mRNA_S-dermatodea_contig80697.16252.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig80697.16252.1
Unique NamemRNA_S-dermatodea_contig80697.16252.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig80697.16252.1 vs. uniprot
Match: A0A8F0F7A9_9PHAE (Cytochrome f n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7A9_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 1.440e-62
Identity = 103/118 (87.29%), Postives = 111/118 (94.07%), Query Frame = 1
Query:    1 MKILKKTIKFILITFTVIINNLTVFVAVSQAYPIYAQQAYTNPRAANGRIACANCHLAEKPVQIESPKAVLPNKVFEAAVKIPYSKDAKQILGN*QLSSLNVGAVVILPEGFKLAPNN 354
            MK LKK ++FILI+FT I+N+ T  VA+SQAYPIYAQQAYTNPRAANGRIACANCHLAEKPVQI+SPKA+LPNKVFEAAVKIPYSKDAKQILGN QLSSLNVGAVVILPEGFKLAPNN
Sbjct:    1 MKTLKKVLQFILISFTFIVNSFTFSVAISQAYPIYAQQAYTNPRAANGRIACANCHLAEKPVQIDSPKAILPNKVFEAAVKIPYSKDAKQILGNGQLSSLNVGAVVILPEGFKLAPNN 118          
BLAST of mRNA_S-dermatodea_contig80697.16252.1 vs. uniprot
Match: A0A8F0FB28_9PHAE (Cytochrome f n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FB28_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 6.910e-58
Identity = 97/118 (82.20%), Postives = 108/118 (91.53%), Query Frame = 1
Query:    1 MKILKKTIKFILITFTVIINNLTVFVAVSQAYPIYAQQAYTNPRAANGRIACANCHLAEKPVQIESPKAVLPNKVFEAAVKIPYSKDAKQILGN*QLSSLNVGAVVILPEGFKLAPNN 354
            MK L++ +KFI+I+   I ++LT+ V +SQAYPIYAQQAYTNPRAANGR+ACANCHLAEKPVQIESPKAVLPNKVFEAAVKIPY+KDAKQILGN QLS LNVGAVVILPEGFKLAPNN
Sbjct:    1 MKTLRRIMKFIMISLVFISSSLTLSVKISQAYPIYAQQAYTNPRAANGRLACANCHLAEKPVQIESPKAVLPNKVFEAAVKIPYAKDAKQILGNGQLSGLNVGAVVILPEGFKLAPNN 118          
BLAST of mRNA_S-dermatodea_contig80697.16252.1 vs. uniprot
Match: A0A516ICS4_9PHAE (Cytochrome f n=32 Tax=Phaeophyceae TaxID=2870 RepID=A0A516ICS4_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 1.570e-56
Identity = 94/118 (79.66%), Postives = 108/118 (91.53%), Query Frame = 1
Query:    1 MKILKKTIKFILITFTVIINNLTVFVAVSQAYPIYAQQAYTNPRAANGRIACANCHLAEKPVQIESPKAVLPNKVFEAAVKIPYSKDAKQILGN*QLSSLNVGAVVILPEGFKLAPNN 354
            M++LK+ +KFI+I+F  II++L + V +S+AYPIYAQQAYTNPRAANGRIACANCHLAEKPVQIESPKA+LPNKVFEAAVKIPY+KDAKQ+L N QLS LNVGAVVILPEGFKLAP N
Sbjct:    1 MELLKRLMKFIMISFIFIISSLALSVKMSEAYPIYAQQAYTNPRAANGRIACANCHLAEKPVQIESPKAILPNKVFEAAVKIPYAKDAKQVLSNGQLSGLNVGAVVILPEGFKLAPKN 118          
BLAST of mRNA_S-dermatodea_contig80697.16252.1 vs. uniprot
Match: D1J7B1_ECTSI (Cytochrome f n=3 Tax=Ectocarpales TaxID=2877 RepID=D1J7B1_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 1.570e-56
Identity = 94/118 (79.66%), Postives = 107/118 (90.68%), Query Frame = 1
Query:    1 MKILKKTIKFILITFTVIINNLTVFVAVSQAYPIYAQQAYTNPRAANGRIACANCHLAEKPVQIESPKAVLPNKVFEAAVKIPYSKDAKQILGN*QLSSLNVGAVVILPEGFKLAPNN 354
            M++LK+ +KF +I+F  +I+++   + +S+AYPIYAQQ YTNPRAANGRIACANCHLAEKPVQIESPKAVLPNKVFEAAVKIPYSKDAKQILGN QLS LNVGAVVILPEGFKLAPNN
Sbjct:    1 MELLKRLMKFFIISFIFVISSIPFSMEMSEAYPIYAQQGYTNPRAANGRIACANCHLAEKPVQIESPKAVLPNKVFEAAVKIPYSKDAKQILGNGQLSGLNVGAVVILPEGFKLAPNN 118          
BLAST of mRNA_S-dermatodea_contig80697.16252.1 vs. uniprot
Match: A0A8F0F9U7_9PHAE (Cytochrome f n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9U7_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 1.570e-56
Identity = 93/118 (78.81%), Postives = 108/118 (91.53%), Query Frame = 1
Query:    1 MKILKKTIKFILITFTVIINNLTVFVAVSQAYPIYAQQAYTNPRAANGRIACANCHLAEKPVQIESPKAVLPNKVFEAAVKIPYSKDAKQILGN*QLSSLNVGAVVILPEGFKLAPNN 354
            M++L++ +K + I+F +II++ T+ + +SQAYPIYAQQAY NPRAANGRIACANCHLAEKPVQIESPKA+LPNKVFEAAVKIPY+KDAKQILGN QLS LNVGAVVILPEGFKLAPNN
Sbjct:    1 MQLLRRLVKILSISFILIISSFTLCIQMSQAYPIYAQQAYANPRAANGRIACANCHLAEKPVQIESPKAILPNKVFEAAVKIPYAKDAKQILGNGQLSGLNVGAVVILPEGFKLAPNN 118          
BLAST of mRNA_S-dermatodea_contig80697.16252.1 vs. uniprot
Match: A0A6B7F215_9PHAE (Cytochrome f n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7F215_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 1.570e-56
Identity = 93/118 (78.81%), Postives = 108/118 (91.53%), Query Frame = 1
Query:    1 MKILKKTIKFILITFTVIINNLTVFVAVSQAYPIYAQQAYTNPRAANGRIACANCHLAEKPVQIESPKAVLPNKVFEAAVKIPYSKDAKQILGN*QLSSLNVGAVVILPEGFKLAPNN 354
            M++L++ +KF +I+F  II+++   + +S+AYPIYAQQAYTNPRAANGRIACANCHLAEKPVQ+ESPKAVLPNKVFEAAVKIPY+KDAKQILGN QLS LNVGAVVILPEGFKLAPNN
Sbjct:    1 MELLRRLMKFFIISFIFIISSIPFSIKMSEAYPIYAQQAYTNPRAANGRIACANCHLAEKPVQVESPKAVLPNKVFEAAVKIPYAKDAKQILGNGQLSGLNVGAVVILPEGFKLAPNN 118          
BLAST of mRNA_S-dermatodea_contig80697.16252.1 vs. uniprot
Match: D1GJK5_FUCVE (Cytochrome f n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJK5_FUCVE)

HSP 1 Score: 180 bits (457), Expect = 4.060e-54
Identity = 91/117 (77.78%), Postives = 103/117 (88.03%), Query Frame = 1
Query:    1 MKILKKTIKFILITFTVIINNLTVFVAVSQAYPIYAQQAYTNPRAANGRIACANCHLAEKPVQIESPKAVLPNKVFEAAVKIPYSKDAKQILGN*QLSSLNVGAVVILPEGFKLAPN 351
            MKI K+ +K  +I+F  I + LT+ + +SQAYPIYAQQ+YTNPRAANGR+ACANCHLAEKP+QIESPKAVLPNKVFE AVKIPY +DAKQILGN QLS LNVGAVVILPEGFKLAPN
Sbjct:    1 MKICKRIMKMFMISFMFIFSFLTLSIEISQAYPIYAQQSYTNPRAANGRLACANCHLAEKPIQIESPKAVLPNKVFEVAVKIPYPQDAKQILGNGQLSGLNVGAVVILPEGFKLAPN 117          
BLAST of mRNA_S-dermatodea_contig80697.16252.1 vs. uniprot
Match: A0A6B9TMM8_SARFS (Cytochrome f n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A6B9TMM8_SARFS)

HSP 1 Score: 178 bits (451), Expect = 3.250e-53
Identity = 92/118 (77.97%), Postives = 103/118 (87.29%), Query Frame = 1
Query:    1 MKILKKTIKFILITFTVIINNLTVFVAVSQAYPIYAQQAYTNPRAANGRIACANCHLAEKPVQIESPKAVLPNKVFEAAVKIPYSKDAKQILGN*QLSSLNVGAVVILPEGFKLAPNN 354
            MKILKK +K +LI+F +I  + T     SQAYPIYAQQAY NPRAANGR+ACANCHLAEKP+QIESPKA+LPNKVFEAAVKIPY ++AKQILGN QLS LNVGAVVILPEGFKLAP+N
Sbjct:    1 MKILKKIMKILLISFMLIHISFTFSCKDSQAYPIYAQQAYANPRAANGRLACANCHLAEKPIQIESPKAILPNKVFEAAVKIPYPREAKQILGNGQLSGLNVGAVVILPEGFKLAPSN 118          
BLAST of mRNA_S-dermatodea_contig80697.16252.1 vs. uniprot
Match: A0A2I4Q308_9PHAE (Cytochrome f n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q308_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 2.140e-51
Identity = 84/113 (74.34%), Postives = 100/113 (88.50%), Query Frame = 1
Query:   16 KTIKFILITFTVIINNLTVFVAVSQAYPIYAQQAYTNPRAANGRIACANCHLAEKPVQIESPKAVLPNKVFEAAVKIPYSKDAKQILGN*QLSSLNVGAVVILPEGFKLAPNN 354
            + +K+ L+   ++I++LTV +  S+AYPIYAQQAYTNPRAANGRIACANCHLAEKP++IE+PKA+LPN VFE A+KIPY+KDAKQILGN QLS LNVGAVVILPEGFKLAP N
Sbjct:    7 RILKYFLLNSILVISSLTVSITNSEAYPIYAQQAYTNPRAANGRIACANCHLAEKPIEIEAPKAILPNSVFETAIKIPYAKDAKQILGNGQLSGLNVGAVVILPEGFKLAPKN 119          
BLAST of mRNA_S-dermatodea_contig80697.16252.1 vs. uniprot
Match: A0A8E5XRH3_9PHAE (Cytochrome f n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRH3_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 1.310e-50
Identity = 91/122 (74.59%), Postives = 104/122 (85.25%), Query Frame = 1
Query:    1 MKILKK----TIKFILITFTVIINNLTVFVAVSQAYPIYAQQAYTNPRAANGRIACANCHLAEKPVQIESPKAVLPNKVFEAAVKIPYSKDAKQILGN*QLSSLNVGAVVILPEGFKLAPNN 354
            MKIL+K    T+K I+++ + +  +   F   SQAYPIYAQQAY NPRAANGRIACANCHLAEKPVQIESPK++LPNKVF+A VKIPY+KDAKQILGN QLSSLNVGAVVILPEGFKLAP+N
Sbjct:    1 MKILRKKLETTLKIIILSCSFMSLSFGFFNYTSQAYPIYAQQAYNNPRAANGRIACANCHLAEKPVQIESPKSILPNKVFDAIVKIPYAKDAKQILGNGQLSSLNVGAVVILPEGFKLAPSN 122          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig80697.16252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0F7A9_9PHAE1.440e-6287.29Cytochrome f n=1 Tax=Protohalopteris sp. TaxID=284... [more]
A0A8F0FB28_9PHAE6.910e-5882.20Cytochrome f n=1 Tax=Desmarestia aculeata TaxID=62... [more]
A0A516ICS4_9PHAE1.570e-5679.66Cytochrome f n=32 Tax=Phaeophyceae TaxID=2870 RepI... [more]
D1J7B1_ECTSI1.570e-5679.66Cytochrome f n=3 Tax=Ectocarpales TaxID=2877 RepID... [more]
A0A8F0F9U7_9PHAE1.570e-5678.81Cytochrome f n=1 Tax=Chorda asiatica TaxID=1281577... [more]
A0A6B7F215_9PHAE1.570e-5678.81Cytochrome f n=1 Tax=Cladosiphon okamuranus TaxID=... [more]
D1GJK5_FUCVE4.060e-5477.78Cytochrome f n=3 Tax=Fucaceae TaxID=3010 RepID=D1G... [more]
A0A6B9TMM8_SARFS3.250e-5377.97Cytochrome f n=14 Tax=Sargassaceae TaxID=3014 RepI... [more]
A0A2I4Q308_9PHAE2.140e-5174.34Cytochrome f n=1 Tax=Dictyopteris divaricata TaxID... [more]
A0A8E5XRH3_9PHAE1.310e-5074.59Cytochrome f n=1 Tax=Ishige okamurae TaxID=233772 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig80697contigS-dermatodea_contig80697:1..354 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.9
Seed ortholog evalue2.4e-33
Seed eggNOG ortholog2880.D1J7B1
Preferred namepetA
KEGG koko:K02634
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00162
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0016020,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
EggNOG free text desc.photosynthesis
EggNOG OGs2CMAK@1,2QPT8@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194
Hectar predicted targeting categorysignal peptide
Exons1
Model size354
Cds size285
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925317.4816709-UTR-S-dermatodea_contig80697:0..691622925317.4816709-UTR-S-dermatodea_contig80697:0..69Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig80697 1..69 -
1694079850.9967368-UTR-S-dermatodea_contig80697:0..691694079850.9967368-UTR-S-dermatodea_contig80697:0..69Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig80697 1..69 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925317.4955814-CDS-S-dermatodea_contig80697:69..3541622925317.4955814-CDS-S-dermatodea_contig80697:69..354Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80697 70..354 -
1694079851.0100355-CDS-S-dermatodea_contig80697:69..3541694079851.0100355-CDS-S-dermatodea_contig80697:69..354Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80697 70..354 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig80697.16252.1prot_S-dermatodea_contig80697.16252.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig80697 70..354 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig80697.16252.1

>prot_S-dermatodea_contig80697.16252.1 ID=prot_S-dermatodea_contig80697.16252.1|Name=mRNA_S-dermatodea_contig80697.16252.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=95bp
MKILKKTIKFILITFTVIINNLTVFVAVSQAYPIYAQQAYTNPRAANGRI
ACANCHLAEKPVQIESPKAVLPNKVFEAAVKIPYSKDAKQILGN*
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mRNA from alignment at S-dermatodea_contig80697:1..354-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig80697.16252.1 ID=mRNA_S-dermatodea_contig80697.16252.1|Name=mRNA_S-dermatodea_contig80697.16252.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=354bp|location=Sequence derived from alignment at S-dermatodea_contig80697:1..354- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAAATTTTGAAAAAAACAATAAAATTTATATTGATAACCTTTACTGT AATTATTAACAATTTAACAGTTTTTGTTGCAGTTTCACAAGCATATCCAA TATATGCACAACAAGCTTATACAAATCCACGAGCAGCAAATGGTCGAATT GCTTGTGCCAATTGTCATTTAGCAGAAAAACCTGTACAAATAGAATCTCC AAAAGCAGTATTACCTAATAAAGTATTTGAGGCTGCGGTAAAAATTCCTT ATTCTAAAGATGCTAAACAAATTTTAGGAAATTGACAGTTAAGTAGTTTG AATGTTGGAGCAGTAGTTATCTTACCTGAAGGTTTTAAATTAGCCCCTAA TAAT
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Coding sequence (CDS) from alignment at S-dermatodea_contig80697:1..354-

>mRNA_S-dermatodea_contig80697.16252.1 ID=mRNA_S-dermatodea_contig80697.16252.1|Name=mRNA_S-dermatodea_contig80697.16252.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at S-dermatodea_contig80697:1..354- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAAATTTTGAAAAAAACAATAAAATTTATATTGATAACCTTTACTGT
AATTATTAACAATTTAACAGTTTTTGTTGCAGTTTCACAAGCATATCCAA
TATATGCACAACAAGCTTATACAAATCCACGAGCAGCAAATGGTCGAATT
GCTTGTGCCAATTGTCATTTAGCAGAAAAACCTGTACAAATAGAATCTCC
AAAAGCAGTATTACCTAATAAAGTATTTGAGGCTGCGGTAAAAATTCCTT
ATTCTAAAGATGCTAAACAAATTTTAGGAAATTGAATGAAAATTTTGAAA
AAAACAATAAAATTTATATTGATAACCTTTACTGTAATTATTAACAATTT
AACAGTTTTTGTTGCAGTTTCACAAGCATATCCAATATATGCACAACAAG
CTTATACAAATCCACGAGCAGCAAATGGTCGAATTGCTTGTGCCAATTGT
CATTTAGCAGAAAAACCTGTACAAATAGAATCTCCAAAAGCAGTATTACC
TAATAAAGTATTTGAGGCTGCGGTAAAAATTCCTTATTCTAAAGATGCTA
AACAAATTTTAGGAAATTGA
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