mRNA_S-dermatodea_contig8123.16324.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8123.16324.1
Unique NamemRNA_S-dermatodea_contig8123.16324.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8123.16324.1 vs. uniprot
Match: A0A6H5LBD4_9PHAE (EGF-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBD4_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 2.800e-15
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 VRAFKLKGEESTQAVCFNNCSGHGHCVDYACECDIGYDGDDCSFC 135
            V A  L+ +++ Q+VCFNNCSGHG C+DY CECD GYDGDDCSFC
Sbjct:   28 VGASLLRPDDAGQSVCFNNCSGHGRCIDYTCECDAGYDGDDCSFC 72
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BLAST of mRNA_S-dermatodea_contig8123.16324.1 vs. uniprot
Match: D7G1P0_ECTSI (EGF-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1P0_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 3.390e-14
Identity = 30/45 (66.67%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 VRAFKLKGEESTQAVCFNNCSGHGHCVDYACECDIGYDGDDCSFC 135
            V A  L+ +++ Q+VCFNNCSG G C+DY CECD GYDGDDCSFC
Sbjct:   26 VGASLLRPDDAGQSVCFNNCSGRGRCIDYTCECDAGYDGDDCSFC 70
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BLAST of mRNA_S-dermatodea_contig8123.16324.1 vs. uniprot
Match: A0A7S2RV49_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RV49_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 5.280e-10
Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    1 VRAFKLKGEESTQA---VCFNNCSGHGHCVDYACECDIGYDGDDCSF 132
            V +F + G ES  +   VCFN+CSGHGHCVD++CEC +GY GDDC +
Sbjct:   29 VLSFPVGGIESVDSGGSVCFNDCSGHGHCVDFSCECFLGYFGDDCRY 75
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BLAST of mRNA_S-dermatodea_contig8123.16324.1 vs. uniprot
Match: A0A7S1UKK5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UKK5_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 7.860e-8
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:   40 AVCFNNCSGHGHCVDYACECDIGYDGDDC--SFCEYHDELSH 159
            +VCFNNCSGHG C  + CEC+ G+ GDDC  SF +  + L+H
Sbjct:   49 SVCFNNCSGHGSCKAFMCECEKGWHGDDCRYSFADSEEHLTH 90
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BLAST of mRNA_S-dermatodea_contig8123.16324.1 vs. uniprot
Match: A0A7S3HHL5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HHL5_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 5.220e-7
Identity = 20/34 (58.82%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:   25 EESTQAVCFNNCSGHGHCVDYACECDIGYDGDDC 126
            E +  +VCFNNC+GHG C+DY+C C  G+ GDDC
Sbjct:   24 EAADGSVCFNNCNGHGECIDYSCHCFTGFIGDDC 57
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BLAST of mRNA_S-dermatodea_contig8123.16324.1 vs. uniprot
Match: A0A482SA20_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SA20_9ARCH)

HSP 1 Score: 52.0 bits (123), Expect = 2.550e-6
Identity = 20/34 (58.82%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:   25 EESTQAVCFNNCSGHGHCVDYACECDIGYDGDDC 126
            E +  +VCFN+C+GHG C+DY+C C  GY GDDC
Sbjct:   31 EAADGSVCFNDCNGHGECIDYSCFCHPGYLGDDC 64
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8123.16324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5LBD4_9PHAE2.800e-1568.89EGF-like domain-containing protein n=1 Tax=Ectocar... [more]
D7G1P0_ECTSI3.390e-1466.67EGF-like domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S2RV49_9STRA5.280e-1057.45Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S1UKK5_9STRA7.860e-854.76Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S3HHL5_9STRA5.220e-758.82Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A482SA20_9ARCH2.550e-658.82Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8123contigS-dermatodea_contig8123:9078..9239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.3
Seed ortholog evalue1.9e-11
Seed eggNOG ortholog2880.D7G1P0
KEGG koko:K01829,ko:K09580,ko:K10758,ko:K13996
KEGG Pathwayko04141,map04141
EggNOG free text desc.intramolecular oxidoreductase activity, transposing S-S bonds
EggNOG OGsCOG0526@1,KOG0190@2759
EC1.8.3.2,5.3.4.1
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110,ko04131,ko04147
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925322.9425216-CDS-S-dermatodea_contig8123:9077..92391622925322.9425216-CDS-S-dermatodea_contig8123:9077..9239Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8123 9078..9239 +
1694079854.8216138-CDS-S-dermatodea_contig8123:9077..92391694079854.8216138-CDS-S-dermatodea_contig8123:9077..9239Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8123 9078..9239 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8123.16324.1prot_S-dermatodea_contig8123.16324.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8123 9078..9239 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8123.16324.1

>prot_S-dermatodea_contig8123.16324.1 ID=prot_S-dermatodea_contig8123.16324.1|Name=mRNA_S-dermatodea_contig8123.16324.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=54bp
VRAFKLKGEESTQAVCFNNCSGHGHCVDYACECDIGYDGDDCSFCEYHDE
LSH*
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mRNA from alignment at S-dermatodea_contig8123:9078..9239+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8123.16324.1 ID=mRNA_S-dermatodea_contig8123.16324.1|Name=mRNA_S-dermatodea_contig8123.16324.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=162bp|location=Sequence derived from alignment at S-dermatodea_contig8123:9078..9239+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGCGGGCATTCAAGTTGAAAGGAGAGGAAAGCACACAGGCAGTGTGCTT
TAACAACTGCTCGGGACATGGGCACTGTGTCGATTACGCATGCGAGTGCG
ATATCGGATACGATGGCGACGATTGCAGCTTCTGTGAGTATCATGATGAG
CTTTCTCACTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8123:9078..9239+

>mRNA_S-dermatodea_contig8123.16324.1 ID=mRNA_S-dermatodea_contig8123.16324.1|Name=mRNA_S-dermatodea_contig8123.16324.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at S-dermatodea_contig8123:9078..9239+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGCGGGCATTCAAGTTGAAAGGAGAGGAAAGCACACAGGCAGTGTGCTT
TAACAACTGCTCGGGACATGGGCACTGTGTCGATTACGCATGCGAGTGCG
ATATCGGATACGATGGCGACGATTGCAGCTTCTGTGAGTATCATGATGAG
CTTTCTCACTAAGTGCGGGCATTCAAGTTGAAAGGAGAGGAAAGCACACA
GGCAGTGTGCTTTAACAACTGCTCGGGACATGGGCACTGTGTCGATTACG
CATGCGAGTGCGATATCGGATACGATGGCGACGATTGCAGCTTCTGTGAG
TATCATGATGAGCTTTCTCACTAA
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