGGGTGGAGGC
GGTAGCAGCGGCAGCAGCGCCTTGCGCCCTGGCTCCGGGGACGCTCGGGT
GTCGAGCGGTACCAGCTGCACAACGACATCGCTAAGGAGGAGGAGTCTAA
AAACCGCGGCAGAGGGGGAGGGAATTCCGCACGGGGTGGAGGCGGTAGCA
GCGGCAGCAGCGCCTTGCGCCCTGGCTCCGGGGACGCTCGGGTGTCGAGC
GGTACCAGGCCCGACTCGTCCTCGTCGGCATCTCGACCAAGCGCACAGGC
GGCCCCTAAGGTGAAGGATGAAGACGGGTGGGAGGTGGTGCCGAAGAAGG
GCAAGGGGGCGGCGGGTGGCGACGGGTGGAGCCAGGCCCGACTCGTCCTC
GTCGGCATCTCGACCAAGCGCACAGGCGGCCCCTAAGGTGAAGGATGAAG
ACGGGTGGGAGGTGGTGCCGAAGAAGGGCAAGGGGGCGGCGGGTGGCGAC
GGGTGGAGCCAG
back to top