mRNA_S-dermatodea_contig8028.16211.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8028.16211.1
Unique NamemRNA_S-dermatodea_contig8028.16211.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8028.16211.1 vs. uniprot
Match: D8LMP7_ECTSI (Component of SCAR regulatory complex n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMP7_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 3.050e-9
Identity = 32/41 (78.05%), Postives = 35/41 (85.37%), Query Frame = 3 
Query:   93 LPLKYDDPSLLLALNGCIDTAVWRLLAYAFAASFSSESWRR 215
            LP KY+D SLLLAL+GCIDT VW LL YAFAASFSSE WR+
Sbjct:  780 LPFKYEDHSLLLALDGCIDTPVWSLLPYAFAASFSSELWRK 820
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8028.16211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMP7_ECTSI3.050e-978.05Component of SCAR regulatory complex n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8028contigS-dermatodea_contig8028:3026..5993 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1006
Cds size531
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8028.16211.1prot_S-dermatodea_contig8028.16211.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8028 3069..5561 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925314.9395123-UTR-S-dermatodea_contig8028:3025..30681622925314.9395123-UTR-S-dermatodea_contig8028:3025..3068Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8028 3026..3068 +
1694079849.3998709-UTR-S-dermatodea_contig8028:3025..30681694079849.3998709-UTR-S-dermatodea_contig8028:3025..3068Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8028 3026..3068 +
1622925314.9754186-UTR-S-dermatodea_contig8028:5561..59931622925314.9754186-UTR-S-dermatodea_contig8028:5561..5993Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8028 5562..5993 +
1694079849.4327588-UTR-S-dermatodea_contig8028:5561..59931694079849.4327588-UTR-S-dermatodea_contig8028:5561..5993Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8028 5562..5993 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925314.9499183-CDS-S-dermatodea_contig8028:3068..31151622925314.9499183-CDS-S-dermatodea_contig8028:3068..3115Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8028 3069..3115 +
1694079849.410579-CDS-S-dermatodea_contig8028:3068..31151694079849.410579-CDS-S-dermatodea_contig8028:3068..3115Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8028 3069..3115 +
1622925314.965444-CDS-S-dermatodea_contig8028:5077..55611622925314.965444-CDS-S-dermatodea_contig8028:5077..5561Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8028 5078..5561 +
1694079849.4215326-CDS-S-dermatodea_contig8028:5077..55611694079849.4215326-CDS-S-dermatodea_contig8028:5077..5561Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8028 5078..5561 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8028.16211.1

>prot_S-dermatodea_contig8028.16211.1 ID=prot_S-dermatodea_contig8028.16211.1|Name=mRNA_S-dermatodea_contig8028.16211.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=177bp
MGDVKRDGLPPFNLYMPAAEVRRPLSAAGVERVHRYCGVALACVRLRGVV
FVRIVAKVSRQGPQETLLVAARSHDTEVYGTRLPRRGRLRLALSDQYVAL
MPKVRYDGRSNATTPRTAVCACRCGSGVLDMVVGCIIMIYLCCEGSFSMS
EPPRAIPLQHLIDPVSTPATHPCEPF*
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mRNA from alignment at S-dermatodea_contig8028:3026..5993+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8028.16211.1 ID=mRNA_S-dermatodea_contig8028.16211.1|Name=mRNA_S-dermatodea_contig8028.16211.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2968bp|location=Sequence derived from alignment at S-dermatodea_contig8028:3026..5993+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGAAGATGGGCTTGCGGTGGCGGGTGTGGGTCGTGATATTTGATGGGCG
ACGTCAAGAGGGATGGTTTGCCCCCTTTCAATCTCTACATGTGAGCGACA
CAGCGTGCCCTTGAAAGACGCAGAAGAAGAAGAAGAGGTGTCTTACTCCC
ACCTTTGGAAAAATACCTATTAGGTATTATATATAGGTTTTTTCCAAAGA
CTCCCACATGGGCTATCATTTGTTATCTTTTGTAGGTTTGCAACGGGATT
GGAGGGCAACTCTTTTGCAACAAGAATATTGCAGGAAGTTGTTGTGGTTT
GCCGGCGGTGTGTACAGTCTGCACTATACTACTGTATTAATATTAATAAT
CAGATGGTGGCTGGGTTGTTATATCGATATTTGCAGAGCACAAGACATCT
GCTGCTGCTGCTGCCGTCTTGCAAACTCTAAAATATGTCGTGCCCTTTGA
CATTAGACACAGCAGCCGCAGCGGCTTTCATCATATCTTATCAAAATGCT
CCGCACGAACGACGGCGGTGGTACGCATATTTTGCATGCACTTCCTTACA
ACAACTAACTGCGAACTGGCAATAATGCAATGCCGAAACGAGAATGTAAC
AATATCATTATACTTGTATAGGATCGAGCGGCCGATATCGTGAGTACAAA
CATACTTCAGGGTCGCCCGTTCGTTTGCATTGACTTGAGCGTCATGCTTT
GAGATTTGCAAAATGTTGCCGTGCAAGGTGTTGTTGACAACTAAATACAT
GATAATCTGCTTGCTGTAGTGCTTTTGTGTGGTGACATTCACAAGTTGAT
GGCCGCCTTCATGTGCAACACCGAAGCTATTACAGTAATAGATATACTCA
CCTGTTGTATTAGACCTTTTGACGATTGTCCTTTCTCTGAAAACGATGCT
TGCGGTCCACCGCCCCGGCTCTCGGCGCATGAGAGCGCTTTTTTATCCCT
CTCTCGAGCCCTGCTGCAGTGCTGCTGTGTGGGGGTTCCATTTCGGACCC
TTATGCGGCGATCCGATTGGCCGACACTATTTTAGTTTTAGGGACGACGT
AATTTCCCCCCTGTACGCTCCAATTCTGTACAAGTACCACTATTCTCTAT
TCTGTATCGTCTTGTTCGCCAGCGGTGGGTGCGATATCTATCCCGTCTCG
CCACTCGTTCCTTTTTCGCGTGGTATCCACTTCAGTAAGTAACTGTGTGG
TTGTGTGGCCGTATTCCTCCCAGTACACACCATCCTTACTAATTAAAGGA
ACAATCCACGGCTTTTAAAAGCGCGATTTAGAGTTGATTGTTCTGGACAT
AAATAACTGCGATTGAGAGTTGAGGCTGTGAAACATCTGCGAAGCAAAGA
TCATTTTGTGTTTCACCTCATCGGGCGCAGACCGTGGCTACCTACTAGTA
ATACTAATACTATGATATGATAACTAACATGCTGTACATTCATGTATTTT
TGGGACGTCTTTTCCCGCCCGTACGCTGCGATTTGTCGGTCGACAGCGCT
GGATCTCCGCCCCGCATTATATTTACAGACAGTACGGGAGTAAATAGTTG
GTTTGTATTTAGTACCTCGTGGATTTTGGCCGGCTGCGGGACCCCGACTC
TTTCCGCTCCGAGCAGGCAGGGGTTCATTGTTGTTGTTGTTGTTGTTGTT
GTTCCTATCGCGTAAACTGACACTTGGAGTATCATAAGGCAGTGTGCAGT
GTGGCCGCAACCATCAATGGACCCAATGGCACATACAGTACAGTAGTACG
GTACAACAGTACAAATTCAACAATCAATCGCCGATAAGCAACGAAATAAT
ACCGGGAACGCCGCTAGAGGAAGGAAAACGAACTATAATATCAAAACGTG
GGCTTTTAAATACTGTGTTCATGCGCCGGTAGGCGTCTTTATATGATCAT
ACATAAACCGAGCACTGGCACTCTATCCCGTGATAAGGTCAACGCCCGAA
GCCACCCAGGTCGCTCTCCATACGGCACCTCCACGCATATTTCGACCTCG
CTCTGGGTCACAGCTATCCCGACGTCCTTGGCTTACTCTTACTCATGACC
AGGCCTGCCGCTGAAGTACGACGACCCCTCTCTGCTGCTGGCGTTGAACG
GGTGCATCGATACTGCGGTGTGGCGCTTGCTTGCGTACGCCTTCGCGGCG
TCGTTTTCGTCAGAATCGTGGCGAAGGTTAGCCGCCAAGGACCACAGGAA
ACCTTGCTTGTTGCTGCACGTTCCCATGACACTGAGGTGTATGGAACACG
GTTGCCACGCCGTGGTCGGTTGCGGTTGGCCTTGTCAGACCAGTATGTAG
CATTGATGCCAAAGGTTAGATACGATGGAAGGTCAAACGCAACAACACCC
AGAACTGCAGTCTGTGCTTGTCGCTGTGGCAGCGGTGTCCTCGATATGGT
GGTGGGTTGTATTATAATGATATACCTTTGTTGCGAGGGTAGTTTCAGCA
TGAGTGAACCGCCACGAGCAATACCTTTGCAGCATCTCATCGACCCCGTG
TCGACCCCAGCTACCCACCCGTGTGAGCCATTCTGATATGCTTGGAAGAG
GTACTGTTTTCGCTGATAGAATAAACCAGTCGACATATCATCTGCACCTA
CATGCGCGGCCCTCTTCGGTTCTCGCGACAATGCACGCCTCCGTTAACCG
CCGCCATCCATCTTCCGCAACGCAGCACACAGGCTTACGGGCGTGGGTCT
CGCGGCTTCCCACATCGGCTCCTTCCTGCCATTGGCGGGGTTCGCATCAA
ACACGTCTGAACCGTACGTAAGCCCTCACCACCCACTCCCACCAACGCGC
ACCTGCAAACGCGCTGCTCCTTTCAGATGTCAGTACGTGAGCCGTCTGGA
TGTATTCTATAACATCGAGCGTGTCGTGGTGTTCACCATCATCGACCCCG
CAGGGTGCGTTTTTCGCGGGAGGGGGTAGGCCTCGGCGTGGACCGGGCGC
AGGGGAGCGGGGGCGACG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8028:3026..5993+

>mRNA_S-dermatodea_contig8028.16211.1 ID=mRNA_S-dermatodea_contig8028.16211.1|Name=mRNA_S-dermatodea_contig8028.16211.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1062bp|location=Sequence derived from alignment at S-dermatodea_contig8028:3026..5993+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGCGACGTCAAGAGGGATGGTTTGCCCCCTTTCAATCTCTACATATG
GGCGACGTCAAGAGGGATGGTTTGCCCCCTTTCAATCTCTACATGCCTGC
CGCTGAAGTACGACGACCCCTCTCTGCTGCTGGCGTTGAACGGGTGCATC
GATACTGCGGTGTGGCGCTTGCTTGCGTACGCCTTCGCGGCGTCGTTTTC
GTCAGAATCGTGGCGAAGGTTAGCCGCCAAGGACCACAGGAAACCTTGCT
TGTTGCTGCACGTTCCCATGACACTGAGGTGTATGGAACACGGTTGCCAC
GCCGTGGTCGGTTGCGGTTGGCCTTGTCAGACCAGTATGTAGCATTGATG
CCAAAGGTTAGATACGATGGAAGGTCAAACGCAACAACACCCAGAACTGC
AGTCTGTGCTTGTCGCTGTGGCAGCGGTGTCCTCGATATGGTGGTGGGTT
GTATTATAATGATATACCTTTGTTGCGAGGGTAGTTTCAGCATGAGTGAA
CCGCCACGAGCAATACCTTTGCAGCATCTCATCGACCCCGTGTCGACCCC
AGCTACCCACCCGTGTGAGCCATTCTGAGCCTGCCGCTGAAGTACGACGA
CCCCTCTCTGCTGCTGGCGTTGAACGGGTGCATCGATACTGCGGTGTGGC
GCTTGCTTGCGTACGCCTTCGCGGCGTCGTTTTCGTCAGAATCGTGGCGA
AGGTTAGCCGCCAAGGACCACAGGAAACCTTGCTTGTTGCTGCACGTTCC
CATGACACTGAGGTGTATGGAACACGGTTGCCACGCCGTGGTCGGTTGCG
GTTGGCCTTGTCAGACCAGTATGTAGCATTGATGCCAAAGGTTAGATACG
ATGGAAGGTCAAACGCAACAACACCCAGAACTGCAGTCTGTGCTTGTCGC
TGTGGCAGCGGTGTCCTCGATATGGTGGTGGGTTGTATTATAATGATATA
CCTTTGTTGCGAGGGTAGTTTCAGCATGAGTGAACCGCCACGAGCAATAC
CTTTGCAGCATCTCATCGACCCCGTGTCGACCCCAGCTACCCACCCGTGT
GAGCCATTCTGA
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