mRNA_S-dermatodea_contig8060.16246.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8060.16246.1
Unique NamemRNA_S-dermatodea_contig8060.16246.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig8060.16246.1 vs. uniprot
Match: A0A6H5KUU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU7_9PHAE)

HSP 1 Score: 399 bits (1026), Expect = 1.470e-137
Identity = 205/277 (74.01%), Postives = 226/277 (81.59%), Query Frame = 1
Query:    1 LRRRAATAPLFCASQTSDVAATEAKQEASGGHGHGVRKQKP----------PKVDKNSFVQWDMRRAAMKLHTRAQSPKEGKQENKGAALADWQPSRRGYLQFLVDSRAVYTALEEACSSDPRLAQFRATGLERTEALTKDIAWMLDTYSDASSSGEVGGEGGAPVPTDNASEYASFLRETVASSVPAFMCHYYNHYFAHTAGGRMIGRKVADSCLEGRTLEFYKWGEDDVKVLLDSVRQRIDVMAKEWSAEEKEACVAETGRTFEYGGRLLSSITS 801
            LRRRAA  PL+C SQT+DVAAT          G G +K++           PK DKNSFVQWDMRRAAMKLHTR QSPKEGKQENKG   +DW+PSRRGYLQFLVDS+ VY ALEEAC SDPRLA+FR TGLERTEALTKDIAWML+TYSD+ + G  GG+G AP PT+NA EYASFLRE VASS+PAFMCHYYNHYFAHTAGGRMIGRKVA+SCL+GRTLEFY+WG DDVKVLLD VR +ID MAK WS EEKEACV+ET RTF+YGG LLSSITS
Sbjct:   56 LRRRAAAVPLWCTSQTTDVAATA--------EGKGAKKEEXXXXXXXGGVKPKTDKNSFVQWDMRRAAMKLHTRDQSPKEGKQENKGTPFSDWKPSRRGYLQFLVDSKVVYEALEEACGSDPRLAEFRNTGLERTEALTKDIAWMLETYSDSWAEGG-GGDGKAPSPTENALEYASFLREKVASSLPAFMCHYYNHYFAHTAGGRMIGRKVAESCLDGRTLEFYQWGADDVKVLLDGVRVKIDAMAKGWSEEEKEACVSETARTFKYGGSLLSSITS 323          
BLAST of mRNA_S-dermatodea_contig8060.16246.1 vs. uniprot
Match: D7FK52_ECTSI (Heme oxygenase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK52_ECTSI)

HSP 1 Score: 363 bits (933), Expect = 6.430e-122
Identity = 192/278 (69.06%), Postives = 211/278 (75.90%), Query Frame = 1
Query:    4 RRRAATAPLFCASQTSDVAATEAKQEASGGHGH------GVRKQKPPKVDKNSFVQWDMRRAAMKLHTRAQSPKEGKQENKGAALADWQPSRRGYLQFLVDSRAVYTALEEACSSDPRLAQFRATGLERTEALTKDIAWMLDTYSDASSSGEVGGEGGAPVPTDNASEYASFLRETVASSVPAFMCHYYNHYFAHTAGGRMIGRKVA------------------DSCLEGRTLEFYKWGEDDVKVLLDSVRQRIDVMAKEWSAEEKEACVAETGRTF 765
            RRRAA  PL+C SQT+DVAAT   + A    G       GV+    PK DKNSFVQWDMRRAAMKLHTR QSPKEGKQENKG   +DW+PSRRGYLQFLVDS+ VY ALEEAC SDPRLA+FR TGLERTEALTKDIAWML+ Y D+ + G  GG+G AP PT+NA EYASFLRE VAS++P FMCHYYNHYFAHTAGGRMIGRKVA                  DSCL+GRTLEFY+WG DDVKVLLD VR +ID MAK WS EEKEACV+ET RTF
Sbjct:   57 RRRAAAVPLWCTSQTTDVAATAEGKGAKKEEGXXXXXXGGVK----PKTDKNSFVQWDMRRAAMKLHTRDQSPKEGKQENKGTKFSDWKPSRRGYLQFLVDSKVVYEALEEACGSDPRLAEFRNTGLERTEALTKDIAWMLEAYPDSWAEGG-GGDGKAPSPTENALEYASFLREKVASTLPGFMCHYYNHYFAHTAGGRMIGRKVAESALGVFFKHVSAFPFRSDSCLDGRTLEFYQWGSDDVKVLLDGVRVKIDAMAKGWSEEEKEACVSETARTF 329          
BLAST of mRNA_S-dermatodea_contig8060.16246.1 vs. uniprot
Match: A0A835Z600_9STRA (Heme oxygenase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z600_9STRA)

HSP 1 Score: 260 bits (664), Expect = 3.820e-84
Identity = 130/224 (58.04%), Postives = 159/224 (70.98%), Query Frame = 1
Query:  127 KVDKNSFVQWDMRRAAMKLHTRAQSPKEGKQENKGAALADWQPSRRGYLQFLVDSRAVYTALEEACSSDPRLAQFRATGLERTEALTKDIAWMLDTYSDASSSGEVGGEGGAPVPTDNASEYASFLRETVASSVPAFMCHYYNHYFAHTAGGRMIGRKVADSCLEGRTLEFYKWGEDDVKVLLDSVRQRIDVMAKEWSAEEKEACVAETGRTFEYGGRLLSSIT 798
            K D NSFVQ +MR  AMKLHTR Q+P+EG+QE  G   A+W P+R GYLQFLVDSRAVY+  +E   ++  LA  R TGLERT AL KDIAWML+TY + ++          P  +DNA+ Y +FL++  A SVP F+CH+YNHYFAHTAGG MIG+KVAD CL G+ L FY+W  D V+ LLD+VR  ID MA  WS EEK+ C+ ET RTF+YGG LL SIT
Sbjct:    3 KADPNSFVQGEMRGVAMKLHTRDQAPREGQQEETGKKFAEWAPTRAGYLQFLVDSRAVYSTFDEVVGANDALAALRDTGLERTAALEKDIAWMLETYPELAT----------PPVSDNAAAYCAFLKDIAAKSVPGFVCHFYNHYFAHTAGGIMIGKKVADLCLGGQKLAFYQWASD-VRALLDAVRVNIDAMADGWSREEKDECLDETARTFKYGGSLLGSIT 215          
BLAST of mRNA_S-dermatodea_contig8060.16246.1 vs. uniprot
Match: A0A8J5XQF0_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XQF0_DIALT)

HSP 1 Score: 212 bits (539), Expect = 2.860e-65
Identity = 116/221 (52.49%), Postives = 152/221 (68.78%), Query Frame = 1
Query:  145 FVQWDMRRAAMKLHTRAQSPKEGKQENKGAALADWQPSRRGYLQFLVDSRAVYTALEEACSSDPRLAQFRATGLERTEALTKDIAWMLDTYSDASSSGEVGGEGGAP--VPTDNASEYASFLRETVASSVPAFMCHYYNHYFAHTAGGRMIGRKVADSCLEGRTLEFYKWGEDDVKVLLDSVRQRIDVMAKEWSAEEKEACVAETGRTFEYGGRLLSSITS 801
            FVQ +MR+AAM LHTR Q+ KEG+Q+ +   LA W+P+R+GYLQFLVDSR VY A+EE       LA  + TGLERT AL KDIAW L              EGG     PT+ A+ YA+ L+     S PAF+CH+YN+YFAHTAGGRMIG++++D  L+GR LEFYKW + DVK LLD+ RQ ID MA  W+ +E++AC+A+T  +F+ GG L++S+ S
Sbjct:   11 FVQTEMRKAAMALHTRDQA-KEGQQQAQ-KPLAKWEPTRKGYLQFLVDSRHVYGAVEEIVGERAELATLKNTGLERTVALDKDIAWFLSD------------EGGCQPTTPTEAATGYAAELKRL---STPAFICHFYNYYFAHTAGGRMIGKQMSDMLLDGRVLEFYKW-DGDVKELLDAARQHIDAMAASWTQDERDACLAQTAASFKGGGGLMASLRS 213          
BLAST of mRNA_S-dermatodea_contig8060.16246.1 vs. uniprot
Match: A0A6V1QVP2_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QVP2_HETAK)

HSP 1 Score: 207 bits (527), Expect = 7.170e-63
Identity = 112/219 (51.14%), Postives = 145/219 (66.21%), Query Frame = 1
Query:  142 SFVQWDMRRAAMKLHTRAQSPKEGKQENKGAALADWQPSRRGYLQFLVDSRAVYTALEEACSSDPRLAQFRATGLERTEALTKDIAWMLDTYSDASSSGEVGGEGGAPVPTDNASEYASFLRETVASSVPAFMCHYYNHYFAHTAGGRMIGRKVADSCLEGRTLEFYKWGEDDVKVLLDSVRQRIDVMAKEWSAEEKEACVAETGRTFEYGGRLLSSIT 798
            SFVQ DMR  AMKLHT+ Q+ +EG+Q+ +   ++ W P    YLQFLVDSR VY  +E+ C+S P L +F+ TGLERT AL +DIAWM + +S    +    G+G           YA  LRE V  S+P F+CHYYNHYFAHTAGG MIGRK++++ LEG TLEFYKW   DVK +  +V + ID +A  WS  +K+ C+ ETG TF YGG LLS ++
Sbjct:   47 SFVQNDMRAYAMKLHTKDQA-REGEQKAQ-KPVSKWSPEPINYLQFLVDSRLVYQTMEDICNSTPGLEKFQNTGLERTAALDQDIAWMSEKFSVDVPAASPLGQG-----------YADVLREVVGRSLPGFVCHYYNHYFAHTAGGLMIGRKISEALLEGATLEFYKWA-GDVKEMGMAVIRDIDALADTWSDAQKQECLEETGNTFRYGGALLSHLS 251          
BLAST of mRNA_S-dermatodea_contig8060.16246.1 vs. uniprot
Match: A0A7S2CA11_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CA11_9STRA)

HSP 1 Score: 207 bits (526), Expect = 7.920e-63
Identity = 114/228 (50.00%), Postives = 144/228 (63.16%), Query Frame = 1
Query:  139 NSFVQWDMRRAAMKLHTRAQSPKEG-KQENKGAALADWQPSRRGYLQFLVDSRAVYTALEEACSSDPRLAQFRATGLERTEALTKDIAWMLDTYSDASSSGEVGGEGGAPVPTDNASE----YASFLRETVASS---VPAFMCHYYNHYFAHTAGGRMIGRKVADSCLEGRTLEFYKWGEDDVKVLLDSVRQRIDVMAKE-WSAEEKEACVAETGRTFEYGGRLLSSI 795
            + FV  +MR  AMKLHTR+Q+PKEG K+E K A +  W+P+R GYLQFLVDSR VYTALEE C+S P L  FR TGLER  AL  DI  M      A         G  P+P  +  E    YA+FLR+         P F+CHYYN YFAH+AGGRMIGRK+++  L+G  LEFY+W +D  +VLL +V   ID    E W+ E+K+ C+ ET ++F+ GG LLS I
Sbjct:   29 SKFVSAEMRPTAMKLHTRSQAPKEGQKEETKEAPMMKWEPTREGYLQFLVDSRHVYTALEEICASRPELEPFRDTGLERVAALNTDIEGMASGAIPA---------GSDPIPVPDVGEPGSTYAAFLRDMADGEGELAPEFICHYYNFYFAHSAGGRMIGRKMSEMLLDGHELEFYQWKDDVKEVLLPAVADDIDKYVLENWTREQKDLCLGETAKSFQMGGALLSHI 247          
BLAST of mRNA_S-dermatodea_contig8060.16246.1 vs. uniprot
Match: A0A7R9TEH2_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TEH2_9VIRI)

HSP 1 Score: 198 bits (504), Expect = 9.410e-60
Identity = 107/213 (50.23%), Postives = 136/213 (63.85%), Query Frame = 1
Query:  157 DMRRAAMKLHTRAQSPKEGKQENKGAALADWQPSRRGYLQFLVDSRAVYTALEEACSSDPR---LAQFRATGLERTEALTKDIAWMLDTYSDASSSGEVGGEGGAPVPTDNASEYASFLRETVASSVPAFMCHYYNHYFAHTAGGRMIGRKVADSCLEGRTLEFYKWGEDDVKVLLDSVRQRIDVMAKEWSAEEKEACVAETGRTFEYGGRLL 786
            +MR  AMKLHT+ Q+PKEG+ E     ++ W+P+R  Y Q+LVDS+ VY ALEE  +S P    LA F++TGLER  AL KD+ +    Y              AP PT+  S YA+FLRE  AS VP FMCHYYN YFAHTAGGR IG+ ++D  L+G+ LEFY W E  +K  +D VR  I+ MA+ WS EEK AC+ ET  +F+Y G LL
Sbjct:   26 EMRAYAMKLHTKEQAPKEGQAEEPSKPMSKWEPTRELYAQYLVDSKVVYDALEEVVASAPADSPLAVFQSTGLERGPALAKDLEFFESEYGIK-----------APEPTEAGSGYAAFLREKAASDVPGFMCHYYNVYFAHTAGGRQIGKMLSDMVLDGKKLEFYSW-EGVLKDHMDGVRGSINSMAEGWSEEEKTACLEETAPSFKYAGTLL 226          
BLAST of mRNA_S-dermatodea_contig8060.16246.1 vs. uniprot
Match: A0A0M0JY97_9EUKA (Heme oxygenase 1 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JY97_9EUKA)

HSP 1 Score: 198 bits (503), Expect = 3.660e-59
Identity = 105/220 (47.73%), Postives = 137/220 (62.27%), Query Frame = 1
Query:  142 SFVQWDMRRAAMKLHTRAQSPKEGKQENKGAALADWQPSRRGYLQFLVDSRAVYTALEEACSSDPRLAQFRATGLERTEALTKDIAWMLDTYSDASSSGEVGGEGGAPVPTDNASEYASFLRETVASS-VPAFMCHYYNHYFAHTAGGRMIGRKVADSCLEGRTLEFYKWGEDDVKVLLDSVRQRIDVMAKEWSAEEKEACVAETGRTFEYGGRLLSSIT 798
            SFVQ +MR AAM LHTR Q+P+EGKQ  +   ++ WQP+R  YLQFLVDSR VY  LEE        A FRA+GLER  AL KDIAW   T+ +             P        YA+ LR+ VA   +  F+CH+YN YFAHTAGGRMIG+++A   L+G TLEFY+W  D  +VLL  +R +ID +   WS E+K+ C+AET  +F+ GG ++  I+
Sbjct:   52 SFVQTEMRGAAMALHTRDQAPREGKQPAQ-RPMSSWQPTRADYLQFLVDSRKVYRTLEEIVEETEMFASFRASGLERGAALDKDIAWFAATHGEKE-----------PAVKSQGETYAAELRKMVADGELERFVCHFYNFYFAHTAGGRMIGKRMAGMLLDGHTLEFYQWDGDVDQVLLPGLRTKIDALVAGWSREQKDKCLAETANSFKGGGAMMQHIS 259          
BLAST of mRNA_S-dermatodea_contig8060.16246.1 vs. uniprot
Match: C1E2W1_MICCC (Heme oxygenase n=2 Tax=Micromonas TaxID=38832 RepID=C1E2W1_MICCC)

HSP 1 Score: 196 bits (499), Expect = 3.540e-58
Identity = 105/226 (46.46%), Postives = 146/226 (64.60%), Query Frame = 1
Query:  133 DKNSFVQWDMRRAAMKLHTRAQSPKEGKQE--NKGAALADWQPSRRGYLQFLVDSRAVYTALEE--ACSSDPRLAQFRATGLERTEALTKDIAWMLDTYSDASSSGEVGGEGGAPVPTDNASEYASFLRETVASSVPAFMCHYYNHYFAHTAGGRMIGRKVADSCLEGRTLEFYKWGEDD-VKVLLDSVRQRIDVMAKEWSAEEKEACVAETGRTFEYGGRLLSSI 795
            +K  FV+ +MR  AM++HTR Q+PKEGK E   +   +A WQP+R GYL+FLV+S+AVY A+E   A  + P    F  TGLER E L KDI W   TY         G E  APV     +EYASFLR+   +S P F+CH+YN YFAH+AGGRMIGRKV++  L+G+ L+FY+W +   +  ++   + +++  A++WS EEK+ C+ ETG++FE  G+LL  I
Sbjct:   79 EKKGFVE-EMRFVAMRMHTREQAPKEGKAEPAKEAKPMAQWQPTREGYLRFLVESKAVYDAMEAIVASGASPMYGDFVDTGLERAEGLAKDIEWFCQTY---------GME--APVADGPGAEYASFLRDISKTSPPEFICHFYNVYFAHSAGGRMIGRKVSEMILDGKELQFYRWDKPGGLDAMMTRTKAKLNDAAEKWSREEKDRCLEETGKSFELSGKLLRLI 292          
BLAST of mRNA_S-dermatodea_contig8060.16246.1 vs. uniprot
Match: A0A482RZJ1_9ARCH (Biliverdin-producing heme oxygenase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RZJ1_9ARCH)

HSP 1 Score: 194 bits (493), Expect = 1.480e-57
Identity = 105/218 (48.17%), Postives = 146/218 (66.97%), Query Frame = 1
Query:  142 SFVQWDMRRAAMKLHTRAQSPKEGKQENKGAALADWQPSRRGYLQFLVDSRAVYTALEEACSSDPRLAQFRATGLERTEALTKDIAWMLDTYSDASSSGEVGGEGGAPVPTDNASEYASFLRETVASSVPAFMCHYYNHYFAHTAGGRMIGRKVADSCLEGRTLEFYKWGEDDVKVLLDSVRQRIDVMAKEWSAEEKEACVAETGRTFEYGGRLLSSI 795
            SFVQ +M+  +MKLHTR Q+ +EG+Q  +      W+PSR+ Y QFLVDS  VY AL+        LA FR TGLERTEAL KDI WM  +Y  +     +  +G  P+    A +YA  LR   A S+P F+CHYYNHYFAHTAGGRMIG+K+    L+G +L+FY+W + D+KVL++  + +ID++A  WSA++K+AC+ ET   F+YGG ++++I
Sbjct:   62 SFVQDEMKPYSMKLHTRDQA-REGEQPAQ-TPFTVWEPSRQDYFQFLVDSLVVYEALDSIVDQYEVLAPFRHTGLERTEALKKDIIWM-QSYDPS-----IKHKGSGPL----AKKYAEVLRGLAAQSIPKFICHYYNHYFAHTAGGRMIGKKMCTMLLDGHSLKFYEW-DGDMKVLIEQTKHQIDLLALTWSAQDKKACLEETLACFKYGGDVMAAI 266          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8060.16246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUU7_9PHAE1.470e-13774.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK52_ECTSI6.430e-12269.06Heme oxygenase 1 n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A835Z600_9STRA3.820e-8458.04Heme oxygenase-like protein n=1 Tax=Tribonema minu... [more]
A0A8J5XQF0_DIALT2.860e-6552.49Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A6V1QVP2_HETAK7.170e-6351.14Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S2CA11_9STRA7.920e-6350.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7R9TEH2_9VIRI9.410e-6050.23Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
A0A0M0JY97_9EUKA3.660e-5947.73Heme oxygenase 1 n=1 Tax=Chrysochromulina tobinii ... [more]
C1E2W1_MICCC3.540e-5846.46Heme oxygenase n=2 Tax=Micromonas TaxID=38832 RepI... [more]
A0A482RZJ1_9ARCH1.480e-5748.17Biliverdin-producing heme oxygenase n=1 Tax=archae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8060contigS-dermatodea_contig8060:4613..7586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score319.7
Seed ortholog evalue1e-84
Seed eggNOG ortholog2880.D7FK52
Preferred nameHY1
KEGG rclassRC01270
KEGG koko:K21480
KEGG ReactionR11579
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
EggNOG free text desc.heme oxidation
EggNOG OGsCOG5398@1,KOG4480@2759
EC1.14.15.20
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionheme oxygenase 1
Ec32 orthologEc-04_005790.1
Exons4
Model size833
Cds size645
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8060.16246.1prot_S-dermatodea_contig8060.16246.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8060 4642..7134 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925317.0528603-UTR-S-dermatodea_contig8060:4612..46411622925317.0528603-UTR-S-dermatodea_contig8060:4612..4641Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8060 4613..4641 -
1694079850.7036252-UTR-S-dermatodea_contig8060:4612..46411694079850.7036252-UTR-S-dermatodea_contig8060:4612..4641Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8060 4613..4641 -
1622925317.105914-UTR-S-dermatodea_contig8060:7134..71621622925317.105914-UTR-S-dermatodea_contig8060:7134..7162Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8060 7135..7162 -
1694079850.7495477-UTR-S-dermatodea_contig8060:7134..71621694079850.7495477-UTR-S-dermatodea_contig8060:7134..7162Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8060 7135..7162 -
1622925317.1152234-UTR-S-dermatodea_contig8060:7455..75861622925317.1152234-UTR-S-dermatodea_contig8060:7455..7586Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8060 7456..7586 -
1694079850.759668-UTR-S-dermatodea_contig8060:7455..75861694079850.759668-UTR-S-dermatodea_contig8060:7455..7586Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8060 7456..7586 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925317.0645447-CDS-S-dermatodea_contig8060:4641..48341622925317.0645447-CDS-S-dermatodea_contig8060:4641..4834Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8060 4642..4834 -
1694079850.7165089-CDS-S-dermatodea_contig8060:4641..48341694079850.7165089-CDS-S-dermatodea_contig8060:4641..4834Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8060 4642..4834 -
1622925317.0817485-CDS-S-dermatodea_contig8060:5471..58221622925317.0817485-CDS-S-dermatodea_contig8060:5471..5822Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8060 5472..5822 -
1694079850.7282047-CDS-S-dermatodea_contig8060:5471..58221694079850.7282047-CDS-S-dermatodea_contig8060:5471..5822Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8060 5472..5822 -
1622925317.0963488-CDS-S-dermatodea_contig8060:7033..71341622925317.0963488-CDS-S-dermatodea_contig8060:7033..7134Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8060 7034..7134 -
1694079850.738636-CDS-S-dermatodea_contig8060:7033..71341694079850.738636-CDS-S-dermatodea_contig8060:7033..7134Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8060 7034..7134 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8060.16246.1

>prot_S-dermatodea_contig8060.16246.1 ID=prot_S-dermatodea_contig8060.16246.1|Name=mRNA_S-dermatodea_contig8060.16246.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=215bp
MRRAAMKLHTRAQSPKEGKQENKGAALADWQPSRRGYLQFLVDSRAVYTA
LEEACSSDPRLAQFRATGLERTEALTKDIAWMLDTYSDASSSGEVGGEGG
APVPTDNASEYASFLRETVASSVPAFMCHYYNHYFAHTAGGRMIGRKVAD
SCLEGRTLEFYKWGEDDVKVLLDSVRQRIDVMAKEWSAEEKEACVAETGR
TFEYGGRLLSSITS*
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mRNA from alignment at S-dermatodea_contig8060:4613..7586-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8060.16246.1 ID=mRNA_S-dermatodea_contig8060.16246.1|Name=mRNA_S-dermatodea_contig8060.16246.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2974bp|location=Sequence derived from alignment at S-dermatodea_contig8060:4613..7586- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTCAGGCGCAGGGCCGCAACGGCGCCGCTGTTTTGCGCCTCGCAGACGAG CGACGTCGCTGCGACGGAGGCGAAACAGGAGGCAAGCGGCGGGCACGGGC ACGGCGTTCGCAAGCAGAAGCCGCCGAAAGTGTGAGTGTAACTTGGTGTT GCACGTATGGCGACTGCTAGCGCTTTTCGTGATACGCGGATACAGGTAGA TACGATACCCCGGGTGCTTGGGGTGCGAGGCGTTTGGGTGGCGTGGTGTG GTGTGGGGTACAGCTAAGGGCGATGTGTCCCTGTACCATACATACTGTAT TGTACTGATGAAAACTTGAGCGCTCCTCGTGTTCTCTTGGGTTACACGAG GGTTGTCTGTCAAATTTCGGAGAGTTGTAATGACAATTTTACGCCCCCCC CCGGTCCCCGCTCGGCTTCCGCAGGGACAAAAACTCGTTCGTTCAGTGGG ACATGCGCCGGGCCGCGATGAAGCTGCACACTCGCGCCCAGTCACCGAAG GAGGGTAAGCAGGAGAACAAGGGTGCCGCGTTAGCCGATTGGCAACCTTC GAGGTGATGCGTTTGACGATTCCAAGGAAGGGGCGTGGTATTGTACAGGG TCGCTATTGCCCCGAGCGTTGCTTGCTGAGGCACGTGTTGCGACCTTGAG ACCAGGGTTGATTGCGGAGGCTTCAGGCCACAGGCTACTCCACGGGGAAT TTGGGTCTCAGAAGACCCGTACTCTAGCCTGGCCATCTCCGCGTTTCATC GATCGCCTCCTGGGCGTACTCGGGAGCGAGCGCGGTGATTTCTTGCTGGT GGAGGGCGCTTGCTTTGTGTAGAGGGGGGGGAGAGATGCCGTTCCGGATG GGCTCCCGTTTCATGTCTCCAGCAGATACATATTGCCAGGCAAACACCGG AGGTTGTAGCGGTGTGTCCGCAGCGTATTTCCACGGACGAAACGACAGAG TACGGGTTTTGCTCCCAGGAGGACCTGCCACTTATTTTGAATTGTGAAAG CTTGCAAGCGCCCCCGGTGAACCCCTCGTCCAGATGTCACAAAATCGGGA TGCGTAAAAGAACTTACAAACTTGATGTTGAGGGGGTTCTTGGCTTGGGA ATATTCCTCTTGGTCAATGCTGTACAATGGTCAAGGGGCTGTGTGGGGGT TACGGCGTGTAAGTGGTGCACGACGTGGTCGGTGCGTTTGTATATATATT TCCCTCCGATGGAAATAATCCTGACTACGTAAGTTTCGGGAGTAGGTGCG AAGTCAGTGAGGAGAGCGGCCCCCTGCGGATCGACGCAGGCACCGCAGTG CTAGCCGCTGTGCCACCCGCTATGCTAGCGCTGCTGTACGGCAGGCCTCT TTTGCGTTGCCAGTAATGGCAAGGACTGCTTTATGCAGCAGTAGATCGGG GGCCACCGACTACCTCAACGCCGTTCAGCGAGGCCACCGATCCGCCTGCG GTGAATTGGCGGCTCCTCCGCCTGCGGCGAATCGGCAGCTCCCGTCTGTT GGCCTTTGACAATTGCGGCCAAAAAGCTGTCTGTAGTTCCGAGAGCGAGG TGAAGCAGAACCTTCTCGGTATTCTGCATTTCGTTCTACAGGGCTCCACG AAGCACCACACCGCGTGGGCACACACTTCAAGCACACCCTTAAGAGCGTT GCCGTCGAAGAGTGGTCTCCTATTACATGTGTTTAATTTGTATGTTTTCT TTTTTGCCCATCGTGTTTCCTCTTGTCCCCCGTGCCCACCCACCCGTATT TTCGCTCTCGACAGACGAGGGTATCTGCAGTTTCTGGTGGACTCCAGAGC GGTGTACACGGCGTTAGAAGAGGCGTGCTCGTCGGACCCTCGACTCGCGC AATTTCGGGCCACGGGTCTCGAGAGGACCGAGGCGTTAACGAAAGACATC GCGTGGATGCTGGATACGTACTCGGATGCCTCTTCTTCTGGGGAGGTTGG GGGGGAGGGGGGGGCACCGGTCCCCACGGATAACGCGTCGGAGTACGCGT CGTTTTTGCGGGAGACCGTTGCTTCGAGCGTCCCGGCGTTCATGTGCCAT TATTACAACCACTATTTTGCGCACACGGCTGGGGGGAGGATGATCGGGCG CAAGGTGGCGGATAGGTGAGGTTGGACTGCGTGCTGGTAGTTGCGATTTT CCGACTGGGCGAGTGTGGGGGCCACGAGCACGATACGTGTTTGCGTGTGT GTGTTTGCGGGTGGTGTGCCTTACTGTTTTTAATGTATTGTGGGCGCATG CAGATGGAGAAGGGTACTGAAGAGAGGGTGGACAGAAATAGTGAAATAGT GGAAGGACAAGCTCTGATGTCGAAGGTGCACGTCTGTAGTGCTCGAGCTG TTTGCCGGGTCCTGCCATAACGCGCTCCTCTGTGCTTACGCCGAATCCCA CCGTGCCAAACTGTAGGGCAGAGTGCCATCCCACGCGGACCTCTGTCGCC CAAGAAAGCGTGGAAGACAGTGTTACTATCTTGCTAAAAGACTGGTGGAA GATGTAGCCTTTTTTCTCCGCGTGCCCTTCACGCTGGCCAGATAATTTTT CGATGCGGTTCTCTCGCTCCTCTTGCCACCCGTCCTCCTCCACCCCGGCA TTGATGCTTTTGATGTCGAGGCCAATCAACGTCTCGAGGTCGGCGTGCCG CCTCTTATTTCGAGGTCTGGCGATGTATCTATCTCCTCTGTTGCACACCT TGTCTTAACCTTTTCCTCGCTTCCGCTTTCGTGTCGCATCCTGCGATGGC AGCTGCCTTGAAGGGCGCACTCTGGAGTTCTACAAGTGGGGAGAGGACGA CGTAAAGGTCTTGCTGGACTCGGTGCGTCAACGGATAGATGTGATGGCAA AGGAGTGGAGCGCGGAGGAGAAGGAGGCGTGCGTGGCGGAGACAGGGCGA ACTTTCGAGTACGGGGGGCGCCTCCTGTCGAGCATAACTTCGTGATTTGT CGGCGGTGGGGGCGGAGGCGGGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8060:4613..7586-

>mRNA_S-dermatodea_contig8060.16246.1 ID=mRNA_S-dermatodea_contig8060.16246.1|Name=mRNA_S-dermatodea_contig8060.16246.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1290bp|location=Sequence derived from alignment at S-dermatodea_contig8060:4613..7586- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGCCGGGCCGCGATGAAGCTGCACACTCGCGCCCAGTCACCGAAGGA
GGGTAAGCAGGAGAACAAGGGTGCCGCGTTAGCCGATTGGCAACCTTCGA
GATGCGCCGGGCCGCGATGAAGCTGCACACTCGCGCCCAGTCACCGAAGG
AGGGTAAGCAGGAGAACAAGGGTGCCGCGTTAGCCGATTGGCAACCTTCG
AGACGAGGGTATCTGCAGTTTCTGGTGGACTCCAGAGCGGTGTACACGGC
GTTAGAAGAGGCGTGCTCGTCGGACCCTCGACTCGCGCAATTTCGGGCCA
CGGGTCTCGAGAGGACCGAGGCGTTAACGAAAGACATCGCGTGGATGCTG
GATACGTACTCGGATGCCTCTTCTTCTGGGGAGGTTGGGGGGGAGGGGGG
GGCACCGGTCCCCACGGATAACGCGTCGGAGTACGCGTCGTTTTTGCGGG
AGACCGTTGCTTCGAGCGTCCCGGCGTTCATGTGCCATTATTACAACCAC
TATTTTGCGCACACGGCTGGGGGGAGGATGATCGGGCGCAAGGTGGCGGA
TAGACGAGGGTATCTGCAGTTTCTGGTGGACTCCAGAGCGGTGTACACGG
CGTTAGAAGAGGCGTGCTCGTCGGACCCTCGACTCGCGCAATTTCGGGCC
ACGGGTCTCGAGAGGACCGAGGCGTTAACGAAAGACATCGCGTGGATGCT
GGATACGTACTCGGATGCCTCTTCTTCTGGGGAGGTTGGGGGGGAGGGGG
GGGCACCGGTCCCCACGGATAACGCGTCGGAGTACGCGTCGTTTTTGCGG
GAGACCGTTGCTTCGAGCGTCCCGGCGTTCATGTGCCATTATTACAACCA
CTATTTTGCGCACACGGCTGGGGGGAGGATGATCGGGCGCAAGGTGGCGG
ATAGCTGCCTTGAAGGGCGCACTCTGGAGTTCTACAAGTGGGGAGAGGAC
GACGTAAAGGTCTTGCTGGACTCGGTGCGTCAACGGATAGATGTGATGGC
AAAGGAGTGGAGCGCGGAGGAGAAGGAGGCGTGCGTGGCGGAGACAGGGC
GAACTTTCGAGTACGGGGGGCGCCTCCTGTCGAGCATAACTTCGTGACTG
CCTTGAAGGGCGCACTCTGGAGTTCTACAAGTGGGGAGAGGACGACGTAA
AGGTCTTGCTGGACTCGGTGCGTCAACGGATAGATGTGATGGCAAAGGAG
TGGAGCGCGGAGGAGAAGGAGGCGTGCGTGGCGGAGACAGGGCGAACTTT
CGAGTACGGGGGGCGCCTCCTGTCGAGCATAACTTCGTGA
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