mRNA_S-dermatodea_contig80714.16260.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig80714.16260.1
Unique NamemRNA_S-dermatodea_contig80714.16260.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig80714.16260.1 vs. uniprot
Match: D8LKW9_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW9_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 3.080e-24
Identity = 45/59 (76.27%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    1 QILEAGDEERGSPPPEFEVSAHYTGTLENGEKFDSSRDRGKAFVFTIGTGNVIKGWDVG 177
            +ILE GD+ERG+PPPE+EVSAHYTGT+E+GEKFDSSRDRGK F F IG G+VIK WD+G
Sbjct:   24 KILETGDDERGNPPPEYEVSAHYTGTIESGEKFDSSRDRGKPFTFQIGMGSVIKAWDIG 82
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BLAST of mRNA_S-dermatodea_contig80714.16260.1 vs. uniprot
Match: A0A836CK73_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK73_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 4.660e-18
Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:   10 EAGDEERGSPPPEFEVSAHYTGTLENGEKFDSSRDRGKAFVFTIGTGNVIKGWDVG 177
            +AG+ E  +PP  +EVSAHYTGTLE+G KFDSSRDRG+ F FTIG G VIKGWD+G
Sbjct:   27 DAGEGEESTPPKGYEVSAHYTGTLEDGTKFDSSRDRGQPFKFTIGQGQVIKGWDLG 82
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BLAST of mRNA_S-dermatodea_contig80714.16260.1 vs. uniprot
Match: A0A7S2V5G3_9STRA (Peptidylprolyl isomerase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5G3_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 8.870e-18
Identity = 37/59 (62.71%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    1 QILEAGDEERGSPPPEFEVSAHYTGTLENGEKFDSSRDRGKAFVFTIGTGNVIKGWDVG 177
            ++LEA  E+  +P   ++V AHYTGTLE+G+KFDSSRDRG+ F F IG G VIKGWDVG
Sbjct:   34 KVLEAAPEDAETPVDGYDVEAHYTGTLEDGQKFDSSRDRGQPFKFVIGQGQVIKGWDVG 92
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BLAST of mRNA_S-dermatodea_contig80714.16260.1 vs. uniprot
Match: V4ALQ1_LOTGI (Peptidylprolyl isomerase n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4ALQ1_LOTGI)

HSP 1 Score: 83.2 bits (204), Expect = 2.610e-17
Identity = 39/59 (66.10%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:    1 QILEAGDEERGSPPPEFEVSAHYTGTLENGEKFDSSRDRGKAFVFTIGTGNVIKGWDVG 177
            +IL+AGDE  GSP    +V  HY GTL NGEKFDSSRDRG+ F FT+GTG VIK WD+G
Sbjct:   26 EILKAGDENEGSPSTGDKVFVHYVGTLLNGEKFDSSRDRGEKFEFTLGTGQVIKAWDLG 84
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BLAST of mRNA_S-dermatodea_contig80714.16260.1 vs. uniprot
Match: A0A7S2PZW5_9STRA (Peptidylprolyl isomerase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PZW5_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 4.170e-17
Identity = 43/60 (71.67%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:    4 ILEAGDEERGSPPPE-FEVSAHYTGTLEN-GEKFDSSRDRGKAFVFTIGTGNVIKGWDVG 177
            ILEA  E+   PPP   EV+AHYTGTLE+ G KFDSSRDRGK FVFTIG G VIKGWD G
Sbjct:   19 ILEAAPEDAAGPPPNGVEVTAHYTGTLESDGSKFDSSRDRGKPFVFTIGQGQVIKGWDEG 78
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BLAST of mRNA_S-dermatodea_contig80714.16260.1 vs. uniprot
Match: A0A2R5G435_9STRA (Peptidylprolyl isomerase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G435_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 5.250e-16
Identity = 38/59 (64.41%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:    1 QILEAGDEERGSPPPEFEVSAHYTGTLENGEKFDSSRDRGKAFVFTIGTGNVIKGWDVG 177
            ++L  G+E   +P    +V AHYTGTLE+G KFDSSRDRGK F FTIG G VIKGWDVG
Sbjct:   62 KVLALGEENGATPQSGDQVYAHYTGTLEDGTKFDSSRDRGKEFDFTIGQGQVIKGWDVG 120
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BLAST of mRNA_S-dermatodea_contig80714.16260.1 vs. uniprot
Match: B8BR35_THAPS (Peptidylprolyl isomerase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BR35_THAPS)

HSP 1 Score: 79.0 bits (193), Expect = 9.620e-16
Identity = 40/59 (67.80%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:    4 ILEAGDEERGSPPPEFEVSAHYTGTLEN-GEKFDSSRDRGKAFVFTIGTGNVIKGWDVG 177
            I+ A  ++  +P P  EVSAHYTGTLE+ G KFDSSRDRGK F FTIGTG VIKGWD G
Sbjct:   19 IITAAPDDALTPTPGSEVSAHYTGTLESDGSKFDSSRDRGKPFKFTIGTGQVIKGWDEG 77
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BLAST of mRNA_S-dermatodea_contig80714.16260.1 vs. uniprot
Match: A0A7S2WCS8_9STRA (Peptidylprolyl isomerase (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WCS8_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.150e-15
Identity = 39/59 (66.10%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:    1 QILEAGDEERGSPPPEFEVSAHYTGTLENGEKFDSSRDRGKAFVFTIGTGNVIKGWDVG 177
            +IL+ G  E   P P  +V AHYTGTLE+G KFDSSRDRGK F FTIG G VIKGWD+G
Sbjct:   30 KILKEGKGE--CPQPGDQVFAHYTGTLEDGSKFDSSRDRGKLFDFTIGQGQVIKGWDLG 86
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BLAST of mRNA_S-dermatodea_contig80714.16260.1 vs. uniprot
Match: A0A0P9CSF9_9CHLR (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Kouleothrix aurantiaca TaxID=186479 RepID=A0A0P9CSF9_9CHLR)

HSP 1 Score: 72.8 bits (177), Expect = 1.340e-15
Identity = 35/59 (59.32%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:    1 QILEAGDEERGSPPPEFEVSAHYTGTLENGEKFDSSRDRGKAFVFTIGTGNVIKGWDVG 177
            QI +  + +  +P     VS HYTG LENG+KFDSSRDRG+ FVFT+G G VIKGWD G
Sbjct:    7 QIEKLAEGQGETPKTGDRVSVHYTGWLENGKKFDSSRDRGQPFVFTLGRGQVIKGWDQG 65
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BLAST of mRNA_S-dermatodea_contig80714.16260.1 vs. uniprot
Match: UPI000A1C73BB (12 kDa FK506-binding protein-like isoform X2 n=2 Tax=Boleophthalmus pectinirostris TaxID=150288 RepID=UPI000A1C73BB)

HSP 1 Score: 73.6 bits (179), Expect = 1.530e-15
Identity = 36/59 (61.02%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:    1 QILEAGDEERGSPPPEFEVSAHYTGTLENGEKFDSSRDRGKAFVFTIGTGNVIKGWDVG 177
            ++L+ GD +   P    +V  HY GTL  GEKFDSSRDRGK FVFTIG G VIKGWD G
Sbjct:    6 EVLKPGDGKWSYPQRGQKVVVHYIGTLTTGEKFDSSRDRGKPFVFTIGHGEVIKGWDEG 64
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig80714.16260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKW9_ECTSI3.080e-2476.27Peptidylprolyl isomerase n=1 Tax=Ectocarpus silicu... [more]
A0A836CK73_9STRA4.660e-1869.64Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
A0A7S2V5G3_9STRA8.870e-1862.71Peptidylprolyl isomerase (Fragment) n=1 Tax=Fibroc... [more]
V4ALQ1_LOTGI2.610e-1766.10Peptidylprolyl isomerase n=1 Tax=Lottia gigantea T... [more]
A0A7S2PZW5_9STRA4.170e-1771.67Peptidylprolyl isomerase n=1 Tax=Skeletonema marin... [more]
A0A2R5G435_9STRA5.250e-1664.41Peptidylprolyl isomerase n=1 Tax=Hondaea fermental... [more]
B8BR35_THAPS9.620e-1667.80Peptidylprolyl isomerase n=1 Tax=Thalassiosira pse... [more]
A0A7S2WCS8_9STRA1.150e-1566.10Peptidylprolyl isomerase (Fragment) n=1 Tax=labyri... [more]
A0A0P9CSF9_9CHLR1.340e-1559.32Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
UPI000A1C73BB1.530e-1561.0212 kDa FK506-binding protein-like isoform X2 n=2 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig80714contigS-dermatodea_contig80714:124..300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.7
Seed ortholog evalue1.2e-19
Seed eggNOG ortholog2880.D8LKW9
KEGG koko:K01802,ko:K09568
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000413,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0003755,GO:0003824,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006355,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006955,GO:0006974,GO:0008143,GO:0008144,GO:0008150,GO:0008152,GO:0008380,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0012505,GO:0016018,GO:0016070,GO:0016071,GO:0016192,GO:0016604,GO:0016607,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019219,GO:0019222,GO:0019538,GO:0030141,GO:0031323,GO:0031326,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032940,GO:0032991,GO:0033218,GO:0033554,GO:0034641,GO:0034774,GO:0036211,GO:0036230,GO:0042119,GO:0042277,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043900,GO:0043902,GO:0043903,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045055,GO:0045069,GO:0045070,GO:0045321,GO:0046483,GO:0046903,GO:0048518,GO:0048524,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051171,GO:0051179,GO:0051234,GO:0051252,GO:0051716,GO:0060205,GO:0060255,GO:0065007,GO:0070013,GO:0070717,GO:0071007,GO:0071013,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097708,GO:0099503,GO:0101002,GO:0140096,GO:1901360,GO:1901363,GO:1901564,GO:1902494,GO:1903506,GO:1903900,GO:1903902,GO:1904813,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.FK506 binding
EggNOG OGsCOG0545@1,COG0652@1,KOG0543@2759,KOG0865@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03110
Hectar predicted targeting categoryother localisation
Exons1
Model size177
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925318.0712016-CDS-S-dermatodea_contig80714:123..3001622925318.0712016-CDS-S-dermatodea_contig80714:123..300Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80714 124..300 -
1694079851.40331-CDS-S-dermatodea_contig80714:123..3001694079851.40331-CDS-S-dermatodea_contig80714:123..300Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80714 124..300 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig80714.16260.1prot_S-dermatodea_contig80714.16260.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig80714 124..300 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig80714.16260.1

>prot_S-dermatodea_contig80714.16260.1 ID=prot_S-dermatodea_contig80714.16260.1|Name=mRNA_S-dermatodea_contig80714.16260.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=59bp
QILEAGDEERGSPPPEFEVSAHYTGTLENGEKFDSSRDRGKAFVFTIGTG
NVIKGWDVG
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mRNA from alignment at S-dermatodea_contig80714:124..300-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig80714.16260.1 ID=mRNA_S-dermatodea_contig80714.16260.1|Name=mRNA_S-dermatodea_contig80714.16260.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=177bp|location=Sequence derived from alignment at S-dermatodea_contig80714:124..300- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGATCCTAGAGGCCGGTGATGAGGAGCGAGGTTCTCCGCCCCCGGAGTT
CGAGGTGTCGGCGCACTACACGGGCACCTTAGAAAATGGAGAGAAGTTCG
ACTCTTCCCGCGACAGGGGCAAGGCCTTCGTGTTCACCATCGGAACTGGC
AACGTCATCAAGGGCTGGGATGTCGGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig80714:124..300-

>mRNA_S-dermatodea_contig80714.16260.1 ID=mRNA_S-dermatodea_contig80714.16260.1|Name=mRNA_S-dermatodea_contig80714.16260.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at S-dermatodea_contig80714:124..300- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGATCCTAGAGGCCGGTGATGAGGAGCGAGGTTCTCCGCCCCCGGAGTT
CGAGGTGTCGGCGCACTACACGGGCACCTTAGAAAATGGAGAGAAGTTCG
ACTCTTCCCGCGACAGGGGCAAGGCCTTCGTGTTCACCATCGGAACTGGC
AACGTCATCAAGGGCTGGGATGTCGGTCAGATCCTAGAGGCCGGTGATGA
GGAGCGAGGTTCTCCGCCCCCGGAGTTCGAGGTGTCGGCGCACTACACGG
GCACCTTAGAAAATGGAGAGAAGTTCGACTCTTCCCGCGACAGGGGCAAG
GCCTTCGTGTTCACCATCGGAACTGGCAACGTCATCAAGGGCTGGGATGT
CGGT
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