mRNA_S-dermatodea_contig8058.16242.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8058.16242.1
Unique NamemRNA_S-dermatodea_contig8058.16242.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8058.16242.1 vs. uniprot
Match: D7FRG6_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG6_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 2.160e-39
Identity = 75/125 (60.00%), Postives = 87/125 (69.60%), Query Frame = 1 
Query:    1 MGGSVVTIEGGIFTHNEAQELGGAIMAWGTTTVXXXXXXXXXXXXXXXXXXFVFLEEGASLLCEGATILENYAGDQGGGIYARDATWVKSSCDLLGNESPQGAAAYLTYVANNATFENLDITDNV 375
            +GGS VT+EGG FT N A ELGGA +AWGT TV                  F+FLEE ASL CEGATI ++YAGDQGGGIY RDATWV SSCDL+GN +PQGAA YLT+    A F+N ++TDNV
Sbjct:  416 LGGSQVTVEGGRFTDNRALELGGAFVAWGTPTVLTITGGFFSNNTAKFYGGFIFLEEEASLSCEGATIRDHYAGDQGGGIYGRDATWVNSSCDLIGNAAPQGAAVYLTHTVMAANFDNHEVTDNV 540
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BLAST of mRNA_S-dermatodea_contig8058.16242.1 vs. uniprot
Match: A0A6H5JS31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS31_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 4.780e-26
Identity = 52/74 (70.27%), Postives = 60/74 (81.08%), Query Frame = 1 
Query:  154 FVFLEEGASLLCEGATILENYAGDQGGGIYARDATWVKSSCDLLGNESPQGAAAYLTYVANNATFENLDITDNV 375
            F+FLEE ASL CEGATI ++YAGDQGGGIY RDATWV SSCDL+GN +PQGAA YLT+    A F N ++TDNV
Sbjct:  510 FIFLEEEASLSCEGATIRDHYAGDQGGGIYGRDATWVNSSCDLIGNAAPQGAAVYLTHTVMAANFTNHEVTDNV 583
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BLAST of mRNA_S-dermatodea_contig8058.16242.1 vs. uniprot
Match: D7FRH1_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH1_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 6.450e-26
Identity = 60/122 (49.18%), Postives = 73/122 (59.84%), Query Frame = 1 
Query:   10 SVVTIEGGIFTHNEAQELGGAIMAWGTTTVXXXXXXXXXXXXXXXXXXFVFLEEGASLLCEGATILENYAGDQGGGIYARDATWVKSSCDLLGNESPQGAAAYLTYVANNATFENLDITDNV 375
            +VVT+ GG F +N A+  GG                            F+FLEE ASL CEGATI ++ AGDQGGGIY RDA WV SSCDL+GN +PQGAA YLT+    A F+N ++TDNV
Sbjct:  137 NVVTVTGGYFVNNTAKFYGG----------------------------FIFLEEEASLSCEGATIRDHSAGDQGGGIYGRDAAWVNSSCDLIGNAAPQGAAVYLTHTVMAANFDNHEVTDNV 230
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BLAST of mRNA_S-dermatodea_contig8058.16242.1 vs. uniprot
Match: D7FRH4_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH4_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 6.860e-24
Identity = 71/98 (72.45%), Postives = 79/98 (80.61%), Query Frame = 1 
Query:   76 MAWGTTTVXXXXXXXXXXXXXXXXXXFVFLEEGASLLCEGATILENYAGDQGGGIYARDATWVKSSCDLLGNESPQGAAAYLTYVANNATFENLDITD 369
            +AWG TTV XXXXXXXXXXXXXXXXXF+FLEE ASL CEGA +  N AGDQGGGIYARDATWV SSCDL+ N++PQGAAAYLT     A F+N  + D
Sbjct:  486 VAWGDTTVVXXXXXXXXXXXXXXXXXFIFLEEEASLSCEGAIVQANTAGDQGGGIYARDATWVNSSCDLICNQAPQGAAAYLTSTVQVANFQNHTVFD 583
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BLAST of mRNA_S-dermatodea_contig8058.16242.1 vs. uniprot
Match: D7FRH3_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH3_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 4.420e-23
Identity = 69/101 (68.32%), Postives = 78/101 (77.23%), Query Frame = 1 
Query:   73 IMAWGTTTVXXXXXXXXXXXXXXXXXXFVFLEEGASLLCEGATILENYAGDQGGGIYARDATWVKSSCDLLGNESPQGAAAYLTYVANNATFENLDITDNV 375
            + AWGT TV XXXXXXXXXXXXXXXX F+FLEE ASL CEGA +  N AGDQGGGIYARDATWV SSCDLL NE+PQGAAA+ T +   A  ++  +T  V
Sbjct:  480 VAAWGTPTVVXXXXXXXXXXXXXXXXGFIFLEEEASLSCEGAFVQGNTAGDQGGGIYARDATWVNSSCDLLHNEAPQGAAAFFTNIVEAANLQSHTVTHTV 580
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BLAST of mRNA_S-dermatodea_contig8058.16242.1 vs. uniprot
Match: D7FRH0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRH0_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 1.120e-22
Identity = 60/122 (49.18%), Postives = 72/122 (59.02%), Query Frame = 1 
Query:   10 SVVTIEGGIFTHNEAQELGGAIMAWGTTTVXXXXXXXXXXXXXXXXXXFVFLEEGASLLCEGATILENYAGDQGGGIYARDATWVKSSCDLLGNESPQGAAAYLTYVANNATFENLDITDNV 375
            +VVTI+GG+F +N A   GG                            FV LEE ASL CEGATI +N AGD+GGGIYA  + WV SSCDL+GN +PQGAA YLT V + A FE  ++TDNV
Sbjct:  525 TVVTIKGGVFRNNSANFYGG----------------------------FVHLEEEASLTCEGATIEDNNAGDKGGGIYAETSVWVNSSCDLIGNGAPQGAATYLTGVTS-ANFEAHNVTDNV 617
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8058.16242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FRG6_ECTSI2.160e-3960.00Polymorphic membrane protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JS31_9PHAE4.780e-2670.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRH1_ECTSI6.450e-2649.18Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7FRH4_ECTSI6.860e-2472.45Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7FRH3_ECTSI4.420e-2368.32Polymorphic membrane protein n=1 Tax=Ectocarpus si... [more]
D7FRH0_ECTSI1.120e-2249.18Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8058contigS-dermatodea_contig8058:4704..5881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size376
Cds size375
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925316.8828452-CDS-S-dermatodea_contig8058:4703..48431622925316.8828452-CDS-S-dermatodea_contig8058:4703..4843Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8058 4704..4843 +
1694079850.6370993-CDS-S-dermatodea_contig8058:4703..48431694079850.6370993-CDS-S-dermatodea_contig8058:4703..4843Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8058 4704..4843 +
1622925316.892676-CDS-S-dermatodea_contig8058:5646..58811622925316.892676-CDS-S-dermatodea_contig8058:5646..5881Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8058 5647..5881 +
1694079850.647392-CDS-S-dermatodea_contig8058:5646..58811694079850.647392-CDS-S-dermatodea_contig8058:5646..5881Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8058 5647..5881 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8058.16242.1prot_S-dermatodea_contig8058.16242.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8058 4704..5881 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8058.16242.1

>prot_S-dermatodea_contig8058.16242.1 ID=prot_S-dermatodea_contig8058.16242.1|Name=mRNA_S-dermatodea_contig8058.16242.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=125bp
MGGSVVTIEGGIFTHNEAQELGGAIMAWGTTTVVTVKGGFFSNNTAKFYG
GFVFLEEGASLLCEGATILENYAGDQGGGIYARDATWVKSSCDLLGNESP
QGAAAYLTYVANNATFENLDITDNV
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mRNA from alignment at S-dermatodea_contig8058:4704..5881+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8058.16242.1 ID=mRNA_S-dermatodea_contig8058.16242.1|Name=mRNA_S-dermatodea_contig8058.16242.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1178bp|location=Sequence derived from alignment at S-dermatodea_contig8058:4704..5881+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGCGGTTCGGTGGTAACTATCGAGGGCGGGATTTTCACACACAACGA
GGCGCAGGAATTGGGAGGAGCAATCATGGCGTGGGGCACCACTACCGTGG
TTACGGTCAAGGGCGGATTCTTCTCCAACAATACCGCGAAGTGAGCTTGA
GTTTGCCCCGTGTGAATCTCCGCCCTCCCCGAGCATGGGGTGCAGAGATA
TGTCCAGACACATTGCATAAAACCTGGAAATAGGTGCTGCGGTTTTATAT
TGGTGGTAGCTCACGACGTTGGTAGGATGTGCTATTAATATATACTCGAC
CTGGTCGTTCCGGATGTGTGTTTCGAGGAATTTGGCTGGGAGCAGAAGAC
GACTTGAAGAACCCGTCCCCCTCCGCCCCCCCCCTCCATGCACGACTTCC
TTCGGAAAGCGTGAAGCGCTATGATGTGTACAATCGGTATTCAAAGACCT
GTGTAGCTGATGCACGGTTGAGAAACCCGTCTTGCATCTACACGTCCTAT
TTTGAGCGAGACGTATGATAGAGCTGTGCACCGATAACAACCAGCGAGCT
GCGGGAGTGCTGGCTGAACCCAACGCGTGATGAAAGTTGTTGGAAGAAGG
GAACAAATACGCCCGAAAACCGAGGGCTGCCCGCAGTTTTATCATGGAGT
TTGAAGGGAACGTGAAAAGTAAAACGTTTAGGCAGGCAGGCAGGCAGGCA
GGCAGCAGGGCAGTGCTGCCACCTCTATCTACCCCATGCGCATCGACGTG
GTCCAGAAACTGGTGTTGTTGGTAGAGGCGATTGCACCCCGTTGCCAAGC
CTAACGAATCTTGCAAGCGCCGCGATGCACCTGCGAGACGCGCCAAACGC
GTGGTCGACCCCCCATCCTCTTGGCACGAATAGAGCTGCACCCACCGGCG
CGCTGAAAGTCGACCGCGCCTCTCTCTGCCCGGTCGCGGCCAGGTTCTAT
GGAGGTTTCGTGTTTCTAGAGGAAGGAGCCAGCCTCTTGTGCGAGGGTGC
CACCATCCTGGAGAACTACGCTGGTGACCAAGGCGGGGGCATCTACGCCC
GAGACGCCACCTGGGTTAAATCCAGCTGCGACCTGCTCGGCAACGAGTCG
CCTCAAGGCGCGGCCGCCTACCTGACCTACGTCGCAAACAACGCAACGTT
CGAGAACCTCGACATCACCGACAACGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8058:4704..5881+

>mRNA_S-dermatodea_contig8058.16242.1 ID=mRNA_S-dermatodea_contig8058.16242.1|Name=mRNA_S-dermatodea_contig8058.16242.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at S-dermatodea_contig8058:4704..5881+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGCGGTTCGGTGGTAACTATCGAGGGCGGGATTTTCACACACAACGA
GGCGCAGGAATTGGGAGGAGCAATCATGGCGTGGGGCACCACTACCGTGG
TTACGGTCAAGGGCGGATTCTTCTCCAACAATACCGCGAAATGGGCGGTT
CGGTGGTAACTATCGAGGGCGGGATTTTCACACACAACGAGGCGCAGGAA
TTGGGAGGAGCAATCATGGCGTGGGGCACCACTACCGTGGTTACGGTCAA
GGGCGGATTCTTCTCCAACAATACCGCGAAGTTCTATGGAGGTTTCGTGT
TTCTAGAGGAAGGAGCCAGCCTCTTGTGCGAGGGTGCCACCATCCTGGAG
AACTACGCTGGTGACCAAGGCGGGGGCATCTACGCCCGAGACGCCACCTG
GGTTAAATCCAGCTGCGACCTGCTCGGCAACGAGTCGCCTCAAGGCGCGG
CCGCCTACCTGACCTACGTCGCAAACAACGCAACGTTCGAGAACCTCGAC
ATCACCGACAACGTGGTTCTATGGAGGTTTCGTGTTTCTAGAGGAAGGAG
CCAGCCTCTTGTGCGAGGGTGCCACCATCCTGGAGAACTACGCTGGTGAC
CAAGGCGGGGGCATCTACGCCCGAGACGCCACCTGGGTTAAATCCAGCTG
CGACCTGCTCGGCAACGAGTCGCCTCAAGGCGCGGCCGCCTACCTGACCT
ACGTCGCAAACAACGCAACGTTCGAGAACCTCGACATCACCGACAACGTG
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