mRNA_S-dermatodea_contig81.16290.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig81.16290.1
Unique NamemRNA_S-dermatodea_contig81.16290.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig81.16290.1 vs. uniprot
Match: A0A7S2CUC3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CUC3_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 8.040e-9
Identity = 34/68 (50.00%), Postives = 45/68 (66.18%), Query Frame = -1 
Query:    3 DEGFCDKGDVGSGEKLLYLLQKWDVRHRVLLVTRID------GGFAMGELLGVRRYRV--GRIVSELE 182
            +EG  D GD+G+GEKLL LLQ+WDVR+ +++VTR D      G F   E LG++RYR+  GR    LE
Sbjct:   88 EEGHDDHGDLGAGEKLLGLLQRWDVRNVIIVVTRHDSKSLHGGSFLAPEKLGIQRYRIVLGRAKHVLE 155
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BLAST of mRNA_S-dermatodea_contig81.16290.1 vs. uniprot
Match: A0A067BN17_SAPPC (UPF0029 domain-containing protein (Fragment) n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BN17_SAPPC)

HSP 1 Score: 56.6 bits (135), Expect = 7.860e-7
Identity = 26/51 (50.98%), Postives = 38/51 (74.51%), Query Frame = -1 
Query:   27 EGFCDKGDVGSGEKLLYLLQKWDVRHRVLLVTRIDGGFAMGELLGVRRYRV 179
            EG  D G  G+G+KLLY+LQ+WDV + VL+V+RID  ++ G+LLG   Y++
Sbjct:   79 EGMHDGGMFGAGDKLLYVLQRWDVHNVVLVVSRIDASYS-GQLLGANTYKL 128
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BLAST of mRNA_S-dermatodea_contig81.16290.1 vs. uniprot
Match: A0A067CAR7_SAPPC (UPF0029 domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CAR7_SAPPC)

HSP 1 Score: 56.6 bits (135), Expect = 1.240e-6
Identity = 26/51 (50.98%), Postives = 38/51 (74.51%), Query Frame = -1 
Query:   27 EGFCDKGDVGSGEKLLYLLQKWDVRHRVLLVTRIDGGFAMGELLGVRRYRV 179
            EG  D G  G+G+KLLY+LQ+WDV + VL+V+RID  ++ G+LLG   Y++
Sbjct:   79 EGMHDGGMFGAGDKLLYVLQRWDVHNVVLVVSRIDASYS-GQLLGANTYKL 128
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BLAST of mRNA_S-dermatodea_contig81.16290.1 vs. uniprot
Match: T0PVN6_SAPDV (UPF0029 domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0PVN6_SAPDV)

HSP 1 Score: 55.8 bits (133), Expect = 2.300e-6
Identity = 26/51 (50.98%), Postives = 38/51 (74.51%), Query Frame = -1 
Query:   27 EGFCDKGDVGSGEKLLYLLQKWDVRHRVLLVTRIDGGFAMGELLGVRRYRV 179
            EG  D G  G+G+KLLY+LQ+WDV + VL+V+RID  ++ G+LLG   Y++
Sbjct:   79 EGAHDGGMFGAGDKLLYVLQRWDVHNVVLVVSRIDASYS-GQLLGANTYKL 128
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig81.16290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S2CUC3_9STRA8.040e-950.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A067BN17_SAPPC7.860e-750.98UPF0029 domain-containing protein (Fragment) n=1 T... [more]
A0A067CAR7_SAPPC1.240e-650.98UPF0029 domain-containing protein n=1 Tax=Saproleg... [more]
T0PVN6_SAPDV2.300e-650.98UPF0029 domain-containing protein n=1 Tax=Saproleg... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig81contigS-dermatodea_contig81:4726..5150 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size425
Cds size324
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925320.0136023-UTR-S-dermatodea_contig81:4725..48261622925320.0136023-UTR-S-dermatodea_contig81:4725..4826Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig81 4726..4826 +
1694079852.7604413-UTR-S-dermatodea_contig81:4725..48261694079852.7604413-UTR-S-dermatodea_contig81:4725..4826Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig81 4726..4826 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925320.0279598-CDS-S-dermatodea_contig81:4826..51501622925320.0279598-CDS-S-dermatodea_contig81:4826..5150Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig81 4827..5150 +
1694079852.7692885-CDS-S-dermatodea_contig81:4826..51501694079852.7692885-CDS-S-dermatodea_contig81:4826..5150Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig81 4827..5150 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig81.16290.1prot_S-dermatodea_contig81.16290.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig81 4827..5150 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig81.16290.1

>prot_S-dermatodea_contig81.16290.1 ID=prot_S-dermatodea_contig81.16290.1|Name=mRNA_S-dermatodea_contig81.16290.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=108bp
MPNIPFLKQVEQLFTGPNVPFVAKALIAAVASRAIAIAIAIARVDCLGKI
FSAVHPSRLRFISFDARQSVSERAHVSRKPDVTFHLGGYGFAYGLRFGEG
VNPGASY*
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mRNA from alignment at S-dermatodea_contig81:4726..5150+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig81.16290.1 ID=mRNA_S-dermatodea_contig81.16290.1|Name=mRNA_S-dermatodea_contig81.16290.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=425bp|location=Sequence derived from alignment at S-dermatodea_contig81:4726..5150+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTTTCGAGTTCACTTACGATCCGGCCTACCCTGTACCTGCGGACCCCGAG
CAGCTCCCCCATCGCAAACCCTCCATCGATGCGGGTTACGAGTAGGACCC
GATGCCTAACATCCCATTTCTGAAGCAGGTAGAGCAACTTTTCACCGGAC
CCAACGTCCCCTTTGTCGCAAAAGCCCTCATCGCGGCCGTTGCCAGCCGA
GCCATTGCCATTGCCATTGCCATTGCCAGGGTCGACTGCCTCGGGAAGAT
TTTTTCCGCTGTCCACCCCTCCCGCTTGCGATTCATCTCCTTCGACGCAC
GCCAATCGGTAAGCGAACGGGCACACGTGTCCCGCAAACCCGACGTCACG
TTCCATCTCGGAGGATATGGCTTCGCTTATGGCCTTCGCTTCGGCGAAGG
TGTTAATCCTGGCGCGTCATATTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig81:4726..5150+

>mRNA_S-dermatodea_contig81.16290.1 ID=mRNA_S-dermatodea_contig81.16290.1|Name=mRNA_S-dermatodea_contig81.16290.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at S-dermatodea_contig81:4726..5150+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCTAACATCCCATTTCTGAAGCAGGTAGAGCAACTTTTCACCGGACC
CAACGTCCCCTTTGTCGCAAAAGCCCTCATCGCGGCCGTTGCCAGCCGAG
CCATTGCCATTGCCATTGCCATTGCCAGGGTCGACTGCCTCGGGAAGATT
TTTTCCGCTGTCCACCCCTCCCGCTTGCGATTCATCTCCTTCGACGCACG
CCAATCGGTAAGCGAACGGGCACACGTGTCCCGCAAACCCGACGTCACGT
TCCATCTCGGAGGATATGGCTTCGCTTATGGCCTTCGCTTCGGCGAAGGT
GTTAATCCTGGCGCGTCATATTAAATGCCTAACATCCCATTTCTGAAGCA
GGTAGAGCAACTTTTCACCGGACCCAACGTCCCCTTTGTCGCAAAAGCCC
TCATCGCGGCCGTTGCCAGCCGAGCCATTGCCATTGCCATTGCCATTGCC
AGGGTCGACTGCCTCGGGAAGATTTTTTCCGCTGTCCACCCCTCCCGCTT
GCGATTCATCTCCTTCGACGCACGCCAATCGGTAAGCGAACGGGCACACG
TGTCCCGCAAACCCGACGTCACGTTCCATCTCGGAGGATATGGCTTCGCT
TATGGCCTTCGCTTCGGCGAAGGTGTTAATCCTGGCGCGTCATATTAA
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