mRNA_S-dermatodea_contig807.16259.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig807.16259.1
Unique NamemRNA_S-dermatodea_contig807.16259.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig807.16259.1 vs. uniprot
Match: A0A6H5JNJ8_9PHAE (MYND-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JNJ8_9PHAE)

HSP 1 Score: 377 bits (967), Expect = 4.770e-126
Identity = 210/402 (52.24%), Postives = 267/402 (66.42%), Query Frame = 1 
Query:    7 SAVCDKVWKELRKLRE--VPPLESPQDTYK--------YTDYQAYTACNEVRNLLGPCSELPRDEFLAVFAGLVAGPRMEELLGLFRSSQS--HPALRYACLLALHGAAELSEERELMVSHAELPSALLSAMASPQKQLITPETAGASGAQEVNTAAGAITTIAGLFSSNSTLEPKYAELWVGLGAVSALVSSLEGHAAFDRTVPVTGDLPLCFLLVSTSLLAGAADAVSEEDKIRLGTAWLQLFVDARSWIAQEAGDHLADFYVRPNWLNGVVDQIPTEARQRAVEAARKSEAEGT------WKSGRADHLATAL-----------GLALGRRCAGPGCVK---------------------DGV-----KRCSRCQGVRYCSMECQAGHWRKGHRKACTS 1047
            S    K+W+ELRKLR+   PP+++   + K        Y D+ A+ ACNEVR  +G  S LPRD+FLA+F  LVAGPR++ELL LF+ S+S  HPAL+YACL+ALHG AELS+ R+ +++  ++   L + MASP+++L+TP +AGA G + VN AAGA+TTI GLF+SN  LEP YA+LWV LGAVSAL S LE HA FDR+ PV+GDLPLCF L++TSLLAGAAD+VSEEDK+RLG AWL +F++A  WIA EA D LADFY RPNWL  +V+++P + R  AV AAR+ E EGT      WK G+AD LA AL           G  +GRRCAGP C +                     DG      KRCS+C  V YCS ECQ   W+K HRKAC++
Sbjct:    5 STSSSKIWQELRKLRDDIPPPVDNNTGSNKGDQESSTCYKDFAAFAACNEVRVAIGRSSALPRDQFLAIFRQLVAGPRLDELLELFKFSRSPPHPALQYACLVALHGVAELSDRRKDLLTRPDVVKELCAVMASPRQRLVTPTSAGAGGVEIVNAAAGAVTTITGLFTSNGPLEPPYAKLWVELGAVSALASCLENHAVFDRSNPVSGDLPLCFFLIATSLLAGAADSVSEEDKLRLGKAWLTVFLEATRWIADEAADLLADFYTRPNWLKNIVERMPEKLRASAVAAARECEREGTGSGSSPWKGGKADRLALALLCGNAYNWDAGGELVGRRCAGPRCDRVQKCGHGGGNPHPAASEDEGGDGAASVAFKRCSQCHAVGYCSRECQKAGWKK-HRKACSA 405
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BLAST of mRNA_S-dermatodea_contig807.16259.1 vs. uniprot
Match: A0A2Z6MNH5_TRISU (Uncharacterized protein n=4 Tax=Trifolium TaxID=3898 RepID=A0A2Z6MNH5_TRISU)

HSP 1 Score: 58.9 bits (141), Expect = 7.970e-6
Identity = 22/35 (62.86%), Postives = 25/35 (71.43%), Query Frame = 1 
Query:  937 CVKDGVKRCSRCQGVRYCSMECQAGHWRKGHRKAC 1041
            C   GVKRCSRC+ VRYCS ECQ  HW+ GH+  C
Sbjct:   77 CASRGVKRCSRCKSVRYCSTECQQSHWKSGHKDKC 111
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BLAST of mRNA_S-dermatodea_contig807.16259.1 vs. uniprot
Match: A0A164TVR6_9AGAM (MYND-type domain-containing protein n=2 Tax=Sistotremastrum TaxID=139133 RepID=A0A164TVR6_9AGAM)

HSP 1 Score: 52.4 bits (124), Expect = 5.850e-5
Identity = 23/44 (52.27%), Postives = 28/44 (63.64%), Query Frame = 1 
Query:  916 RRCAGPGCVKDGVKRCSRCQGVRYCSMECQAGHWRKGHRKACTS 1047
            R CAG      G+K CSRC+ VRYCS +CQ  HW  GH++ C S
Sbjct:   72 RFCAGCFRPSVGLKVCSRCESVRYCSDQCQKRHWTHGHKEECIS 115
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BLAST of mRNA_S-dermatodea_contig807.16259.1 vs. uniprot
Match: E1Z3N4_CHLVA (MYND-type domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z3N4_CHLVA)

HSP 1 Score: 56.2 bits (134), Expect = 6.100e-5
Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:  919 RCAGPGCVKDGVKRCSRCQGVRYCSMECQAGHWRKGHRK 1035
            RCAG G V   VK+C  C+ V YCS +CQA HWR+GHR+
Sbjct:  392 RCAGCGNVVSEVKKCGGCRAVAYCSCQCQARHWREGHRE 430
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BLAST of mRNA_S-dermatodea_contig807.16259.1 vs. uniprot
Match: A0A835WL21_9CHLO (MYND-type domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WL21_9CHLO)

HSP 1 Score: 55.8 bits (133), Expect = 9.100e-5
Identity = 26/60 (43.33%), Postives = 31/60 (51.67%), Query Frame = 1 
Query:  916 RRCAGPGCVKDG----------VKRCSRCQGVRYCSMECQAGHWRKGHRKACTSAAAVLA 1065
            R C  PGC   G          ++ C RC+ VRYCS+ CQA HWR GH   C   AA +A
Sbjct: 1438 RVCGNPGCEAFGSSSSSEAELDLRLCGRCKSVRYCSVACQAAHWRSGHGAVCARVAAAVA 1497
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BLAST of mRNA_S-dermatodea_contig807.16259.1 vs. uniprot
Match: A0A835SMH0_CHLIN (MYND-type domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835SMH0_CHLIN)

HSP 1 Score: 55.5 bits (132), Expect = 9.530e-5
Identity = 26/56 (46.43%), Postives = 32/56 (57.14%), Query Frame = 1 
Query:  901 GLALGRRC-AGPGCVKDGVKRCSRCQGVRYCSMECQAGHWRKGHRKACTSAAAVLA 1065
            G+ +  RC A  G     +++CSRCQ VRYCS  CQ  HW  GH + C   AA LA
Sbjct:  533 GIKVCARCGAAAGAGGTRLRKCSRCQAVRYCSEACQTAHWAAGHERECKQLAAALA 588
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig807.16259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JNJ8_9PHAE4.770e-12652.24MYND-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A2Z6MNH5_TRISU7.970e-662.86Uncharacterized protein n=4 Tax=Trifolium TaxID=38... [more]
A0A164TVR6_9AGAM5.850e-552.27MYND-type domain-containing protein n=2 Tax=Sistot... [more]
E1Z3N4_CHLVA6.100e-558.97MYND-type domain-containing protein n=1 Tax=Chlore... [more]
A0A835WL21_9CHLO9.100e-543.33MYND-type domain-containing protein n=1 Tax=Chlamy... [more]
A0A835SMH0_CHLIN9.530e-546.43MYND-type domain-containing protein n=1 Tax=Chlamy... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig807contigS-dermatodea_contig807:15639..16973 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score60.8
Seed ortholog evalue1.4e-06
Seed eggNOG ortholog4641.GSMUA_Achr10P30230_001
Preferred nameUBP16
KEGG koko:K11855
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0006464,GO:0006508,GO:0006807,GO:0006950,GO:0006970,GO:0007275,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008283,GO:0009628,GO:0009651,GO:0009791,GO:0009908,GO:0009987,GO:0016579,GO:0016787,GO:0019538,GO:0019783,GO:0022414,GO:0022622,GO:0032501,GO:0032502,GO:0036211,GO:0036459,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0047484,GO:0048364,GO:0048366,GO:0048367,GO:0048583,GO:0048608,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050896,GO:0061458,GO:0065007,GO:0070011,GO:0070646,GO:0070647,GO:0071704,GO:0080134,GO:0090567,GO:0099402,GO:0101005,GO:0140096,GO:1901000,GO:1901564
EggNOG free text desc.Ubiquitin carboxyl-terminal hydrolase
EggNOG OGs37I2Y@33090,KOG1865@1,KOG1865@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, MYND-type
Ec32 orthologEc-02_005590.1
Exons2
Model size1068
Cds size1068
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925318.0210536-CDS-S-dermatodea_contig807:15638..157641622925318.0210536-CDS-S-dermatodea_contig807:15638..15764Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig807 15639..15764 +
1694079851.3792763-CDS-S-dermatodea_contig807:15638..157641694079851.3792763-CDS-S-dermatodea_contig807:15638..15764Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig807 15639..15764 +
1622925318.0373623-CDS-S-dermatodea_contig807:16031..169731622925318.0373623-CDS-S-dermatodea_contig807:16031..16973Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig807 16032..16973 +
1694079851.3937182-CDS-S-dermatodea_contig807:16031..169731694079851.3937182-CDS-S-dermatodea_contig807:16031..16973Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig807 16032..16973 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig807.16259.1prot_S-dermatodea_contig807.16259.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig807 15639..16973 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig807.16259.1

>prot_S-dermatodea_contig807.16259.1 ID=prot_S-dermatodea_contig807.16259.1|Name=mRNA_S-dermatodea_contig807.16259.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=356bp
MASAVCDKVWKELRKLREVPPLESPQDTYKYTDYQAYTACNEVRNLLGPC
SELPRDEFLAVFAGLVAGPRMEELLGLFRSSQSHPALRYACLLALHGAAE
LSEERELMVSHAELPSALLSAMASPQKQLITPETAGASGAQEVNTAAGAI
TTIAGLFSSNSTLEPKYAELWVGLGAVSALVSSLEGHAAFDRTVPVTGDL
PLCFLLVSTSLLAGAADAVSEEDKIRLGTAWLQLFVDARSWIAQEAGDHL
ADFYVRPNWLNGVVDQIPTEARQRAVEAARKSEAEGTWKSGRADHLATAL
GLALGRRCAGPGCVKDGVKRCSRCQGVRYCSMECQAGHWRKGHRKACTSA
AAVLA*
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mRNA from alignment at S-dermatodea_contig807:15639..16973+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig807.16259.1 ID=mRNA_S-dermatodea_contig807.16259.1|Name=mRNA_S-dermatodea_contig807.16259.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1335bp|location=Sequence derived from alignment at S-dermatodea_contig807:15639..16973+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCTAGCGCCGTTTGCGACAAGGTGTGGAAGGAGCTGCGAAAGCTGAG
GGAAGTCCCGCCGCTGGAGAGTCCCCAAGACACCTACAAGTACACGGACT
ACCAGGCCTACACCGCTTGCAACGAGGTGACAACCGCCAAGAGTTTGTGC
GCAAAAGCTTGCACTTGGTTTGGTTTTCCCCAGGCCGTCACATGAAGCAC
CCCAGTGCGCACGCACACTCTGTATATAATTCGTTCCGCACACAAGGTCG
CGATCGCATCGTATTTTATATTTTATACGTACAATACAAACTGTATGTAC
ATATCGTATCATAGACCTTTCCAAAGTGAAGCATTGCCCGTCATCTGTGC
GTCCTCGGCCCATACGCCCGCTCGCTCCTCTCTCAATCGACAGGTGCGGA
ACTTGCTCGGGCCCTGCTCTGAACTGCCTAGGGATGAATTCCTCGCCGTC
TTCGCCGGCCTTGTCGCGGGGCCACGCATGGAAGAACTCCTAGGCCTATT
TAGGTCCAGTCAAAGCCACCCTGCTCTTCGGTATGCTTGCTTGCTTGCGC
TGCACGGTGCTGCCGAGTTGAGTGAGGAGCGTGAACTTATGGTATCACAC
GCGGAGCTTCCATCGGCGCTTCTCTCGGCGATGGCATCCCCTCAAAAACA
GCTCATCACTCCTGAAACTGCGGGCGCGTCTGGGGCGCAGGAGGTCAACA
CCGCGGCGGGCGCGATTACCACGATCGCCGGACTTTTCTCAAGCAACAGC
ACGTTGGAGCCGAAATACGCCGAGCTCTGGGTAGGCCTCGGTGCGGTTTC
CGCCTTGGTGTCTTCCCTGGAAGGCCACGCGGCGTTCGACCGGACTGTAC
CCGTGACCGGGGACCTCCCGTTGTGCTTTTTATTGGTGTCCACTTCTCTT
CTGGCGGGAGCGGCAGACGCAGTGTCTGAAGAGGACAAAATTAGGCTTGG
GACGGCCTGGCTGCAGCTGTTCGTCGACGCGAGGAGCTGGATCGCCCAAG
AGGCGGGAGATCACCTCGCCGACTTTTACGTCCGCCCGAATTGGCTAAAC
GGCGTCGTCGACCAGATTCCAACTGAGGCCAGACAGAGGGCGGTGGAAGC
CGCGCGAAAGTCGGAGGCCGAAGGTACCTGGAAAAGCGGTCGCGCGGATC
ATTTGGCGACGGCGTTGGGGCTAGCCTTGGGGAGACGGTGTGCCGGACCA
GGCTGTGTGAAGGACGGAGTAAAACGCTGCTCGCGATGTCAGGGCGTGCG
GTACTGCTCGATGGAGTGCCAGGCCGGGCACTGGCGAAAGGGCCATCGAA
AAGCGTGTACATCTGCTGCAGCTGTTCTTGCGTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig807:15639..16973+

>mRNA_S-dermatodea_contig807.16259.1 ID=mRNA_S-dermatodea_contig807.16259.1|Name=mRNA_S-dermatodea_contig807.16259.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2136bp|location=Sequence derived from alignment at S-dermatodea_contig807:15639..16973+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCTAGCGCCGTTTGCGACAAGGTGTGGAAGGAGCTGCGAAAGCTGAG
GGAAGTCCCGCCGCTGGAGAGTCCCCAAGACACCTACAAGTACACGGACT
ACCAGGCCTACACCGCTTGCAACGAGATGGCTAGCGCCGTTTGCGACAAG
GTGTGGAAGGAGCTGCGAAAGCTGAGGGAAGTCCCGCCGCTGGAGAGTCC
CCAAGACACCTACAAGTACACGGACTACCAGGCCTACACCGCTTGCAACG
AGGTGCGGAACTTGCTCGGGCCCTGCTCTGAACTGCCTAGGGATGAATTC
CTCGCCGTCTTCGCCGGCCTTGTCGCGGGGCCACGCATGGAAGAACTCCT
AGGCCTATTTAGGTCCAGTCAAAGCCACCCTGCTCTTCGGTATGCTTGCT
TGCTTGCGCTGCACGGTGCTGCCGAGTTGAGTGAGGAGCGTGAACTTATG
GTATCACACGCGGAGCTTCCATCGGCGCTTCTCTCGGCGATGGCATCCCC
TCAAAAACAGCTCATCACTCCTGAAACTGCGGGCGCGTCTGGGGCGCAGG
AGGTCAACACCGCGGCGGGCGCGATTACCACGATCGCCGGACTTTTCTCA
AGCAACAGCACGTTGGAGCCGAAATACGCCGAGCTCTGGGTAGGCCTCGG
TGCGGTTTCCGCCTTGGTGTCTTCCCTGGAAGGCCACGCGGCGTTCGACC
GGACTGTACCCGTGACCGGGGACCTCCCGTTGTGCTTTTTATTGGTGTCC
ACTTCTCTTCTGGCGGGAGCGGCAGACGCAGTGTCTGAAGAGGACAAAAT
TAGGCTTGGGACGGCCTGGCTGCAGCTGTTCGTCGACGCGAGGAGCTGGA
TCGCCCAAGAGGCGGGAGATCACCTCGCCGACTTTTACGTCCGCCCGAAT
TGGCTAAACGGCGTCGTCGACCAGATTCCAACTGAGGCCAGACAGAGGGC
GGTGGAAGCCGCGCGAAAGTCGGAGGCCGAAGGTACCTGGAAAAGCGGTC
GCGCGGATCATTTGGCGACGGCGTTGGGGCTAGCCTTGGGGAGACGGTGT
GCCGGACCAGGCTGTGTGAAGGACGGAGTAAAACGCTGCTCGCGATGTCA
GGGCGTGCGGTACTGCTCGATGGAGTGCCAGGCCGGGCACTGGCGAAAGG
GCCATCGAAAAGCGTGTACATCTGCTGCAGCTGTTCTTGCGTAGGTGCGG
AACTTGCTCGGGCCCTGCTCTGAACTGCCTAGGGATGAATTCCTCGCCGT
CTTCGCCGGCCTTGTCGCGGGGCCACGCATGGAAGAACTCCTAGGCCTAT
TTAGGTCCAGTCAAAGCCACCCTGCTCTTCGGTATGCTTGCTTGCTTGCG
CTGCACGGTGCTGCCGAGTTGAGTGAGGAGCGTGAACTTATGGTATCACA
CGCGGAGCTTCCATCGGCGCTTCTCTCGGCGATGGCATCCCCTCAAAAAC
AGCTCATCACTCCTGAAACTGCGGGCGCGTCTGGGGCGCAGGAGGTCAAC
ACCGCGGCGGGCGCGATTACCACGATCGCCGGACTTTTCTCAAGCAACAG
CACGTTGGAGCCGAAATACGCCGAGCTCTGGGTAGGCCTCGGTGCGGTTT
CCGCCTTGGTGTCTTCCCTGGAAGGCCACGCGGCGTTCGACCGGACTGTA
CCCGTGACCGGGGACCTCCCGTTGTGCTTTTTATTGGTGTCCACTTCTCT
TCTGGCGGGAGCGGCAGACGCAGTGTCTGAAGAGGACAAAATTAGGCTTG
GGACGGCCTGGCTGCAGCTGTTCGTCGACGCGAGGAGCTGGATCGCCCAA
GAGGCGGGAGATCACCTCGCCGACTTTTACGTCCGCCCGAATTGGCTAAA
CGGCGTCGTCGACCAGATTCCAACTGAGGCCAGACAGAGGGCGGTGGAAG
CCGCGCGAAAGTCGGAGGCCGAAGGTACCTGGAAAAGCGGTCGCGCGGAT
CATTTGGCGACGGCGTTGGGGCTAGCCTTGGGGAGACGGTGTGCCGGACC
AGGCTGTGTGAAGGACGGAGTAAAACGCTGCTCGCGATGTCAGGGCGTGC
GGTACTGCTCGATGGAGTGCCAGGCCGGGCACTGGCGAAAGGGCCATCGA
AAAGCGTGTACATCTGCTGCAGCTGTTCTTGCGTAG
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