mRNA_S-dermatodea_contig81141.16312.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig81141.16312.1
Unique NamemRNA_S-dermatodea_contig81141.16312.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig81141.16312.1 vs. uniprot
Match: D8LIP0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIP0_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 5.440e-25
Identity = 50/58 (86.21%), Postives = 55/58 (94.83%), Query Frame = 1 
Query:    1 QDDVTGDGTTTAVLFTGELLRQAERHLSEGLHPRVLTEGFELAKDHTLELLEAFRSVR 174
            QDDVTGDGTTT+VLFTGELLRQAER+L+EGLHPRVLTEGFELAK+H LELL+ FRS R
Sbjct:   85 QDDVTGDGTTTSVLFTGELLRQAERYLTEGLHPRVLTEGFELAKEHALELLDTFRSTR 142
[Close]
BLAST of mRNA_S-dermatodea_contig81141.16312.1 vs. uniprot
Match: A0A7S2MSB4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MSB4_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.490e-20
Identity = 42/55 (76.36%), Postives = 50/55 (90.91%), Query Frame = 1 
Query:    1 QDDVTGDGTTTAVLFTGELLRQAERHLSEGLHPRVLTEGFELAKDHTLELLEAFR 165
            QDD+TGDGTT+AVL  GELLRQAER  +EGLHPRV+TEGFE+AKDHTL+ LE+F+
Sbjct:   92 QDDITGDGTTSAVLLCGELLRQAERVYAEGLHPRVITEGFEMAKDHTLDFLESFK 146
[Close]
BLAST of mRNA_S-dermatodea_contig81141.16312.1 vs. uniprot
Match: A0A0A2V3G4_PARBA (T-complex protein 1 subunit zeta n=1 Tax=Paracoccidioides lutzii (strain ATCC MYA-826 / Pb01) TaxID=502779 RepID=A0A0A2V3G4_PARBA)

HSP 1 Score: 85.9 bits (211), Expect = 1.670e-19
Identity = 37/55 (67.27%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    1 QDDVTGDGTTTAVLFTGELLRQAERHLSEGLHPRVLTEGFELAKDHTLELLEAFR 165
            QDD+TGDGTT+ VL  GELL+QA+RHLSEGLHPRVLT+G+E+AK+  L+ L++F+
Sbjct:   84 QDDITGDGTTSVVLLVGELLKQADRHLSEGLHPRVLTDGYEIAKNEALKFLDSFK 138
[Close]
BLAST of mRNA_S-dermatodea_contig81141.16312.1 vs. uniprot
Match: A0A6V1PFD7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PFD7_HETAK)

HSP 1 Score: 88.6 bits (218), Expect = 4.150e-19
Identity = 38/55 (69.09%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:    1 QDDVTGDGTTTAVLFTGELLRQAERHLSEGLHPRVLTEGFELAKDHTLELLEAFR 165
            QDD+TGDGTT+ ++F GELL+QAERHLSEGLHPRV+TEGF+LA+D  L  L+ F+
Sbjct:   84 QDDITGDGTTSVIIFCGELLKQAERHLSEGLHPRVITEGFDLARDRVLTFLDGFK 138
[Close]
BLAST of mRNA_S-dermatodea_contig81141.16312.1 vs. uniprot
Match: A0A2P4Y5P9_9STRA (T-complex protein 1, zeta subunit (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y5P9_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 5.470e-19
Identity = 38/55 (69.09%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 QDDVTGDGTTTAVLFTGELLRQAERHLSEGLHPRVLTEGFELAKDHTLELLEAFR 165
            QDDVTGDGTT+ VLF GELL+QAER L++GLHPR+L+EGFELAKD  L +L+  +
Sbjct:   83 QDDVTGDGTTSTVLFIGELLKQAERFLADGLHPRILSEGFELAKDEALRVLDTMK 137
[Close]
BLAST of mRNA_S-dermatodea_contig81141.16312.1 vs. uniprot
Match: A0A4P9XMU8_9FUNG (30S ribosomal protein S3, chloroplastic n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XMU8_9FUNG)

HSP 1 Score: 88.2 bits (217), Expect = 5.870e-19
Identity = 41/60 (68.33%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:    1 QDDVTGDGTTTAVLFTGELLRQAERHLSEGLHPRVLTEGFELAKDHTLELLEAFRSVRLV 180
            QDDVTGDGTTT VL  GELL+QAER++SEGLHPRV+TEGFELAK  +L+ L+ FR  + +
Sbjct:  327 QDDVTGDGTTTVVLLVGELLKQAERYVSEGLHPRVVTEGFELAKKESLKFLDEFRQKKTI 386
[Close]
BLAST of mRNA_S-dermatodea_contig81141.16312.1 vs. uniprot
Match: E5R0H2_ARTGP (T-complex protein 1 subunit zeta n=22 Tax=Arthrodermataceae TaxID=34384 RepID=E5R0H2_ARTGP)

HSP 1 Score: 87.8 bits (216), Expect = 7.760e-19
Identity = 39/58 (67.24%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:    1 QDDVTGDGTTTAVLFTGELLRQAERHLSEGLHPRVLTEGFELAKDHTLELLEAFRSVR 174
            QDD+TGDGTT+ VL  GELL+QA RH+SEGLHPRV+T+G+ELAKD  L+ LE+F+  R
Sbjct:   84 QDDITGDGTTSVVLLVGELLKQANRHISEGLHPRVITDGYELAKDEALKFLESFKLKR 141
[Close]
BLAST of mRNA_S-dermatodea_contig81141.16312.1 vs. uniprot
Match: A0A7R9YD60_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YD60_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 7.830e-19
Identity = 38/55 (69.09%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    1 QDDVTGDGTTTAVLFTGELLRQAERHLSEGLHPRVLTEGFELAKDHTLELLEAFR 165
            QDD+ GDGTT+AVL TGELL+QAER+L+EGLHPRV+ +GF+ A+DH L+LLE F+
Sbjct:   85 QDDIVGDGTTSAVLLTGELLKQAERYLTEGLHPRVIADGFDAARDHVLDLLEGFK 139
[Close]
BLAST of mRNA_S-dermatodea_contig81141.16312.1 vs. uniprot
Match: A0A0L0SC99_ALLM3 (Uncharacterized protein n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0SC99_ALLM3)

HSP 1 Score: 86.7 bits (213), Expect = 7.940e-19
Identity = 39/60 (65.00%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:    1 QDDVTGDGTTTAVLFTGELLRQAERHLSEGLHPRVLTEGFELAKDHTLELLEAFRSVRLV 180
            QD++TGDGTT+ VL  GELL+QAER++SEGLHPRVLTEGFELAK  +L+ LE+F+  + +
Sbjct:   93 QDEITGDGTTSIVLLVGELLKQAERYISEGLHPRVLTEGFELAKKESLQFLESFKLTKKI 152
[Close]
BLAST of mRNA_S-dermatodea_contig81141.16312.1 vs. uniprot
Match: A0A0L0RZ43_ALLM3 (T-complex protein 1, zeta subunit n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0RZ43_ALLM3)

HSP 1 Score: 87.0 bits (214), Expect = 1.440e-18
Identity = 40/60 (66.67%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:    1 QDDVTGDGTTTAVLFTGELLRQAERHLSEGLHPRVLTEGFELAKDHTLELLEAFRSVRLV 180
            QD++TGDGTT+ VL  GELL+QAER++SEGLHPRVLTEGFELAK  +L+ LE+F+  + V
Sbjct:   79 QDEITGDGTTSIVLLVGELLKQAERYISEGLHPRVLTEGFELAKKESLQFLESFKLTKKV 138
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig81141.16312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIP0_ECTSI5.440e-2586.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2MSB4_9STRA2.490e-2076.36Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A0A2V3G4_PARBA1.670e-1967.27T-complex protein 1 subunit zeta n=1 Tax=Paracocci... [more]
A0A6V1PFD7_HETAK4.150e-1969.09Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A2P4Y5P9_9STRA5.470e-1969.09T-complex protein 1, zeta subunit (Fragment) n=1 T... [more]
A0A4P9XMU8_9FUNG5.870e-1968.3330S ribosomal protein S3, chloroplastic n=1 Tax=Th... [more]
E5R0H2_ARTGP7.760e-1967.24T-complex protein 1 subunit zeta n=22 Tax=Arthrode... [more]
A0A7R9YD60_9STRA7.830e-1969.09Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A0L0SC99_ALLM37.940e-1965.00Uncharacterized protein n=1 Tax=Allomyces macrogyn... [more]
A0A0L0RZ43_ALLM31.440e-1866.67T-complex protein 1, zeta subunit n=1 Tax=Allomyce... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig81141contigS-dermatodea_contig81141:360..539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.1
Seed ortholog evalue3e-21
Seed eggNOG ortholog2880.D8LIP0
Preferred nameCCT6
KEGG koko:K09498,ko:K19401
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005832,GO:0005856,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0010035,GO:0010038,GO:0010043,GO:0016020,GO:0032991,GO:0042221,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046686,GO:0050896,GO:0051082,GO:0061077,GO:0101031
EggNOG free text desc.unfolded protein binding
EggNOG OGsCOG0459@1,KOG0359@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko03110,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size180
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925321.9976964-CDS-S-dermatodea_contig81141:359..5391622925321.9976964-CDS-S-dermatodea_contig81141:359..539Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig81141 360..539 -
1694079854.1410358-CDS-S-dermatodea_contig81141:359..5391694079854.1410358-CDS-S-dermatodea_contig81141:359..539Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig81141 360..539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig81141.16312.1prot_S-dermatodea_contig81141.16312.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig81141 360..539 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig81141.16312.1

>prot_S-dermatodea_contig81141.16312.1 ID=prot_S-dermatodea_contig81141.16312.1|Name=mRNA_S-dermatodea_contig81141.16312.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=60bp
QDDVTGDGTTTAVLFTGELLRQAERHLSEGLHPRVLTEGFELAKDHTLEL
LEAFRSVRLV
back to top

mRNA from alignment at S-dermatodea_contig81141:360..539-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig81141.16312.1 ID=mRNA_S-dermatodea_contig81141.16312.1|Name=mRNA_S-dermatodea_contig81141.16312.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=180bp|location=Sequence derived from alignment at S-dermatodea_contig81141:360..539- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGATGACGTCACGGGCGACGGCACGACCACCGCGGTTCTGTTCACCGG
AGAGCTGCTGCGGCAGGCGGAGCGACACCTCTCGGAGGGCCTACACCCCC
GCGTGCTGACGGAAGGGTTCGAGCTAGCCAAGGATCACACGCTGGAACTC
CTGGAGGCGTTCCGATCGGTCAGGTTAGTC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig81141:360..539-

>mRNA_S-dermatodea_contig81141.16312.1 ID=mRNA_S-dermatodea_contig81141.16312.1|Name=mRNA_S-dermatodea_contig81141.16312.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at S-dermatodea_contig81141:360..539- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGATGACGTCACGGGCGACGGCACGACCACCGCGGTTCTGTTCACCGG
AGAGCTGCTGCGGCAGGCGGAGCGACACCTCTCGGAGGGCCTACACCCCC
GCGTGCTGACGGAAGGGTTCGAGCTAGCCAAGGATCACACGCTGGAACTC
CTGGAGGCGTTCCGATCGGTCAGGTTAGTCCAGGATGACGTCACGGGCGA
CGGCACGACCACCGCGGTTCTGTTCACCGGAGAGCTGCTGCGGCAGGCGG
AGCGACACCTCTCGGAGGGCCTACACCCCCGCGTGCTGACGGAAGGGTTC
GAGCTAGCCAAGGATCACACGCTGGAACTCCTGGAGGCGTTCCGATCGGT
CAGGTTAGTC
back to top