mRNA_S-dermatodea_contig8064.16248.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8064.16248.1
Unique NamemRNA_S-dermatodea_contig8064.16248.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig8064.16248.1 vs. uniprot
Match: A0A8H6XNL4_9AGAR (ATP-dependent DNA helicase n=1 Tax=Mycena sanguinolenta TaxID=230812 RepID=A0A8H6XNL4_9AGAR)

HSP 1 Score: 60.5 bits (145), Expect = 1.080e-8
Identity = 34/80 (42.50%), Postives = 45/80 (56.25%), Query Frame = 1
Query:   31 WNPCKYPLLLYWGSSGWS-QGYFKESPPKTSQTLSTTIKVVKIWHYARQRLLYEPVFRILSRVAQEWAVDMFSRQEENRL 267
            W P  YPLL   G+ GW   G  +++        +  I   ++WHY R RLL EP F+I  R+A E+ VDMFSR  E+RL
Sbjct:  238 WEPLSYPLLFPHGTLGWGIVGSTRDNRLDEPLDPNADIPTTQMWHY-RARLLREPRFQIFGRLANEYIVDMFSRDLESRL 316          
BLAST of mRNA_S-dermatodea_contig8064.16248.1 vs. uniprot
Match: A0A146H922_MYCCL (Helicase (Fragment) n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H922_MYCCL)

HSP 1 Score: 60.5 bits (145), Expect = 1.090e-8
Identity = 33/79 (41.77%), Postives = 40/79 (50.63%), Query Frame = 1
Query:   31 WNPCKYPLLLYWGSSGWSQGYFKESPPKTSQTLSTTIKVVKIWHYARQRLLYEPVFRILSRVAQEWAVDMFSRQEENRL 267
            W P  YPLL   G+ GW     + +           I   ++WHY R RLL EP F I  R+A E+ VDMFSR  E RL
Sbjct:  322 WEPLSYPLLFPHGTLGWGISDQRPAALADDAGADADIPTTQMWHY-RARLLREPRFSIFGRLANEYIVDMFSRNLETRL 399          
BLAST of mRNA_S-dermatodea_contig8064.16248.1 vs. uniprot
Match: A0A409X4U5_9AGAR (Uncharacterized protein n=1 Tax=Panaeolus cyanescens TaxID=181874 RepID=A0A409X4U5_9AGAR)

HSP 1 Score: 59.3 bits (142), Expect = 2.370e-8
Identity = 35/91 (38.46%), Postives = 48/91 (52.75%), Query Frame = 1
Query:    1 RLGIPYSTQPWNPCKYPLLLYWGSSGWSQGYFKESPPKTSQTLSTTIK--VVKIWHYARQRLLYEPVFRILSRVAQEWAVDMFSRQEENRL 267
             + IP +++ W P  YPL     + GW  G  +  P     + +  +     +IWHY R RLL E  F IL R+A E+ VDMFSR  E+RL
Sbjct:  222 NVSIPTTSRMWEPLAYPLFFPHATLGW--GLHESDPTGVGNSNNHQLGDGTTQIWHY-RARLLREDRFSILGRLANEYLVDMFSRNLESRL 309          
BLAST of mRNA_S-dermatodea_contig8064.16248.1 vs. uniprot
Match: A0A146H2E9_MYCCL (ATP-dependent DNA helicase n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H2E9_MYCCL)

HSP 1 Score: 59.3 bits (142), Expect = 2.820e-8
Identity = 32/79 (40.51%), Postives = 41/79 (51.90%), Query Frame = 1
Query:   31 WNPCKYPLLLYWGSSGWSQGYFKESPPKTSQTLSTTIKVVKIWHYARQRLLYEPVFRILSRVAQEWAVDMFSRQEENRL 267
            W P  YPLL   G+ GW           T       +   ++W+Y R RLL EP F+I  R+A E+ VDMFSR  E+RL
Sbjct:  236 WEPLSYPLLFPHGTLGWGVRDHGPDANLTDPNPDADLPTTQMWYY-RARLLREPRFQIFGRLANEYMVDMFSRDLESRL 313          
BLAST of mRNA_S-dermatodea_contig8064.16248.1 vs. uniprot
Match: A0A146HYG3_MYCCL (ATP-dependent DNA helicase n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146HYG3_MYCCL)

HSP 1 Score: 59.3 bits (142), Expect = 2.850e-8
Identity = 32/79 (40.51%), Postives = 41/79 (51.90%), Query Frame = 1
Query:   31 WNPCKYPLLLYWGSSGWSQGYFKESPPKTSQTLSTTIKVVKIWHYARQRLLYEPVFRILSRVAQEWAVDMFSRQEENRL 267
            W P  YPLL   G+ GW           T       +   ++W+Y R RLL EP F+I  R+A E+ VDMFSR  E+RL
Sbjct:  593 WEPLSYPLLFPHGTLGWGVRDHGPDANLTDPNPDADLPTTQMWYY-RARLLREPRFQIFGRLANEYMVDMFSRDLESRL 670          
BLAST of mRNA_S-dermatodea_contig8064.16248.1 vs. uniprot
Match: A0A0C3ALS3_9AGAM (ATP-dependent DNA helicase (Fragment) n=1 Tax=Scleroderma citrinum Foug A TaxID=1036808 RepID=A0A0C3ALS3_9AGAM)

HSP 1 Score: 57.4 bits (137), Expect = 1.330e-7
Identity = 39/100 (39.00%), Postives = 47/100 (47.00%), Query Frame = 1
Query:   10 IPYSTQPWNPCKYPLLLYWGSSGWSQ--------------GYFKESPPKTSQTLSTTIKVVKIWHYARQRLLYEPVFRILSRVAQEWAVDMFSRQEENRL 267
            IP  ++ W P  YPLL   G+ GW                G      P T+Q          +WHY R RLL EP F+I  R+A E+AVDMFSR  E RL
Sbjct:  220 IPTVSRLWEPLAYPLLFPHGTPGWGLIDRHIDSTDLENLVGNDGPDEPPTTQ----------MWHY-RARLLREPRFKIFGRLANEYAVDMFSRDLECRL 308          
BLAST of mRNA_S-dermatodea_contig8064.16248.1 vs. uniprot
Match: S7PVR1_GLOTA (Uncharacterized protein (Fragment) n=1 Tax=Gloeophyllum trabeum (strain ATCC 11539 / FP-39264 / Madison 617) TaxID=670483 RepID=S7PVR1_GLOTA)

HSP 1 Score: 53.1 bits (126), Expect = 2.550e-6
Identity = 36/94 (38.30%), Postives = 45/94 (47.87%), Query Frame = 1
Query:    1 RLGIPYSTQPWNPCKYPLLLYWGSSGWS---QGYFKESPPKTSQTLSTT--IKVVKIWHYARQRLLYEPVFRILSRVAQEWAVDMFSRQEENRL 267
             + IP  ++ W P  YPLL   G+ GW     G       +    LS        +IWHY R RLL E  F I  R+A E+ VDMF+R  E RL
Sbjct:  133 NIPIPTVSRLWEPLAYPLLFPHGTLGWGVVGDGRDLRHDQREHGLLSAEHDSPTSQIWHY-RARLLREERFHIFGRLANEYIVDMFTRNLECRL 225          
BLAST of mRNA_S-dermatodea_contig8064.16248.1 vs. uniprot
Match: A0A8H6UTW9_9EURO (Helitron_like_N domain-containing protein n=1 Tax=Aspergillus hiratsukae TaxID=1194566 RepID=A0A8H6UTW9_9EURO)

HSP 1 Score: 52.0 bits (123), Expect = 1.010e-5
Identity = 34/86 (39.53%), Postives = 45/86 (52.33%), Query Frame = 1
Query:   10 IPYSTQPWNPCKYPLLLYWGSSGWSQGYFKESPPKTSQTLSTTIKVVKIWHYARQRLLYEPVFRILSRVAQEWAVDMFSRQEENRL 267
            +P  +  + P +YPLL   G+ GW  GY  +            +   +I  Y R   L EP F+IL R+A E+AVDMFSR EE RL
Sbjct:  305 VPVLSCLYEPLQYPLLFPHGTRGW--GYIND--------FQKALPCTQIQWY-RHLFLSEPRFQILGRLACEYAVDMFSRTEEERL 379          
BLAST of mRNA_S-dermatodea_contig8064.16248.1 vs. uniprot
Match: A0A4Y9ZWN2_9AGAM (Uncharacterized protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZWN2_9AGAM)

HSP 1 Score: 52.0 bits (123), Expect = 1.040e-5
Identity = 32/80 (40.00%), Postives = 45/80 (56.25%), Query Frame = 1
Query:   31 WNPCKYPLLLYWGSSGWSQGY-FKESPPKTSQTLSTTIKVVKIWHYARQRLLYEPVFRILSRVAQEWAVDMFSRQEENRL 267
            + P +YP+L   G+ GW+      +    T+ T S T  + +IW Y R   L E  F    R+AQE+AVDMFSR +E+RL
Sbjct:  325 YEPLQYPILFPHGTLGWTPPLNVHDDDDITADTDSPTSHISQIWLY-RGYFLREECFLRFGRLAQEYAVDMFSRVQESRL 403          
BLAST of mRNA_S-dermatodea_contig8064.16248.1 vs. uniprot
Match: A0A8H6PH95_9EURO (Helitron_like_N domain-containing protein n=1 Tax=Aspergillus hiratsukae TaxID=1194566 RepID=A0A8H6PH95_9EURO)

HSP 1 Score: 50.4 bits (119), Expect = 3.710e-5
Identity = 33/86 (38.37%), Postives = 44/86 (51.16%), Query Frame = 1
Query:   10 IPYSTQPWNPCKYPLLLYWGSSGWSQGYFKESPPKTSQTLSTTIKVVKIWHYARQRLLYEPVFRILSRVAQEWAVDMFSRQEENRL 267
            +P  +  + P +YPLL   G+ GW  GY  +            +   +I  Y R   L EP F+I  R+A E+AVDMFSR EE RL
Sbjct:  535 VPILSCLYEPLQYPLLFPHGTRGW--GYIND--------FQKALPCTQIQWY-RHLFLSEPRFQIFGRLACEYAVDMFSRTEEERL 609          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8064.16248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A8H6XNL4_9AGAR1.080e-842.50ATP-dependent DNA helicase n=1 Tax=Mycena sanguino... [more]
A0A146H922_MYCCL1.090e-841.77Helicase (Fragment) n=1 Tax=Mycena chlorophos TaxI... [more]
A0A409X4U5_9AGAR2.370e-838.46Uncharacterized protein n=1 Tax=Panaeolus cyanesce... [more]
A0A146H2E9_MYCCL2.820e-840.51ATP-dependent DNA helicase n=1 Tax=Mycena chloroph... [more]
A0A146HYG3_MYCCL2.850e-840.51ATP-dependent DNA helicase n=1 Tax=Mycena chloroph... [more]
A0A0C3ALS3_9AGAM1.330e-739.00ATP-dependent DNA helicase (Fragment) n=1 Tax=Scle... [more]
S7PVR1_GLOTA2.550e-638.30Uncharacterized protein (Fragment) n=1 Tax=Gloeoph... [more]
A0A8H6UTW9_9EURO1.010e-539.53Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A4Y9ZWN2_9AGAM1.040e-540.00Uncharacterized protein n=1 Tax=Hericium alpestre ... [more]
A0A8H6PH95_9EURO3.710e-538.37Helitron_like_N domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8064contigS-dermatodea_contig8064:9159..9425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size267
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925317.2435727-CDS-S-dermatodea_contig8064:9158..94251622925317.2435727-CDS-S-dermatodea_contig8064:9158..9425Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8064 9159..9425 -
1694079850.8418972-CDS-S-dermatodea_contig8064:9158..94251694079850.8418972-CDS-S-dermatodea_contig8064:9158..9425Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8064 9159..9425 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8064.16248.1prot_S-dermatodea_contig8064.16248.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8064 9159..9425 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8064.16248.1

>prot_S-dermatodea_contig8064.16248.1 ID=prot_S-dermatodea_contig8064.16248.1|Name=mRNA_S-dermatodea_contig8064.16248.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=89bp
RLGIPYSTQPWNPCKYPLLLYWGSSGWSQGYFKESPPKTSQTLSTTIKVV
KIWHYARQRLLYEPVFRILSRVAQEWAVDMFSRQEENRL
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mRNA from alignment at S-dermatodea_contig8064:9159..9425-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8064.16248.1 ID=mRNA_S-dermatodea_contig8064.16248.1|Name=mRNA_S-dermatodea_contig8064.16248.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=267bp|location=Sequence derived from alignment at S-dermatodea_contig8064:9159..9425- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGTTTGGGGATACCCTACTCAACACAACCTTGGAATCCTTGCAAATACCC TCTGCTGCTGTACTGGGGATCAAGTGGATGGTCGCAAGGATATTTCAAAG AATCGCCACCCAAAACATCCCAAACTCTTTCGACGACGATTAAAGTCGTT AAGATTTGGCACTACGCCCGGCAACGCCTCCTGTACGAACCTGTGTTCCG CATACTTTCCCGTGTAGCACAAGAATGGGCAGTGGATATGTTTTCCAGGC AAGAAGAAAACCGCTTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8064:9159..9425-

>mRNA_S-dermatodea_contig8064.16248.1 ID=mRNA_S-dermatodea_contig8064.16248.1|Name=mRNA_S-dermatodea_contig8064.16248.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at S-dermatodea_contig8064:9159..9425- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGTTTGGGGATACCCTACTCAACACAACCTTGGAATCCTTGCAAATACCC
TCTGCTGCTGTACTGGGGATCAAGTGGATGGTCGCAAGGATATTTCAAAG
AATCGCCACCCAAAACATCCCAAACTCTTTCGACGACGATTAAAGTCGTT
AAGATTTGGCACTACGCCCGGCAACGCCTCCTGTACGAACCTGTGTTCCG
CATACTTTCCCGTGTAGCACAAGAATGGGCAGTGGATATGTTTTCCAGGC
AAGAAGAAAACCGCTTGCGTTTGGGGATACCCTACTCAACACAACCTTGG
AATCCTTGCAAATACCCTCTGCTGCTGTACTGGGGATCAAGTGGATGGTC
GCAAGGATATTTCAAAGAATCGCCACCCAAAACATCCCAAACTCTTTCGA
CGACGATTAAAGTCGTTAAGATTTGGCACTACGCCCGGCAACGCCTCCTG
TACGAACCTGTGTTCCGCATACTTTCCCGTGTAGCACAAGAATGGGCAGT
GGATATGTTTTCCAGGCAAGAAGAAAACCGCTTG
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