mRNA_S-dermatodea_contig8094.16286.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8094.16286.1
Unique NamemRNA_S-dermatodea_contig8094.16286.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig8094.16286.1 vs. uniprot
Match: A0A6H5J9P9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9P9_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 1.440e-43
Identity = 91/153 (59.48%), Postives = 115/153 (75.16%), Query Frame = 2
Query:   14 MPPIPHALHLSRLGRNDGAWENGVLAAAMGAQRVTFSAGDPTSSSVPKNRSAGKEQSSNSNMDEETRKSIGESDEKAKKSMQTVKLALAGNLVITVAKFLAYMHSGSSAMSSEAMHSLVDAANQLLLVVGLRSAATAPDKQHQYGYGKAVYFW 472
            +P +P  + L+       A   G +AA   AQ++  S+ +       K+++    + + + MD ETR+SIGE D+K+KKSM+TVKLALAGNLVIT+ KFLAYMHSGSSAMSSEAMHSLVD+ANQLLLVVGLRSA+TAPDK+HQYGYGK+VYFW
Sbjct:   69 IPAVPRPVGLAGGDGKRSALGRGAMAAIARAQQMALSSDEGAGGLGSKSKA----EQAQAGMDAETRRSIGEGDKKSKKSMKTVKLALAGNLVITLGKFLAYMHSGSSAMSSEAMHSLVDSANQLLLVVGLRSASTAPDKRHQYGYGKSVYFW 217          
BLAST of mRNA_S-dermatodea_contig8094.16286.1 vs. uniprot
Match: D7G7R8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7R8_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 4.990e-37
Identity = 83/132 (62.88%), Postives = 94/132 (71.21%), Query Frame = 2
Query:  164 SAGKEQSSNSNMDEETRKSIGESDEKAKKSMQTVK-----------------------------LALAGNLVITVAKFLAYMHSGSSAMSSEAMHSLVDAANQLLLVVGLRSAATAPDKQHQYGYGKAVYFW 472
            S  K + S + MD ETR+SIGE D+K+KKSM+TVK                             LALAGNLVIT+ KFLAYMHSGSSAMSSEAMHSLVD+ANQLLLVVGLRSA+TAPDK+HQYGYGK+VYFW
Sbjct:   23 SRSKAEQSQAGMDAETRRSIGEGDKKSKKSMKTVKPLTECCSSDDLSLARRRTCFLGRAWHRLQLALAGNLVITLGKFLAYMHSGSSAMSSEAMHSLVDSANQLLLVVGLRSASTAPDKRHQYGYGKSVYFW 154          
BLAST of mRNA_S-dermatodea_contig8094.16286.1 vs. uniprot
Match: A0A7S4D571_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D571_HETAK)

HSP 1 Score: 111 bits (277), Expect = 2.960e-28
Identity = 59/97 (60.82%), Postives = 74/97 (76.29%), Query Frame = 2
Query:  182 SSNSNMDEETRKSIGESDEKAKKSMQTVKLALAGNLVITVAKFLAYMHSGSSAMSSEAMHSLVDAANQLLLVVGLRSAATAPDKQHQYGYGKAVYFW 472
            SS S+ DE   ++I  +  KA  SM+ VKLA+AGNLVIT AKF+++ +SGSSAM SEA+HSLVD  NQ LL++GL +A   PD +HQYGYGKAVYFW
Sbjct:   42 SSTSDADETYERAIKNASAKANSSMKGVKLAMAGNLVITTAKFMSWKYSGSSAMLSEAIHSLVDTGNQGLLLIGLNAARNIPDNRHQYGYGKAVYFW 138          
BLAST of mRNA_S-dermatodea_contig8094.16286.1 vs. uniprot
Match: W7TG20_9STRA (Zinc transporter 9 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TG20_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.240e-26
Identity = 53/75 (70.67%), Postives = 67/75 (89.33%), Query Frame = 2
Query:  248 KSMQTVKLALAGNLVITVAKFLAYMHSGSSAMSSEAMHSLVDAANQLLLVVGLRSAATAPDKQHQYGYGKAVYFW 472
            KS   VKLAL GN+VIT+AKFLA++HSGSSAM SE++HSLVD+ NQ LL++G+R+AATAPD+ HQYGYGK++YFW
Sbjct:  147 KSEHVVKLALGGNVVITIAKFLAWLHSGSSAMLSESIHSLVDSGNQTLLLIGIRAAATAPDRHHQYGYGKSIYFW 221          
BLAST of mRNA_S-dermatodea_contig8094.16286.1 vs. uniprot
Match: A0A1W0A8Z9_9STRA (Zinc transporter n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A8Z9_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 3.620e-20
Identity = 46/67 (68.66%), Postives = 55/67 (82.09%), Query Frame = 2
Query:  272 ALAGNLVITVAKFLAYMHSGSSAMSSEAMHSLVDAANQLLLVVGLRSAATAPDKQHQYGYGKAVYFW 472
            A+AGN  ITV KFLAY+ +GSSAM SEA+HSLVD  NQ LL++GLR A+  PDK+HQYGYG+A YFW
Sbjct:    5 AMAGNTAITVLKFLAYLKTGSSAMLSEAIHSLVDTGNQGLLILGLRQASFQPDKKHQYGYGRAAYFW 71          
BLAST of mRNA_S-dermatodea_contig8094.16286.1 vs. uniprot
Match: K0SKH5_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SKH5_THAOC)

HSP 1 Score: 94.4 bits (233), Expect = 1.610e-19
Identity = 48/80 (60.00%), Postives = 59/80 (73.75%), Query Frame = 2
Query:  233 DEKAKKSMQTVKLALAGNLVITVAKFLAYMHSGSSAMSSEAMHSLVDAANQLLLVVGLRSAATAPDKQHQYGYGKAVYFW 472
            DE    +M+ V+ ALAGN VI  AK LA + SGSSAM SE +HS+VD  NQ LL+VGL ++  APD+ HQYGYGKA+YFW
Sbjct:  236 DESRGAAMKNVQRALAGNFVIASAKLLAALSSGSSAMMSEFVHSVVDCGNQALLLVGLSASQNAPDRNHQYGYGKAIYFW 315          
BLAST of mRNA_S-dermatodea_contig8094.16286.1 vs. uniprot
Match: F0WBY3_9STRA (Zinc transporter putative n=2 Tax=Albugo TaxID=65356 RepID=F0WBY3_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.750e-19
Identity = 44/67 (65.67%), Postives = 54/67 (80.60%), Query Frame = 2
Query:  272 ALAGNLVITVAKFLAYMHSGSSAMSSEAMHSLVDAANQLLLVVGLRSAATAPDKQHQYGYGKAVYFW 472
            A+AGN  IT+ K LA++ +GSSAM SEA+HSLVD  NQ +LV+GLR AA  PDK+HQYGYG+A YFW
Sbjct:    3 AMAGNTAITILKTLAWLKTGSSAMLSEAIHSLVDTGNQAILVLGLRQAAGVPDKKHQYGYGRAAYFW 69          
BLAST of mRNA_S-dermatodea_contig8094.16286.1 vs. uniprot
Match: A0A485KXT3_9STRA (Aste57867_12533 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KXT3_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 2.030e-19
Identity = 46/74 (62.16%), Postives = 57/74 (77.03%), Query Frame = 2
Query:  251 SMQTVKLALAGNLVITVAKFLAYMHSGSSAMSSEAMHSLVDAANQLLLVVGLRSAATAPDKQHQYGYGKAVYFW 472
            S   V  A+AGN +IT  KF+AY+ +GSSAM SEA+HSLVD  NQ LL++GLR A+  PDK+HQYGYG+A YFW
Sbjct:  167 SQDMVFRAMAGNTLITSLKFMAYLKTGSSAMLSEAIHSLVDTGNQGLLILGLRQASHQPDKKHQYGYGRAAYFW 240          
BLAST of mRNA_S-dermatodea_contig8094.16286.1 vs. uniprot
Match: A0A024UAM7_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UAM7_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 4.160e-19
Identity = 45/74 (60.81%), Postives = 56/74 (75.68%), Query Frame = 2
Query:  251 SMQTVKLALAGNLVITVAKFLAYMHSGSSAMSSEAMHSLVDAANQLLLVVGLRSAATAPDKQHQYGYGKAVYFW 472
            S   V  A+AGN +IT  K +AY+ +GSSAM SEA+HSLVD  NQ LL++GLR A+  PDK+HQYGYG+A YFW
Sbjct:  130 SQDMVFRAMAGNTLITALKLMAYLKTGSSAMLSEAIHSLVDTGNQGLLILGLRQASFQPDKKHQYGYGRAAYFW 203          
BLAST of mRNA_S-dermatodea_contig8094.16286.1 vs. uniprot
Match: A0A397FC77_9STRA (Uncharacterized protein (Fragment) n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FC77_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 4.520e-19
Identity = 45/74 (60.81%), Postives = 55/74 (74.32%), Query Frame = 2
Query:  251 SMQTVKLALAGNLVITVAKFLAYMHSGSSAMSSEAMHSLVDAANQLLLVVGLRSAATAPDKQHQYGYGKAVYFW 472
            S   V  A+AGN +IT  K  AY+ +GSSAM SEA+HSLVD  NQ LL++GLR A+  PDK+HQYGYG+A YFW
Sbjct:   92 SQDMVFRAMAGNTLITALKLAAYLKTGSSAMLSEAIHSLVDTGNQGLLILGLRQASFQPDKKHQYGYGRAAYFW 165          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8094.16286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J9P9_9PHAE1.440e-4359.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7R8_ECTSI4.990e-3762.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4D571_HETAK2.960e-2860.82Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
W7TG20_9STRA1.240e-2670.67Zinc transporter 9 n=2 Tax=Monodopsidaceae TaxID=4... [more]
A0A1W0A8Z9_9STRA3.620e-2068.66Zinc transporter n=1 Tax=Thraustotheca clavata Tax... [more]
K0SKH5_THAOC1.610e-1960.00Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
F0WBY3_9STRA1.750e-1965.67Zinc transporter putative n=2 Tax=Albugo TaxID=653... [more]
A0A485KXT3_9STRA2.030e-1962.16Aste57867_12533 protein n=1 Tax=Aphanomyces stella... [more]
A0A024UAM7_9STRA4.160e-1960.81Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A397FC77_9STRA4.520e-1960.81Uncharacterized protein (Fragment) n=4 Tax=Aphanom... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8094contigS-dermatodea_contig8094:4417..8670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.8
Seed ortholog evalue3.3e-32
Seed eggNOG ortholog2880.D7G7R8
KEGG koko:K14696
KEGG TC2.A.4.6
EggNOG free text desc.cation transmembrane transporter activity
EggNOG OGsCOG0053@1,KOG2802@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categoryother localisation
Exons3
Model size476
Cds size462
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8094.16286.1prot_S-dermatodea_contig8094.16286.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8094 4430..8670 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925319.7431033-UTR-S-dermatodea_contig8094:4416..44291622925319.7431033-UTR-S-dermatodea_contig8094:4416..4429Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8094 4417..4429 +
1694079852.552958-UTR-S-dermatodea_contig8094:4416..44291694079852.552958-UTR-S-dermatodea_contig8094:4416..4429Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8094 4417..4429 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925319.7530947-CDS-S-dermatodea_contig8094:4429..46841622925319.7530947-CDS-S-dermatodea_contig8094:4429..4684Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8094 4430..4684 +
1694079852.5658092-CDS-S-dermatodea_contig8094:4429..46841694079852.5658092-CDS-S-dermatodea_contig8094:4429..4684Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8094 4430..4684 +
1622925319.768772-CDS-S-dermatodea_contig8094:6570..67541622925319.768772-CDS-S-dermatodea_contig8094:6570..6754Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8094 6571..6754 +
1694079852.5863311-CDS-S-dermatodea_contig8094:6570..67541694079852.5863311-CDS-S-dermatodea_contig8094:6570..6754Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8094 6571..6754 +
1622925319.7788613-CDS-S-dermatodea_contig8094:8647..86701622925319.7788613-CDS-S-dermatodea_contig8094:8647..8670Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8094 8648..8670 +
1694079852.6032245-CDS-S-dermatodea_contig8094:8647..86701694079852.6032245-CDS-S-dermatodea_contig8094:8647..8670Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8094 8648..8670 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8094.16286.1

>prot_S-dermatodea_contig8094.16286.1 ID=prot_S-dermatodea_contig8094.16286.1|Name=mRNA_S-dermatodea_contig8094.16286.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=154bp
MPPIPHALHLSRLGRNDGAWENGVLAAAMGAQRVTFSAGDPTSSSVPKNR
SAGKEQSSNSNMDEETRKSIGESDEKAKKSMQTVKLALAGNLVITVAKFL
AYMHSGSSAMSSEAMHSLVDAANQLLLVVGLRSAATAPDKQHQYGYGKAV
YFWC
back to top

mRNA from alignment at S-dermatodea_contig8094:4417..8670+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8094.16286.1 ID=mRNA_S-dermatodea_contig8094.16286.1|Name=mRNA_S-dermatodea_contig8094.16286.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4254bp|location=Sequence derived from alignment at S-dermatodea_contig8094:4417..8670+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGTGGTGCAGCAATGCCGCCCATCCCGCATGCGCTTCACCTGTCGAGGC TTGGCAGGAACGATGGTGCGTGGGAGAACGGCGTCCTGGCTGCTGCGATG GGGGCACAGCGCGTGACGTTTAGTGCGGGAGATCCGACTTCCTCCTCAGT TCCCAAGAACAGGAGCGCCGGCAAGGAGCAATCGTCGAATTCAAACATGG ACGAAGAGACTAGGAAGTCGATCGGGGAGAGCGACGAGAAGGCCAAGAAG AGCATGCAGACGGTCAAGGTCAGGCGTGGCCCTTGTTTTGCGCTATCGTA GAGTTGCAGAGCGAAGAAGCACCCCGCGATTTGGAGGTCGTGGCTGTTGG CGGCGACCCTTCGGAGATCTGTCGCCTGAGGAGGGGCTCTTTGCGGTGTT TGAAATTGGCTTTGTCTCCCGTTTCGGCAGGAGTATTGTCCCTGATACAC GTACAAGTACAGCTCGTGACGTGTGGATCACGGGGTTGCATGATGTGTGT GGGCGCGTGGGTCTTACCGCGATGTTCTATTGCACCTCCCAGGAAGTCAA TGGTTCCATTGAAGAGTTCTATAGCTGCAACGAGCTACAAACAGTAGTAT GCAGGAGCTTTTGGCTCGCAGCCTCCGCAACCAAACATGTGTTTCTGGAA CCCGGCCACAGCCAACACAGAAGTTCCTATTAATATTATATTAGAGCTCT CAGGTTGTCAAGTTTGTGCTTGCACAACTGGAGTACTTGTATTTAATTAA TAAGGATAGTATAAACTGCAGCACTTGCACGAGTACTTACTTGTAGCAGT TCCAGGTTCAACAGCAGTTATCATACAACTACTGTAATAATAATATAAAT AGTATCAGAATCAGCTGTGTCTTCCTTTTGACAGACGGCTATGATATCGT ATCATACAATAGGACACACGCGTAGCCTAGAGCTCTACGCCAGAAACGAT TGAACACAACACTTCAACACTTCAAACACCCGGTCGAGAGCTGTCCATCC CACAGCCATCGTCGCACCAACTAACCCATGAAAACACACACCTACAGTAT TTGCTTGTGCACACAGCATATACAAAGCGAAAGGAAAGTAATGCAGTAGT TGTCAGGAAAGCACCCACGTCTTAGTTCGCCCATTCCCGCAAACCGCGCG ATGTTTTGCCCCGGCCTTCCCTGACAACTATTAATACTACTACTGTATTA CAGTAACATTATCGTTTGCTTTTAATATTATACTATTATGGGACTGAGTC CGCTTTTGCCACGAATATATTTATTAATGATGAGCGCTTTGGCCGATTTT TACCAGCGATTTTAGAGAACGATATTGTGTCACCGGAATCCTGTAAGAGA AAGTGAGGCCAAACAACTTGATGTTTGTGCTGAGCGCCAAGTGTTGAAAA GAGTGGGATTTTTCACCTCACGGGTCGCTATTAATAATTAATACCTACAT CGTCAGTAATAAGGGTACTGTATGTATATGTGTAGTATATCGCGGTAACG GATGCAAGCACGAGGGCACACAATCGTGCATGACACCTGACCCGTGGCCG GGTTCTCGTAACTTGTTCACGGCCAGTTCGGTGAGGAGTAGCCCACCGTG CGGCAGCGGTTGTGTTTGAAATACGGCGTGCGGGCATTGGACCCGAAAAC AGGCTCAGTAAAAAAAACGTAAAAAAAACGGTTAGACTAGTGACGTCACG CCTTCGGGCCACTCCCTCAGCGCTATGATACGTTCTGCAGACAGTATGCA TGTTACTTGTATTTATACTGACTTCATCATTATAAAAAAAAAAAATGATT GTTGCAAACATACCTCAGTACTACAATAGTATTAGAATATCAATATGATG GACGGCCTTTTCCGAGGTCCGTCTGTGGACACAAGGGATCATCCCATCTC TCATATCCCCGGCTCTTAGCTTAGTTTATCACGTCACATCGGCTTCGGCA CTCCCGCAGCTCGCCGATTTCTCGGAAACTCTGCTTACTCACGCGCCCGC GCTTTCCGCGGCGGGGGTAGAGGAAATGTACAAACACCGACCCTGCCCGG ATTCGTGTCATATCACGCAGACGAGTATTATTCGATAATTTCTTCTGCAA ATGTTCCCCCAACGTCGACGTGGACGACCGGCCGCTCCCTAACCCCCCCC TCAGCTGGCCTTGGCCGGCAATCTGGTGATCACCGTGGCCAAGTTCCTGG CGTACATGCACAGCGGCTCGAGCGCGATGAGCTCGGAGGCGATGCACTCT CTGGTAGACGCAGCCAACCAGCTGTTGCTCGTCGTGGGGCTCCGGAGCGC GGCCACCGCTCCCGACAAGCAGCACCAGTACGGATACGGTGAGGTTTCTC GCCACAGACGGTCTAGCCCGGAGAGGTACATTGATATTGATTGCTTGATT GATTGATTGATTGATTGATTTGCACACCACGTACAGCCGTTCGACTGAAT CCAACCCGACATGTGGTCGAATGCGCAAAGAGCCGAAGGAGAAAGAAACT AAACCAGGTATCTACTTCTGCATACGCAGCGTTACATACCCTGGCACTTA CTATACTGTAGCACAAGAGAGAAGAAATGCAATAATAAATAATAACAACA CCGGAAAGAGAAAGCAGTTCAAAAAGAATCATAATTGGACAATGTACTAC CGTAGTGTATTGGAATGCAAAATTGGTAAAATATTGGCTTGCGGTAAGGA TATACACCTGTTTAATATCATAGTACTATTAATACTAATATTTTAGTTCG ATTGTGCAGGGCTGTTGAGGAAGAGATGTCTTCCGTTTCACCCATTGGGG ACCGAGTGTTCTGTTGTTCGTGGCCCATCTTCCCGGACCGCTTTTCCCAT CCAATAGGAGTCGAACGGTGTCTACGTTATAGTATATACTATATACTATA TACTATATACTATATACTGTACGATATACCTGGCTGTAGTACAATAAGGA CCTGTGGAGAGGCGAGGGAGCATTGTCCGATTGTCCGATTCCGATTCCTC TTCTAGCGTTTTTTCTATACTATTAATAGTGTATATCCGGGGTAGTAATT TCTTCTTTCTTGCACCATGAGTGAGTACCAGGGACGGTACGGTGTATAGT AGATTTAGAGTTATGATTTGTTATTTTTCTGCTTGGCCCTTTGCGTATCT GACCACAAGTCGGATAGGTCGGATTGAGCCGATCCGCTTCAGGTGTACAA ATAAAAAAACAATCACGCCAATAGTCTATATGTACTCCTCGCCATTATGG CGGTGGAAAAGTGACGCCCTGCCTTTCATACTCAGCTTGCATGCACTGTG CACTTGTGCGCGCATCCGTCTCGACTATTACCCGCTAAATACCCGCTGCA TACCCGCTGTATACCCGCTATATGCCCGGAGTGAACACGTTCGGCGCAAA ACGGACTCAGTCCCAAAAGGGTTGACAGTGTGTTCCCGATGGGGTGCAAT TATTTTTTTTCGTGTTTTTACGACGAAGCCGTGCTGTGGTACGATCCGTG TTTTCGTACGGGAGCCACCGGAGAGAGAGCCCATGAGAGGCCGTAAACGA TGGGGCAGCCCGCACGCACTGCTGATTCGCGAGGTGTTCGTATTGCCGTA GGAGTACAACGAACTGAAGCAGGCATTGGCAATTACGGCAGCCGTAGCAA ACATGTCACGCCCGAACCAACCGAGCCTGAGGCCGGTCGTTGTGTCGAAC TGGGTTCCCATTGCTCAACATATGTAGTCGTATACGAGCAGTTCTTGTCC CCCAGACAGCCCACTTGTAGGTAGACAGACCCATGTGCCACGTGCAGTTT GCCACTGGCTCGGCTGAAGCTGTCGTGGTCCAACACCCACAACTTGGAAG AACGCGCACATACCCGTTACCCGGCTGTGGGTTGCGCGGGGGGTGATTCA GAGCGACGATATTTCTGCCTCACATGTCGCTGCTTCTTGCCATTGGTGTG TCTCCAGTCAGGGCGGTGATATTCTGCCTCGCATGTCCTAGCGTTTTCTC TATATCTGGTGTAGGTACTATTTCTCACTTCTTGTACCATAGAAAGTACC AGGGACGGTACGGTGTATAGTAGAAGTAGAGTTATGATTAGTTATTTTTC TCCTTGACTCTTTGCGTGTCTGGCCACAAGTCGGGTCGGGTTAAGCCGAT CGGCTATACGTGTGCAAATCAAACCAATCAAATCAAACCAAATCAATGTC GCTGACTCTTGCCAATGCTGTGTCTCCTCAGGAAAGGCGGTGTACTTCTG GTGC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig8094:4417..8670+

>mRNA_S-dermatodea_contig8094.16286.1 ID=mRNA_S-dermatodea_contig8094.16286.1|Name=mRNA_S-dermatodea_contig8094.16286.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at S-dermatodea_contig8094:4417..8670+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCGCCCATCCCGCATGCGCTTCACCTGTCGAGGCTTGGCAGGAACGA
TGGTGCGTGGGAGAACGGCGTCCTGGCTGCTGCGATGGGGGCACAGCGCG
TGACGTTTAGTGCGGGAGATCCGACTTCCTCCTCAGTTCCCAAGAACAGG
AGCGCCGGCAAGGAGCAATCGTCGAATTCAAACATGGACGAAGAGACTAG
GAAGTCGATCGGGGAGAGCGACGAGAAGGCCAAGAAGAGCATGCAGACGG
TCAAGATGCCGCCCATCCCGCATGCGCTTCACCTGTCGAGGCTTGGCAGG
AACGATGGTGCGTGGGAGAACGGCGTCCTGGCTGCTGCGATGGGGGCACA
GCGCGTGACGTTTAGTGCGGGAGATCCGACTTCCTCCTCAGTTCCCAAGA
ACAGGAGCGCCGGCAAGGAGCAATCGTCGAATTCAAACATGGACGAAGAG
ACTAGGAAGTCGATCGGGGAGAGCGACGAGAAGGCCAAGAAGAGCATGCA
GACGGTCAAGCTGGCCTTGGCCGGCAATCTGGTGATCACCGTGGCCAAGT
TCCTGGCGTACATGCACAGCGGCTCGAGCGCGATGAGCTCGGAGGCGATG
CACTCTCTGGTAGACGCAGCCAACCAGCTGTTGCTCGTCGTGGGGCTCCG
GAGCGCGGCCACCGCTCCCGACAAGCAGCACCAGTACGGATACGCTGGCC
TTGGCCGGCAATCTGGTGATCACCGTGGCCAAGTTCCTGGCGTACATGCA
CAGCGGCTCGAGCGCGATGAGCTCGGAGGCGATGCACTCTCTGGTAGACG
CAGCCAACCAGCTGTTGCTCGTCGTGGGGCTCCGGAGCGCGGCCACCGCT
CCCGACAAGCAGCACCAGTACGGATACGGAAAGGCGGTGTACTTCTGGTG
CGAAAGGCGGTGTACTTCTGGTGC
back to top