mRNA_S-dermatodea_contig80295.16213.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig80295.16213.1
Unique NamemRNA_S-dermatodea_contig80295.16213.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig80295.16213.1 vs. uniprot
Match: D7FVZ3_ECTSI (Hydrolase_4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVZ3_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 1.460e-20
Identity = 42/54 (77.78%), Postives = 51/54 (94.44%), Query Frame = 1
Query:    4 VRAVIVENTFLSVSHMVDELLPMLTRIKWLVLRLKWNNEERVRRLAKPVLFISG 165
            VRAVIVENTF+SVSHMVD+L+PML+ IKWLVLRL+W+NEE+ RRL +PVL+ISG
Sbjct:  177 VRAVIVENTFISVSHMVDKLMPMLSGIKWLVLRLRWDNEEKARRLTRPVLYISG 230          
BLAST of mRNA_S-dermatodea_contig80295.16213.1 vs. uniprot
Match: M4BQL6_HYAAE (AB hydrolase-1 domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BQL6_HYAAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.300e-13
Identity = 32/55 (58.18%), Postives = 46/55 (83.64%), Query Frame = 1
Query:    1 KVRAVIVENTFLSVSHMVDELLPMLTRIKWLVLRLKWNNEERVRRLAKPVLFISG 165
            +V AVI+EN+FLS+S MVD L+P LT +K+LVLR+ WNNE  +R++ +P+LFI+G
Sbjct:  137 RVAAVILENSFLSISAMVDALMPFLTYVKFLVLRMDWNNELAIRKVTQPILFIAG 191          
BLAST of mRNA_S-dermatodea_contig80295.16213.1 vs. uniprot
Match: A0A662WQ66_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WQ66_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 5.410e-13
Identity = 33/54 (61.11%), Postives = 45/54 (83.33%), Query Frame = 1
Query:    4 VRAVIVENTFLSVSHMVDELLPMLTRIKWLVLRLKWNNEERVRRLAKPVLFISG 165
            V AVI+ENTFLS+S MVD L+P LT +K LVLRL WN+E+ +++L +P+LFI+G
Sbjct:  209 VAAVILENTFLSISAMVDALMPFLTYVKPLVLRLDWNSEQSIQKLPQPILFIAG 262          
BLAST of mRNA_S-dermatodea_contig80295.16213.1 vs. uniprot
Match: A0A662Y6B3_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y6B3_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 7.490e-13
Identity = 33/55 (60.00%), Postives = 45/55 (81.82%), Query Frame = 1
Query:    1 KVRAVIVENTFLSVSHMVDELLPMLTRIKWLVLRLKWNNEERVRRLAKPVLFISG 165
            +V AVI+ENTFLS+S MVD L+P LT +K LVLRL WN+E+ +++L  P+LFI+G
Sbjct:  210 EVAAVILENTFLSISAMVDALMPFLTYVKPLVLRLDWNSEQAIQKLPHPILFIAG 264          
BLAST of mRNA_S-dermatodea_contig80295.16213.1 vs. uniprot
Match: A0A3M6VKP1_9STRA (AB hydrolase-1 domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VKP1_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 9.430e-13
Identity = 31/55 (56.36%), Postives = 45/55 (81.82%), Query Frame = 1
Query:    1 KVRAVIVENTFLSVSHMVDELLPMLTRIKWLVLRLKWNNEERVRRLAKPVLFISG 165
            KV A+++ENTFLS+S MVD L+P LT +K LVLR+ WNNE  ++++ +P+LFI+G
Sbjct:  184 KVAAIVLENTFLSISAMVDALMPFLTYVKPLVLRINWNNELDIQKVKQPILFIAG 238          
BLAST of mRNA_S-dermatodea_contig80295.16213.1 vs. uniprot
Match: W2QQ06_PHYPN (AB hydrolase-1 domain-containing protein n=34 Tax=Phytophthora TaxID=4783 RepID=W2QQ06_PHYPN)

HSP 1 Score: 69.3 bits (168), Expect = 1.940e-12
Identity = 30/55 (54.55%), Postives = 45/55 (81.82%), Query Frame = 1
Query:    1 KVRAVIVENTFLSVSHMVDELLPMLTRIKWLVLRLKWNNEERVRRLAKPVLFISG 165
            +V AV++ENTFLS+S MVD L+P L+ +K LVLR+ WNNE  ++++ +P+LFI+G
Sbjct:  211 RVAAVVLENTFLSISAMVDALMPFLSYVKPLVLRMDWNNERAIQKIKQPILFIAG 265          
BLAST of mRNA_S-dermatodea_contig80295.16213.1 vs. uniprot
Match: A0A6G0X0E5_9STRA (Hydrolase_4 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X0E5_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.380e-12
Identity = 30/55 (54.55%), Postives = 43/55 (78.18%), Query Frame = 1
Query:    1 KVRAVIVENTFLSVSHMVDELLPMLTRIKWLVLRLKWNNEERVRRLAKPVLFISG 165
            K+  +IVENTFLS+S MVD+++P LT IK +VL + WNNE R+R +  P+LF++G
Sbjct:  188 KIAGLIVENTFLSISSMVDQVMPWLTYIKPIVLAIDWNNERRIRGVTLPILFVAG 242          
BLAST of mRNA_S-dermatodea_contig80295.16213.1 vs. uniprot
Match: H3H829_PHYRM (AB hydrolase-1 domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H829_PHYRM)

HSP 1 Score: 68.6 bits (166), Expect = 3.390e-12
Identity = 31/55 (56.36%), Postives = 45/55 (81.82%), Query Frame = 1
Query:    1 KVRAVIVENTFLSVSHMVDELLPMLTRIKWLVLRLKWNNEERVRRLAKPVLFISG 165
            +V AV++ENTFLS+S MVD L+P LT +K LVLR+ WN+E  +++L +P+LFI+G
Sbjct:  187 RVAAVVLENTFLSISAMVDALMPFLTYVKPLVLRMDWNSELAIQKLKQPILFIAG 241          
BLAST of mRNA_S-dermatodea_contig80295.16213.1 vs. uniprot
Match: A0A1V9YYC0_9STRA (Serine protease family S09X n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YYC0_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 4.690e-12
Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = 1
Query:    1 KVRAVIVENTFLSVSHMVDELLPMLTRIKWLVLRLKWNNEERVRRLAKPVLFISG 165
            K+ A+IVENTFLS+S MVD L+P L+ IK  VL + W+NE R+  LA P+LF+SG
Sbjct:  190 KIAAIIVENTFLSISTMVDSLMPWLSYIKRYVLAIDWSNERRIPSLAHPILFLSG 244          
BLAST of mRNA_S-dermatodea_contig80295.16213.1 vs. uniprot
Match: F0WP23_9STRA (Serine protease family S09X putative n=6 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WP23_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 7.800e-12
Identity = 30/55 (54.55%), Postives = 44/55 (80.00%), Query Frame = 1
Query:    1 KVRAVIVENTFLSVSHMVDELLPMLTRIKWLVLRLKWNNEERVRRLAKPVLFISG 165
            +V  VI+ENTFLS+S M+D ++P L   K +VLR++WNNEERV +L++P+L I+G
Sbjct:  557 EVAGVILENTFLSISSMIDAVMPALRYFKSIVLRIEWNNEERVTKLSQPILLIAG 611          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig80295.16213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVZ3_ECTSI1.460e-2077.78Hydrolase_4 domain-containing protein n=2 Tax=Ecto... [more]
M4BQL6_HYAAE1.300e-1358.18AB hydrolase-1 domain-containing protein n=1 Tax=H... [more]
A0A662WQ66_9STRA5.410e-1361.11Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A662Y6B3_9STRA7.490e-1360.00Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A3M6VKP1_9STRA9.430e-1356.36AB hydrolase-1 domain-containing protein n=1 Tax=P... [more]
W2QQ06_PHYPN1.940e-1254.55AB hydrolase-1 domain-containing protein n=34 Tax=... [more]
A0A6G0X0E5_9STRA3.380e-1254.55Hydrolase_4 domain-containing protein n=1 Tax=Apha... [more]
H3H829_PHYRM3.390e-1256.36AB hydrolase-1 domain-containing protein n=2 Tax=P... [more]
A0A1V9YYC0_9STRA4.690e-1258.18Serine protease family S09X n=1 Tax=Thraustotheca ... [more]
F0WP23_9STRA7.800e-1254.55Serine protease family S09X putative n=6 Tax=Albug... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig80295contigS-dermatodea_contig80295:300..470 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.0
Seed ortholog evalue9.4e-17
Seed eggNOG ortholog2880.D7FVZ3
Preferred namebem46
KEGG koko:K06889
GOsGO:0000322,GO:0000323,GO:0000324,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005773,GO:0005783,GO:0005886,GO:0007275,GO:0008150,GO:0012505,GO:0016020,GO:0016787,GO:0016788,GO:0019866,GO:0022622,GO:0031090,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0048364,GO:0048731,GO:0048856,GO:0071944,GO:0099402
EggNOG free text desc.protein depalmitoylation
EggNOG OGsCOG1073@1,KOG4391@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-01_002710.1
Exons1
Model size171
Cds size171
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925315.1538095-CDS-S-dermatodea_contig80295:299..4701622925315.1538095-CDS-S-dermatodea_contig80295:299..470Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80295 300..470 -
1694079849.561736-CDS-S-dermatodea_contig80295:299..4701694079849.561736-CDS-S-dermatodea_contig80295:299..470Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80295 300..470 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig80295.16213.1prot_S-dermatodea_contig80295.16213.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig80295 300..470 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig80295.16213.1

>prot_S-dermatodea_contig80295.16213.1 ID=prot_S-dermatodea_contig80295.16213.1|Name=mRNA_S-dermatodea_contig80295.16213.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=57bp
KVRAVIVENTFLSVSHMVDELLPMLTRIKWLVLRLKWNNEERVRRLAKPV
LFISGA*
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mRNA from alignment at S-dermatodea_contig80295:300..470-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig80295.16213.1 ID=mRNA_S-dermatodea_contig80295.16213.1|Name=mRNA_S-dermatodea_contig80295.16213.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=171bp|location=Sequence derived from alignment at S-dermatodea_contig80295:300..470- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGTGCGGGCGGTGATCGTGGAAAACACATTCCTCAGCGTGTCGCACAT GGTGGATGAACTGCTGCCCATGCTCACGCGCATAAAGTGGCTCGTGCTTC GGCTGAAGTGGAACAACGAGGAGCGAGTGAGGCGTCTCGCCAAGCCGGTT CTCTTCATATCGGGTGCGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig80295:300..470-

>mRNA_S-dermatodea_contig80295.16213.1 ID=mRNA_S-dermatodea_contig80295.16213.1|Name=mRNA_S-dermatodea_contig80295.16213.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=342bp|location=Sequence derived from alignment at S-dermatodea_contig80295:300..470- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGTGCGGGCGGTGATCGTGGAAAACACATTCCTCAGCGTGTCGCACAT
GGTGGATGAACTGCTGCCCATGCTCACGCGCATAAAGTGGCTCGTGCTTC
GGCTGAAGTGGAACAACGAGGAGCGAGTGAGGCGTCTCGCCAAGCCGGTT
CTCTTCATATCGGGTGCGTGAAAGGTGCGGGCGGTGATCGTGGAAAACAC
ATTCCTCAGCGTGTCGCACATGGTGGATGAACTGCTGCCCATGCTCACGC
GCATAAAGTGGCTCGTGCTTCGGCTGAAGTGGAACAACGAGGAGCGAGTG
AGGCGTCTCGCCAAGCCGGTTCTCTTCATATCGGGTGCGTGA
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