mRNA_S-dermatodea_contig8052.16234.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8052.16234.1
Unique NamemRNA_S-dermatodea_contig8052.16234.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8052.16234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8052contigS-dermatodea_contig8052:486..2729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size353
Cds size351
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925316.340103-CDS-S-dermatodea_contig8052:485..5601622925316.340103-CDS-S-dermatodea_contig8052:485..560Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8052 486..560 +
1694079850.2629404-CDS-S-dermatodea_contig8052:485..5601694079850.2629404-CDS-S-dermatodea_contig8052:485..560Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8052 486..560 +
1622925316.3528473-CDS-S-dermatodea_contig8052:2453..27291622925316.3528473-CDS-S-dermatodea_contig8052:2453..2729Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8052 2454..2729 +
1694079850.2766023-CDS-S-dermatodea_contig8052:2453..27291694079850.2766023-CDS-S-dermatodea_contig8052:2453..2729Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8052 2454..2729 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8052.16234.1prot_S-dermatodea_contig8052.16234.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8052 486..2729 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8052.16234.1

>prot_S-dermatodea_contig8052.16234.1 ID=prot_S-dermatodea_contig8052.16234.1|Name=mRNA_S-dermatodea_contig8052.16234.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=117bp
MGWPGGCGYWGTVVAATLMMVLPPQALAWFPPHSTLPSRSTDWRRSSLAG
TTPPSAITDGVAIEDAATTTARHAAIHDHPASDTATTATALGTTSSLLLD
ANPTMASKGIADEGVAV
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mRNA from alignment at S-dermatodea_contig8052:486..2729+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8052.16234.1 ID=mRNA_S-dermatodea_contig8052.16234.1|Name=mRNA_S-dermatodea_contig8052.16234.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2244bp|location=Sequence derived from alignment at S-dermatodea_contig8052:486..2729+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGCTGGCCTGGAGGATGCGGGTACTGGGGAACGGTCGTGGCGGCTAC
TCTGATGATGGTGCTCCCACCTCAGGTAGGCATTGTGTTGCTGTGACCAT
GTCAGAGCTCAAAGGATGCTGGAGGGCGAACTCGATATTTTGCGGCATGT
GGATGGAGGCAGGCGCCTTCGCGTTCGTTGTCCATGGCCACACCGCTCGG
TGGTCGCTCTCTCTCTCGTAGACAAGGGTGTTTGCCTGAGTCGGTAGCTG
ATAGCGGCTTGACGCGAAAACACCACCTCTACTTACAGACTGCTGTTGTG
TGCCCCCTCCGACGGTGGTGCACGTCCAGTGGGTAGGGAGCAGCAGACAC
AGCAGGAGATCGACGCAAAACAACTACCATTACACGTACACACTGCTTTA
TGTATGATACAAGTAGGGCTTCTGCTGTACCCTGCTGTCCTGAACAAAGG
TCGAACATGAGTCGAACATGAGTCGAACATGAACCGATCGCCAATTAATT
GCTGTTCAGCTCTCTTGGGGATGAGTGCAATCCGTTCTCCGACGAACACC
TTCACTACGGGTATCGGGGTGACGCGTAATTAACTGCTGTTGTGGCACGT
TTACATCGTTTTTCTTATCGCCTCTTCTACGACGCGGAGTAGCAGGTAGA
GCTACACCGCTGTAGTCACCGTTCGGGTACTGTACCTGTTTGATGTGAAA
TTAAGATTCGGTGTGGGCACATGGAGTAGCAGAAGGTCAACGATTGTTGT
ATATACGAGACTGCTGTTGTGTGCCCCCTCCGACAGCGATGCACGTCCAG
TGGGCAGGGAGCAGCAGACACAGCAGGAGATCGACGACGCAACACGTCTA
CTTGTACCAGTACAAGTACTGCTGTACCCTGTGCTGTTCTGAACAAATGT
TGTACATGAAACGATTGCCAATAGCTGTTCATCTCTCTTGGGGCTGAGTC
CAGTCTGTTCTCCGCCGAACATGGCCACTACGGGTGTGACGCTAATTTAG
CCGCTATTGTGGCACGATTAGGGCTATCATCCATTTTTCCACCGCCTCTT
CTACGACAAGGAGTAGAGCTATATTAATACTGCTGTAGTCACCGTTCGGG
TACTGTATGATACCTGTTCGGCGTGAGATTCGGTGCGGGCACATATATGA
AGGTCAACGATTGTTGTATACTATACTGAATACAAGTACAAGACTGCTGT
TGTGTCACCCCTTGGATCGTGGTCCAGGCCAGTGGGCAGGGGGGAGCAGA
CGCAGCAGGAGATCGGCGCAAAACGTGTACAAGTACAAGTACGGCTACCT
GCTGTACCCTGCTGTCATGAGCAATAGTTAGTTGAACGCGAACCATTTGC
CAATTGCTTGTTCTCTCCTTTCGGGAATCTGAGTCCGTTTTCCGCTGAGT
ATCGTATCTACGGGTAGTTTCGCGGTGACGCTTAGCTACTGCTATTACGG
GATTGTTTTTTGCTAAAGAAACAGAATACAGAAAGGGTACAATCCATACC
TGATCGGGACAAGACATAACCCGGGTGGACTTTGCTGTACACAAAACTGA
GATGATTTTATCGGCCGCCCGAAAGAAAAGATCCTTGCTCTGTACAAGTA
AATAGTACATTATTGGGATACGTCAGCACTTTTTCCACCGCGCCTCTTGT
ACGACGAGGGGTACTACCGTCTGTAATCACCGTTCGGGTACTGTACCTGC
TCGATGTGAGATACGGTGCGGGCGCATAGAAGGTCAACGGTTGTTGCACA
AGTACCTGTATCCTATATGTATGCTGTGTACTTCACATACAACTAGAGAC
AAGAGGATAACTTGCACCTCGATCCGTGGCAATAATGTCGACACTTCCAG
TAGAAACTACTCCGATCGTGGTGTGGTCTTTCAAGCTGACAGCGCCGAGG
TATGCGGGGCGGTACATACTAAGTACACTGCTGCTGCACGTTCTCCTTTT
CCCATCACACCCTCCTAGGCCCTAGCCTGGTTCCCGCCGCACTCCACCCT
CCCCTCGAGGAGCACCGACTGGCGACGATCGAGCTTGGCGGGCACCACAC
CACCGTCCGCAATAACCGACGGCGTCGCGATCGAAGATGCGGCAACGACC
ACAGCGAGGCATGCGGCGATTCATGACCATCCCGCCTCCGACACCGCCAC
CACCGCCACAGCTTTAGGGACCACCTCGTCACTACTCCTAGATGCCAACC
CTACCATGGCCAGCAAGGGCATAGCCGACGAGGGCGTAGCCGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8052:486..2729+

>mRNA_S-dermatodea_contig8052.16234.1 ID=mRNA_S-dermatodea_contig8052.16234.1|Name=mRNA_S-dermatodea_contig8052.16234.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at S-dermatodea_contig8052:486..2729+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGCTGGCCTGGAGGATGCGGGTACTGGGGAACGGTCGTGGCGGCTAC
TCTGATGATGGTGCTCCCACCTCAGATGGGCTGGCCTGGAGGATGCGGGT
ACTGGGGAACGGTCGTGGCGGCTACTCTGATGATGGTGCTCCCACCTCAG
GCCCTAGCCTGGTTCCCGCCGCACTCCACCCTCCCCTCGAGGAGCACCGA
CTGGCGACGATCGAGCTTGGCGGGCACCACACCACCGTCCGCAATAACCG
ACGGCGTCGCGATCGAAGATGCGGCAACGACCACAGCGAGGCATGCGGCG
ATTCATGACCATCCCGCCTCCGACACCGCCACCACCGCCACAGCTTTAGG
GACCACCTCGTCACTACTCCTAGATGCCAACCCTACCATGGCCAGCAAGG
GCATAGCCGACGAGGGCGTAGCCGTGGCCCTAGCCTGGTTCCCGCCGCAC
TCCACCCTCCCCTCGAGGAGCACCGACTGGCGACGATCGAGCTTGGCGGG
CACCACACCACCGTCCGCAATAACCGACGGCGTCGCGATCGAAGATGCGG
CAACGACCACAGCGAGGCATGCGGCGATTCATGACCATCCCGCCTCCGAC
ACCGCCACCACCGCCACAGCTTTAGGGACCACCTCGTCACTACTCCTAGA
TGCCAACCCTACCATGGCCAGCAAGGGCATAGCCGACGAGGGCGTAGCCG
TG
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