mRNA_S-dermatodea_contig80906.16283.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig80906.16283.1
Unique NamemRNA_S-dermatodea_contig80906.16283.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig80906.16283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig80906contigS-dermatodea_contig80906:6..735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size241
Cds size240
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig80906.16283.1prot_S-dermatodea_contig80906.16283.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig80906 6..734 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925319.5557199-CDS-S-dermatodea_contig80906:5..571622925319.5557199-CDS-S-dermatodea_contig80906:5..57Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80906 6..57 +
1694079852.4302294-CDS-S-dermatodea_contig80906:5..571694079852.4302294-CDS-S-dermatodea_contig80906:5..57Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80906 6..57 +
1622925319.565763-CDS-S-dermatodea_contig80906:297..4351622925319.565763-CDS-S-dermatodea_contig80906:297..435Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80906 298..435 +
1694079852.4440906-CDS-S-dermatodea_contig80906:297..4351694079852.4440906-CDS-S-dermatodea_contig80906:297..435Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80906 298..435 +
1622925319.5762403-CDS-S-dermatodea_contig80906:684..7341622925319.5762403-CDS-S-dermatodea_contig80906:684..734Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80906 685..734 +
1694079852.4586787-CDS-S-dermatodea_contig80906:684..7341694079852.4586787-CDS-S-dermatodea_contig80906:684..734Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80906 685..734 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig80906.16283.1

>prot_S-dermatodea_contig80906.16283.1 ID=prot_S-dermatodea_contig80906.16283.1|Name=mRNA_S-dermatodea_contig80906.16283.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=80bp
TKDECCKRRSSSSSSSSGHDYCKDYSCPDHYDYKGDDHYKCKDSHCTKDE
CCKRRSSSSSSSSGHDYCKDYSCPDHYDYK
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mRNA from alignment at S-dermatodea_contig80906:6..735+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig80906.16283.1 ID=mRNA_S-dermatodea_contig80906.16283.1|Name=mRNA_S-dermatodea_contig80906.16283.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=730bp|location=Sequence derived from alignment at S-dermatodea_contig80906:6..735+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACGAAAGACGAGTGCTGCAAGCGTCGCTCTTCGTCGTCCTCGTCAAGCAG
CGGTGAGCATAATCGTGCAGGTTGTGTTCCTAGTGGAGGGATGAAGTGGG
TTTGACGTTTGGTAAATACTCTAGTCCCATAGCCTAGTAGGCGGATACTT
GAGTGTGGCATTTCGCCGGCACGCACAACCAATGAACCCGGAGCTTGATT
GTACTTTGGCCGAAACGAACGCACCTAGTGTCAAATGGATTTGGGAGCAG
AAGCTTTAGAGTTGACCCTATCCCGCCCCCTCGCCCGGCCAGGCCACGAC
TACTGCAAGGACTACAGCTGCCCTGATCACTACGACTACAAGGGTGACGA
CCACTACAAGTGCAAGGATTCCCACTGCACGAAGGACGAGTGCTGCAAGC
GTCGCTCTTCGTCGTCCTCGTCAAGCAGCGGTGAGTATAATCGTGCCGGG
TGTGTTTCTAGTGGAGGGATGAAGTGGGTTTGACGTTTGGTAAAGCCTCT
AGTCCCATAGCCTAGTAGGCGGATACTTGAGTGTGGCATTTCGACGGCAC
GCACAACCAATGAACCCGGAGCTTGATTGTATTTCGGCCGAAACGAACGC
ACATAGTGTCAATTAGGTCAAATGTTCTTCGTAGAAGAAGCTATAGAGTT
GACCCTATCCCGCCCACTTGCACGTCCAGGCCACGACTACTGCAAGGACT
ACAGCTGCCCTGATCACTACGACTACAAGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig80906:6..735+

>mRNA_S-dermatodea_contig80906.16283.1 ID=mRNA_S-dermatodea_contig80906.16283.1|Name=mRNA_S-dermatodea_contig80906.16283.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at S-dermatodea_contig80906:6..735+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACGAAAGACGAGTGCTGCAAGCGTCGCTCTTCGTCGTCCTCGTCAAGCAG
CGACGAAAGACGAGTGCTGCAAGCGTCGCTCTTCGTCGTCCTCGTCAAGC
AGCGGCCACGACTACTGCAAGGACTACAGCTGCCCTGATCACTACGACTA
CAAGGGTGACGACCACTACAAGTGCAAGGATTCCCACTGCACGAAGGACG
AGTGCTGCAAGCGTCGCTCTTCGTCGTCCTCGTCAAGCAGCGGCCACGAC
TACTGCAAGGACTACAGCTGCCCTGATCACTACGACTACAAGGGTGACGA
CCACTACAAGTGCAAGGATTCCCACTGCACGAAGGACGAGTGCTGCAAGC
GTCGCTCTTCGTCGTCCTCGTCAAGCAGCGGCCACGACTACTGCAAGGAC
TACAGCTGCCCTGATCACTACGACTACAAGGCCACGACTACTGCAAGGAC
TACAGCTGCCCTGATCACTACGACTACAAG
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