mRNA_S-dermatodea_contig807.16257.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig807.16257.1
Unique NamemRNA_S-dermatodea_contig807.16257.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig807.16257.1 vs. uniprot
Match: D8LTG9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTG9_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 1.080e-5
Identity = 29/40 (72.50%), Postives = 31/40 (77.50%), Query Frame = 2 
Query:  206 PTSTQAVVEGIQLADLAGKRITDTEVAALAAGALTPLDLV 325
            PT   AVVE I+LADLAG RI DTEVAALAAG + P DLV
Sbjct:   11 PTGDPAVVEAIELADLAGARIKDTEVAALAAGVMAPSDLV 50
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig807.16257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTG9_ECTSI1.080e-572.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig807contigS-dermatodea_contig807:14020..15103 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size329
Cds size132
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig807.16257.1prot_S-dermatodea_contig807.16257.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig807 14020..14907 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925317.7992132-CDS-S-dermatodea_contig807:14019..140671622925317.7992132-CDS-S-dermatodea_contig807:14019..14067Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig807 14020..14067 -
1694079851.2112534-CDS-S-dermatodea_contig807:14019..140671694079851.2112534-CDS-S-dermatodea_contig807:14019..14067Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig807 14020..14067 -
1622925317.8112373-CDS-S-dermatodea_contig807:14823..149071622925317.8112373-CDS-S-dermatodea_contig807:14823..14907Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig807 14824..14907 -
1694079851.2242427-CDS-S-dermatodea_contig807:14823..149071694079851.2242427-CDS-S-dermatodea_contig807:14823..14907Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig807 14824..14907 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925317.8226695-UTR-S-dermatodea_contig807:14907..151031622925317.8226695-UTR-S-dermatodea_contig807:14907..15103Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig807 14908..15103 -
1694079851.2339303-UTR-S-dermatodea_contig807:14907..151031694079851.2339303-UTR-S-dermatodea_contig807:14907..15103Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig807 14908..15103 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig807.16257.1

>prot_S-dermatodea_contig807.16257.1 ID=prot_S-dermatodea_contig807.16257.1|Name=mRNA_S-dermatodea_contig807.16257.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=44bp
MALPTSTQAVVEGIQLADLAGKRITDTEVAALAAGALTPLDLVV
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mRNA from alignment at S-dermatodea_contig807:14020..15103-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig807.16257.1 ID=mRNA_S-dermatodea_contig807.16257.1|Name=mRNA_S-dermatodea_contig807.16257.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1084bp|location=Sequence derived from alignment at S-dermatodea_contig807:14020..15103- (Saccorhiza dermatodea SderLu1190fm monoicous)
ACCGTGTGGCCTCTACCGTGACAAGAGGTGCTACCGACACTATTGTCTTT
GGTCGAAGGACCTTAAGGTTCGTTGTCGTAGCTTACGGCGCGTCGAGGGG
GCACGAACAACCTAGCGGAAGAGGGATACCTTCTGTCTGCTGTGCGGTGG
TCTGGAGAGCAAAGCGGAGATCGTAGCGCCGAAGCAGTTTCGAGACATGG
CGCTCCCGACCAGCACGCAGGCGGTCGTGGAAGGCATCCAACTGGCAGAC
CTGGCGGGCAAGCGCATAACGGATACAGAGGTGAGCGGGAAGGCCGCACT
GCAGCATCACAGGATTTCTTTACCAACCAGACGAGATGGCTAAGTACGTG
CTGTTTTGGGTCGTCTCATGACCACCGAGACAACAATTGCAACAGCCAGT
TTTCGTATCTTTGTTCGTCCTTCTAGCCCATCAGACCAAAGGCACCCTCC
GCCCTATTCAAAATTTTACGAACAAACAGTACAACAGACAGTGGTTTTGA
GGCCGTCAAACAAAATGCAACCGTGCGTCCTCGCGGCTTCCTGTTTTGTG
CCTCGAGCCATTCGGAAACGCCAAGGCAGCGGGCCATGTTGAAAGTTGAA
CAAGTTGAAAGGCTCGTAAAGCAAAGGCGTGGGCGCCAGAGGGAGCAAAT
CACCACCAAAAGTTGGAAACTTTTGTGTAAGAGACAGACGACAGCCGCCG
CCCTCGACGCGTGCACTCTGAAAACGGCATGTCCGCAGAGCACCTCGCGC
AGCGCGACCCAGCTTCGCAATCGTCCGAAACCTCACACCCCTACGCAAAC
CCCCGGACTGGCACTCCACACAATTGCGTTACAGAGTATCAGAAATCTCT
CGGCTGGCCGAGCTCTGTTCATGTCAGCCCCCACGGCTGGTTCTGCGTGC
AGGTGGGATGATACTATCACATCATTACACACTCTCACGACCAGTAGTGT
ACCCACCCCAAATATCACATGTGTTACAGTACCATAGTCGCTGATCTCTC
GGCGCTGTCGTTCGTGGGCGGCTCTCGTCTCAAAAGGTGGCGGCGCTGGC
GGCGGGGGCCCTGACACCGCTCGATCTCGTCGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig807:14020..15103-

>mRNA_S-dermatodea_contig807.16257.1 ID=mRNA_S-dermatodea_contig807.16257.1|Name=mRNA_S-dermatodea_contig807.16257.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at S-dermatodea_contig807:14020..15103- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGCTCCCGACCAGCACGCAGGCGGTCGTGGAAGGCATCCAACTGGC
AGACCTGGCGGGCAAGCGCATAACGGATACAGAGATGGCGCTCCCGACCA
GCACGCAGGCGGTCGTGGAAGGCATCCAACTGGCAGACCTGGCGGGCAAG
CGCATAACGGATACAGAGGTGGCGGCGCTGGCGGCGGGGGCCCTGACACC
GCTCGATCTCGTCGTGGTGGCGGCGCTGGCGGCGGGGGCCCTGACACCGC
TCGATCTCGTCGTG
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