mRNA_S-dermatodea_contig810.16293.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig810.16293.1
Unique NamemRNA_S-dermatodea_contig810.16293.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig810.16293.1 vs. uniprot
Match: D7G989_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G989_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 3.490e-41
Identity = 67/77 (87.01%), Postives = 73/77 (94.81%), Query Frame = 1 
Query:    1 MNTEATVDNNFELFETQRVEDIKDILEEFLRCELYYHCRALEMLAPALVHIGGVEAESARESMQEDIESMNKQLRYT 231
            MNTEATVDNNFELFE QRVE+IKDILEEFLRCELYYHCRALE+L PAL+HIGGV+ ESARE+M+EDIE MNKQLRYT
Sbjct:    1 MNTEATVDNNFELFEAQRVEEIKDILEEFLRCELYYHCRALEVLGPALMHIGGVDPESARENMREDIEGMNKQLRYT 77
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BLAST of mRNA_S-dermatodea_contig810.16293.1 vs. uniprot
Match: A0A836CPR2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPR2_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 4.510e-19
Identity = 46/106 (43.40%), Postives = 62/106 (58.49%), Query Frame = 1 
Query:    4 NTEATVDNNFELFETQRVEDIKD------------------------------ILEEFLRCELYYHCRALEMLAPALVHIGGVEAESARESMQEDIESMNKQLRYT 231
            NTE  VDNN ELFE QRVED+K+                              IL+EF+RCE+YYHCRALEMLAPAL H+ GV  + A ++++ ++ S+N +L Y+
Sbjct:  153 NTEKVVDNNMELFEAQRVEDVKENIAVXXXXXXXXXXXXXXXXXXXXRMSRREILQEFVRCEMYYHCRALEMLAPALQHLSGVHGDVASDNIRHEMASLNTRLNYS 258
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BLAST of mRNA_S-dermatodea_contig810.16293.1 vs. uniprot
Match: W7TTF8_9STRA (FAM92 protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TTF8_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 5.730e-10
Identity = 30/69 (43.48%), Postives = 46/69 (66.67%), Query Frame = 1 
Query:    7 TEATVDNNFELFETQRVEDIKDILEEFLRCELYYHCRALEMLAPALVHIGGVEAESARESMQEDIESMN 213
            T+  VD+NF  FE  RV ++K +LEE LR E+ YHCRALE+L P  V +  ++ + A  SM ++++ +N
Sbjct:  160 TDEVVDSNFRCFEKSRVLEMKAMLEETLRAEMLYHCRALEILEPLCVSMRRLDPDEAMASMTQELDELN 228
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BLAST of mRNA_S-dermatodea_contig810.16293.1 vs. uniprot
Match: A0A4D9D8D0_9STRA (Methionine aminopeptidase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8D0_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.060e-9
Identity = 30/69 (43.48%), Postives = 46/69 (66.67%), Query Frame = 1 
Query:    7 TEATVDNNFELFETQRVEDIKDILEEFLRCELYYHCRALEMLAPALVHIGGVEAESARESMQEDIESMN 213
            T+  VD+NF  FE  RV ++K +LEE LR E+ YHCRALE+L P  V +  ++ + A  SM ++++ +N
Sbjct:  407 TDEVVDSNFRCFEKSRVLEMKAMLEETLRAEMLYHCRALEILEPLCVSMRRLDPDEAMASMTQELDELN 475
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig810.16293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G989_ECTSI3.490e-4187.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CPR2_9STRA4.510e-1943.40Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TTF8_9STRA5.730e-1043.48FAM92 protein n=2 Tax=Nannochloropsis gaditana Tax... [more]
A0A4D9D8D0_9STRA1.060e-943.48Methionine aminopeptidase n=1 Tax=Nannochloropsis ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig810contigS-dermatodea_contig810:19252..20676 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFAM92 protein
Ec32 orthologEc-00_011340.1
Exons3
Model size234
Cds size234
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig810.16293.1prot_S-dermatodea_contig810.16293.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig810 19252..20676 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925320.619124-CDS-S-dermatodea_contig810:19251..193021622925320.619124-CDS-S-dermatodea_contig810:19251..19302Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig810 19252..19302 -
1694079853.2280705-CDS-S-dermatodea_contig810:19251..193021694079853.2280705-CDS-S-dermatodea_contig810:19251..19302Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig810 19252..19302 -
1622925320.62913-CDS-S-dermatodea_contig810:19738..198521622925320.62913-CDS-S-dermatodea_contig810:19738..19852Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig810 19739..19852 -
1694079853.2370276-CDS-S-dermatodea_contig810:19738..198521694079853.2370276-CDS-S-dermatodea_contig810:19738..19852Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig810 19739..19852 -
1622925320.6388342-CDS-S-dermatodea_contig810:20607..206761622925320.6388342-CDS-S-dermatodea_contig810:20607..20676Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig810 20608..20676 -
1694079853.2459424-CDS-S-dermatodea_contig810:20607..206761694079853.2459424-CDS-S-dermatodea_contig810:20607..20676Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig810 20608..20676 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig810.16293.1

>prot_S-dermatodea_contig810.16293.1 ID=prot_S-dermatodea_contig810.16293.1|Name=mRNA_S-dermatodea_contig810.16293.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=78bp
MNTEATVDNNFELFETQRVEDIKDILEEFLRCELYYHCRALEMLAPALVH
IGGVEAESARESMQEDIESMNKQLRYT*
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mRNA from alignment at S-dermatodea_contig810:19252..20676-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig810.16293.1 ID=mRNA_S-dermatodea_contig810.16293.1|Name=mRNA_S-dermatodea_contig810.16293.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1425bp|location=Sequence derived from alignment at S-dermatodea_contig810:19252..20676- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAACACGGAGGCGACAGTGGACAACAATTTTGAGCTGTTCGAGACGCA
GCGGGTAGAGGATATCAAGGTATTGTACTCACAATGCAGACAATTGCAAT
GCGTGGCATTCCGACGATAGTTGCAAAAAGTACGATTGCTATATACGGAG
CGCGATAATAATATGCCAGTGCGGTGCTAGCCGCAAGCGAGGTCTTACTA
AGAGGTGATGAGGGGTAGCGTACCATGTCCATGGCCGAAATAACTGCTTT
CAGATTTCTGGTGTACGCCATTGCAGCTGCTTGGGGCTCGTGGTAGTGCT
AGCATGGGTCGATCGTCGTTCTGTAAACTGATGGCTCGACAGAGTGCGAC
GAACGCCGGTGAAGAAATGTTCTGAATACGCACAACCCTAGACTGAAGAA
CCTAAGAAAAAACTGGTTGGGTTGATATATCTTGCTTGAACGTTGGTGTT
CCATTGCTGTTCGATTCAAACCCCGGCGATTTCCACCCAGAACGCAGGCG
TTTTGGCAGCGAAGCAAACACCTAGTGCTGAGCAAGCCCATGCAACCCGC
CGCGCCGTGGCCGAAGCGACTGTGTGGCTGGTAAATCGGAAATTATGCGT
AGCTTGTGCGCTCGATAGCGAGGCACGGCCCCTGCATCAGCATTCGGTGA
CCACGAGGACGATGCGATAGTATCCACGGCTTGTTGAGGTGTTGAGCACC
GCGCAAAATGAACCACCTCTGCAACTGCAGGCTCGACGCATATAGCACGA
AGCTCACCGAGGACCTCGCCTGCGTGAGATGTACTTGTCAACAATCTTCC
CTGTCGACTCGAACCTTTGCCCAGGATATTCTGGAGGAATTTCTTCGCTG
TGAGCTCTACTACCACTGCCGGGCGCTGGAGATGTTGGCACCGGCGTTGG
TACACATAGGGGGGGTGGAAGCGGAATCTGCTCGCGAGGTTTGTGACTTT
CATGCTGACGTGTTGATCAGCCCACCCAGGTGCATTCTGCTCCGTATAGC
GTAAATACACATGCCGCTTCGATGCACGATGGGAAGGGCAAAACAATCTC
AACGACAGCCACACAACGCATGTCTCCATTACAAAATTAATGTTGCACCG
ATTCTTCAGGGTGGCGAGGCGACTCGAGTTTTATAAAGTGCTGTAGCCTT
CCACGCTCCAAAGGCCGTAGGAAAGCTGCCAGCGACAAACAGTTGCCCTG
TTTATTGTAGCTAAATATTGAACGTGCGTTCACCGCGTATTGCTCAGATT
CCTGTACTTACTCGGTACGACGGCAGAGGTGGCAGGTATGCGATCCCTTT
ATATTGCTGTGACTTGTCATTGGTGAACTGACAAGTGAGGTTTCGACCTC
TCTCGTTTCCTGCGTGCTTTGCAGAGCATGCAAGAGGACATCGAGAGTAT
GAACAAGCAGCTTCGCTATACATGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig810:19252..20676-

>mRNA_S-dermatodea_contig810.16293.1 ID=mRNA_S-dermatodea_contig810.16293.1|Name=mRNA_S-dermatodea_contig810.16293.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at S-dermatodea_contig810:19252..20676- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAACACGGAGGCGACAGTGGACAACAATTTTGAGCTGTTCGAGACGCA
GCGGGTAGAGGATATCAAGATGAACACGGAGGCGACAGTGGACAACAATT
TTGAGCTGTTCGAGACGCAGCGGGTAGAGGATATCAAGGATATTCTGGAG
GAATTTCTTCGCTGTGAGCTCTACTACCACTGCCGGGCGCTGGAGATGTT
GGCACCGGCGTTGGTACACATAGGGGGGGTGGAAGCGGAATCTGCTCGCG
AGGATATTCTGGAGGAATTTCTTCGCTGTGAGCTCTACTACCACTGCCGG
GCGCTGGAGATGTTGGCACCGGCGTTGGTACACATAGGGGGGGTGGAAGC
GGAATCTGCTCGCGAGAGCATGCAAGAGGACATCGAGAGTATGAACAAGC
AGCTTCGCTATACATGAAGCATGCAAGAGGACATCGAGAGTATGAACAAG
CAGCTTCGCTATACATGA
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