mRNA_S-dermatodea_contig811.16306.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig811.16306.1
Unique NamemRNA_S-dermatodea_contig811.16306.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig811.16306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig811contigS-dermatodea_contig811:9493..10326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size342
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925321.6065881-CDS-S-dermatodea_contig811:9492..95371622925321.6065881-CDS-S-dermatodea_contig811:9492..9537Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig811 9493..9537 +
1694079853.8976521-CDS-S-dermatodea_contig811:9492..95371694079853.8976521-CDS-S-dermatodea_contig811:9492..9537Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig811 9493..9537 +
1622925321.619788-CDS-S-dermatodea_contig811:10030..103241622925321.619788-CDS-S-dermatodea_contig811:10030..10324Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig811 10031..10324 +
1694079853.9141955-CDS-S-dermatodea_contig811:10030..103241694079853.9141955-CDS-S-dermatodea_contig811:10030..10324Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig811 10031..10324 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig811.16306.1prot_S-dermatodea_contig811.16306.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig811 9493..10324 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig811.16306.1

>prot_S-dermatodea_contig811.16306.1 ID=prot_S-dermatodea_contig811.16306.1|Name=mRNA_S-dermatodea_contig811.16306.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=113bp
KCCIEEASLEPSPTEAASEEKLDVPPGTLCVQWIWGDTHNSEGTETGHGS
NDRGVFGEDGQGLYPSRTGFILFGSVAASDEDVNLKASSGKCEGAPSIKV
ASVPVHKAEELKR
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mRNA from alignment at S-dermatodea_contig811:9493..10326+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig811.16306.1 ID=mRNA_S-dermatodea_contig811.16306.1|Name=mRNA_S-dermatodea_contig811.16306.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=834bp|location=Sequence derived from alignment at S-dermatodea_contig811:9493..10326+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGTGCTGCATAGAGGAGGCGTCACTTGAACCTTCGCCGACCGAGGTAAC
CCAAAAATTATGCCTTGATGAAGAATGAACACATGAAGTTTGTATAGCGC
TAAGGTTCGCTGTGAAGAAACGGAAACTGGCCCTGCAGGACGTCAAGTTT
CGCTGTGAAGGTCCGCAGACTTGACTGCTAATGGCCGCCATCGAGGGCTG
TATGTAGTCTAGTGGGTTTGATTACACGAGTTGTCGAGAGGGCCTGCCAT
TTTTACGTCCCTTGATGAGAGGAACAAGCGATTATCAAGAGTTGGGTTGT
TTCCCTGTGAATAGGCAATACGGTGTTGGCGTGCACAATAACGGTTTCGA
TGGTCGCGTTTCCTTCCTTATGTGTTCCGACCGACCTTGAACGCTGTCTA
GGTTTGTCACACCCTGGGCAACTGATAGGCTTATTGTGAGGTCGAAGACC
CGGCGCCATGACTTCGAACTCTTTATCCCCGTGTAAGGCTCACCCCGCCC
CCCTCCCCTTATATTTCACCGGCAAAACACGGGCCCAGGCGGCGTCTGAG
GAAAAATTGGACGTTCCTCCCGGAACGCTTTGCGTGCAGTGGATTTGGGG
CGATACGCATAACTCGGAGGGTACGGAGACAGGCCATGGCAGCAATGATC
GGGGTGTCTTCGGCGAGGACGGCCAGGGGCTATACCCATCACGTACAGGC
TTTATACTATTTGGGTCGGTGGCTGCGAGCGACGAAGACGTGAACCTCAA
AGCTAGCAGCGGTAAATGCGAAGGCGCCCCGTCGATAAAGGTGGCCAGCG
TCCCTGTGCACAAGGCGGAGGAACTGAAACGGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig811:9493..10326+

>mRNA_S-dermatodea_contig811.16306.1 ID=mRNA_S-dermatodea_contig811.16306.1|Name=mRNA_S-dermatodea_contig811.16306.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at S-dermatodea_contig811:9493..10326+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGTGCTGCATAGAGGAGGCGTCACTTGAACCTTCGCCGACCGAGAAGTG
CTGCATAGAGGAGGCGTCACTTGAACCTTCGCCGACCGAGGCGGCGTCTG
AGGAAAAATTGGACGTTCCTCCCGGAACGCTTTGCGTGCAGTGGATTTGG
GGCGATACGCATAACTCGGAGGGTACGGAGACAGGCCATGGCAGCAATGA
TCGGGGTGTCTTCGGCGAGGACGGCCAGGGGCTATACCCATCACGTACAG
GCTTTATACTATTTGGGTCGGTGGCTGCGAGCGACGAAGACGTGAACCTC
AAAGCTAGCAGCGGTAAATGCGAAGGCGCCCCGTCGATAAAGGTGGCCAG
CGTCCCTGTGCACAAGGCGGAGGAACTGAAACGGGCGGCGTCTGAGGAAA
AATTGGACGTTCCTCCCGGAACGCTTTGCGTGCAGTGGATTTGGGGCGAT
ACGCATAACTCGGAGGGTACGGAGACAGGCCATGGCAGCAATGATCGGGG
TGTCTTCGGCGAGGACGGCCAGGGGCTATACCCATCACGTACAGGCTTTA
TACTATTTGGGTCGGTGGCTGCGAGCGACGAAGACGTGAACCTCAAAGCT
AGCAGCGGTAAATGCGAAGGCGCCCCGTCGATAAAGGTGGCCAGCGTCCC
TGTGCACAAGGCGGAGGAACTGAAACGG
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