mRNA_S-dermatodea_contig8026.16209.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig8026.16209.1 vs. uniprot
Match: A0A6H5KCI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCI7_9PHAE) HSP 1 Score: 167 bits (423), Expect = 2.030e-44 Identity = 102/312 (32.69%), Postives = 161/312 (51.60%), Query Frame = 1
Query: 34 DITINLLELCGMFMTALCVIGHENDQPENEGDPILMRGDNVSAVSWVTRCGGSRDPKSGLVMRLLGRLEFSSGWCMVAKHIPGVQNVLADGISRWPRHTLTAEVRRLGASLAFGALGNSLHKAYVSRWSAWCAFST*TYLARAG*RGSNSTGVGYIHDICLVEGNQRSTISRYLSALKYFHKMFAGWELPTTHWTIHEVLRGIERTHGTHRARSVKQTRKPLSWSLLLAGRQVVFDSPEDGSVVWCGLALTYFLLCRAGKLFVFDDSGLVHKESCLTRRDLTFCQGQRSLLRKDREKADRVMLTFRGAKNNQ 969
D+++N+ EL GM MTA + H D+PE G +LMRGDN+SAV WV +C G+++P+SG +MR++G LE + W AKHI G+ N LA+GISRW +TA++R + + + ++ + + D+ + S+ + S L + E+ T+ I LRG+ R+H R ++ R P++WS+L ++ G V W L+L+YF + R+ ++F + SG+VH CLTRRD+ F +G R L ++ADRV + FRG K +Q
Sbjct: 33 DLSMNVFELLGMVMTAWALTVHAGDRPEYPGQSVLMRGDNMSAVHWVNKCRGAKEPRSGALMRMMGCLEMRNEWRFRAKHIKGLANTLANGISRWKHDEITAKLRSYRPDICW-------QEQHLGQEAL---------------------------DLTSAVLDSSSSDDQLQSRLNAVTRQV---EIDTSSPLIKCALRGVARSHVDLGRR--RRVRLPVTWSMLRDSEGIIPSWGLAGRVTWLCLSLSYFFITRSDEMFA-NSSGVVHPVHCLTRRDVAFFRGSRQLEYMHWQQADRVEIRFRGHKGDQ 304
BLAST of mRNA_S-dermatodea_contig8026.16209.1 vs. uniprot
Match: A0A6H5K312_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K312_9PHAE) HSP 1 Score: 163 bits (413), Expect = 7.500e-42 Identity = 99/230 (43.04%), Postives = 133/230 (57.83%), Query Frame = 1
Query: 334 TAEVRRLGASLAFGALGNSLHKAYVSRWSAWCAFST*TYLARAG*RGSN-----STGV-GYIHDI-------CLVEGNQRSTISRYLSALKYFHKMFAGWELPTTHWTIHEVLRGIERTHGTHRARSVKQTRKPLSWSLLLAGRQVVFDSPEDGSVVWCGLALTYFLLCRAGKLFVFDDSGLVHKESCLTRRDLTFCQGQRSLLRKDREKADRVMLTFRGAKNNQYCHGA 984
+ E RL +L FG+LG+ +K Y W+ W ARAG GS S GV + ++ C NQ TI YLSA+KYFHKM AGWELPT+H+ I +L+ I+ H + + + R PLSW +L AG+ VV +S E G ++WCGLAL+Y L+CRA +++ DDSGLVH + CLTR DL F G + DR +A RV +TFR +K +Q GA
Sbjct: 317 SVEGERLVNALTFGSLGSGTNKVYQRMWNTWKE-------ARAG-AGSGPWLRESDGVESAVRELSVFMACRCFGHKNQSQTIRGYLSAVKYFHKMHAGWELPTSHFQILAMLKTIDGVHANTQTKP--RVRNPLSWDMLEAGKCVVENSGESGKLIWCGLALSYLLMCRASEIWA-DDSGLVHSDFCLTRGDLGFFCGPVRVAWADRRQASRVEVTFRASKADQKRLGA 535
BLAST of mRNA_S-dermatodea_contig8026.16209.1 vs. uniprot
Match: A0A6H5L127_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L127_9PHAE) HSP 1 Score: 138 bits (347), Expect = 2.710e-36 Identity = 72/158 (45.57%), Postives = 103/158 (65.19%), Query Frame = 1
Query: 511 CLVEGNQRSTISRYLSALKYFHKMFAGWELPTTHWTIHEVLRGIERTHGTHRARSVKQTRKPLSWSLLLAGRQVVFDSPEDGSVVWCGLALTYFLLCRAGKLFVFDDSGLVHKESCLTRRDLTFCQGQRSLLRKDREKADRVMLTFRGAKNNQYCHGA 984
CLV NQ T+ YL+A+KYFHK+ AGWELPT+H+ + V + I+R H RA + R+PL+ +++ GR+ + G V W G+AL+YFLLCRA +L+ + + GLVH + CLTR +L F +G L R +R +ADRV +TFR +K +Q GA
Sbjct: 5 CLVYKNQSQTVKGYLAAIKYFHKLDAGWELPTSHFRVVAVGKAIDRLHA--RAETKPLVRQPLTVPMIITGRERA-QTNAFGLVTWMGIALSYFLLCRASELWAYQN-GLVHADFCLTRGNLVFFEGACRLARNERRRADRVEVTFRASKADQKRRGA 158
BLAST of mRNA_S-dermatodea_contig8026.16209.1 vs. uniprot
Match: A0A6H5KZQ1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZQ1_9PHAE) HSP 1 Score: 141 bits (356), Expect = 8.860e-36 Identity = 82/209 (39.23%), Postives = 119/209 (56.94%), Query Frame = 1
Query: 373 GALGNSLHKAYVSRWSAWCAFST*TYLA-----RAG*RGSNSTGVGYIHDICLVEGNQRSTISRYLSALKYFHKMFAGWELPTTHWTIHEVLRGIERTHGTHRARSVKQTRKPLSWSLLLAGRQVVFDSPEDGSVVWCGLALTYFLLCRAGKLFVFDDSGLVHKESCLTRRDLTFCQGQRSLLRKDREKADRVMLTFRGAKNNQYCHGA 984
G+L S K Y S+W W A L+ G + ++ CLV NQ T+ YL+A+KYFHK++AGWELPT+H+ + V I+R H RA + R+PL+ +++AGR+ + V W G+AL+YFLLCRA +L+ + + GLVH + CLTR +L F +G L +R +ADRV +TFR +K +Q GA
Sbjct: 4 GSLNASTLKGYHSKWDTWTAERAKANLSPWLYEEDGVDSAVRELTVFMASRCLVYKNQSQTVKGYLAAIKYFHKLYAGWELPTSHFRVVAVGNAIDRLHA--RAETKPLVRQPLTVPMIIAGRERA-QTDAFRLVTWMGIALSYFLLCRASELWAYHN-GLVHADFCLTRGNLVFFEGSCQLAWDERRRADRVEVTFRASKADQKRRGA 208
BLAST of mRNA_S-dermatodea_contig8026.16209.1 vs. uniprot
Match: A0A6H5KDK3_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDK3_9PHAE) HSP 1 Score: 140 bits (353), Expect = 3.120e-35 Identity = 81/206 (39.32%), Postives = 116/206 (56.31%), Query Frame = 1
Query: 376 ALGNSLHKAYVSRWSAWCAFST*T----YLARAG*RGSNSTGVGYIHDICLVEGNQRSTISRYLSALKYFHKMFAGWELPTTHWTIHEVLRGIERTHGTHRARSVKQTRKPLSWSLLLAGRQVVFDSPEDGSVVWCGLALTYFLLCRAGKLFVFDDSGLVHKESCLTRRDLTFCQGQRSLLRKDREKADRVMLTFRGAKNNQYCHG 981
++G++ H+ Y ++W AW F + +L +T + ++ NQ ST+ YL+A+K+FHK+ GWE+PT+H I +GI R G ++ Q R PL+WS+L G V + E G V+W GLALTYFLLCRA +LF + D GLVH E CLTR LTF +G + +DR AD V + F +K +Q G
Sbjct: 5 SVGSATHQLYAAKWKAWTKFMSNKGMGPWLHLLDAAVVINTLLEFMACRLFAFDNQLSTVRGYLAAVKFFHKLHLGWEVPTSHCLIVAAGKGIARIRGGVGKKA--QVRLPLTWSMLAQGYLTVSEFKEGGRVMWLGLALTYFLLCRASELFAYAD-GLVHPEFCLTRNSLTFYRGTERVGIEDRALADSVQVDFIASKGDQNRDG 207
BLAST of mRNA_S-dermatodea_contig8026.16209.1 vs. uniprot
Match: A0A6H5JGT0_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGT0_9PHAE) HSP 1 Score: 144 bits (362), Expect = 1.920e-34 Identity = 66/117 (56.41%), Postives = 86/117 (73.50%), Query Frame = 1
Query: 1 LRELSARKQASDITINLLELCGMFMTALCVIGHENDQPENEGDPILMRGDNVSAVSWVTRCGGSRDPKSGLVMRLLGRLEFSSGWCMVAKHIPGVQNVLADGISRWPRHTLTAEVRR 351
L++ +AR++ +TINLLEL GM MTA + D+P+N DP+LMRGDN++AV+W RCGG+RD ++ L+MR+LGRLE S W AKHIPGV+N LADGISRWPR L V+R
Sbjct: 1397 LKQKAARRETCSVTINLLELVGMVMTAWVMHSLVGDRPKNNNDPVLMRGDNMAAVTWSNRCGGARDKRACLMMRMLGRLEISGEWSYEAKHIPGVKNTLADGISRWPRSELADRVQR 1513
BLAST of mRNA_S-dermatodea_contig8026.16209.1 vs. uniprot
Match: A0A6H5KVY8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVY8_9PHAE) HSP 1 Score: 113 bits (282), Expect = 1.850e-27 Identity = 50/73 (68.49%), Postives = 58/73 (79.45%), Query Frame = 1
Query: 136 LMRGDNVSAVSWVTRCGGSRDPKSGLVMRLLGRLEFSSGWCMVAKHIPGVQNVLADGISRWPRHTLTAEVRRL 354
+MRGDNVSAVSWV RCGGSRD ++GL+MRLLGR+E +GWC VAKHIPG +N LADGISRW + V RL
Sbjct: 1 MMRGDNVSAVSWVNRCGGSRDRRAGLLMRLLGRMEIENGWCHVAKHIPGRENTLADGISRWKSEDVEVNVERL 73
BLAST of mRNA_S-dermatodea_contig8026.16209.1 vs. uniprot
Match: A0A6H5L2H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H9_9PHAE) HSP 1 Score: 105 bits (261), Expect = 8.860e-24 Identity = 50/119 (42.02%), Postives = 74/119 (62.18%), Query Frame = 1
Query: 4 RELSARKQASD--ITINLLELCGMFMTALCVIGHENDQPENEGDPILMRGDNVSAVSWVTRCG--GSRDPKSGLVMRLLGRLEFSSGWCMVAKHIPGVQNVLADGISRWPRHTLTAEVR 348
R + AR++ I IN+LEL M MTA ++ D+PE EG+ ++MR DN SAVSWV + G G + + G +MR++G L+ GWC +H+PGV+N +ADGI+RW + V+
Sbjct: 18 RTIRARQKGEGDFICINVLELMTMVMTAYVMVISRGDKPEREGEAVMMRADNESAVSWVKKWGWEGKKKARIGALMRMMGALKTIGGWCFQTRHVPGVENRVADGITRWKEEEIADNVQ 136
BLAST of mRNA_S-dermatodea_contig8026.16209.1 vs. uniprot
Match: A0A6H5JPK1_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK1_9PHAE) HSP 1 Score: 110 bits (276), Expect = 3.600e-23 Identity = 51/104 (49.04%), Postives = 69/104 (66.35%), Query Frame = 1
Query: 34 DITINLLELCGMFMTALCVIGHENDQPENEGDPILMRGDNVSAVSWVTRCGGSRDPKSGLVMRLLGRLEFSSGWCMVAKHIPGVQNVLADGISRWPRHTLTAEV 345
D+++N+ EL GM +TA + +PE G ILMRGDN+SAV WV +C G+++P+SG +MR+LG LE S W AKHI GV N LADGISRW + + +
Sbjct: 878 DLSMNVFELLGMVVTAWALTVQAGVKPEYPGQSILMRGDNMSAVHWVNKCRGAKEPRSGTLMRMLGCLEMRSEWRFRAKHIKGVANTLADGISRWKHDEIASNL 981
BLAST of mRNA_S-dermatodea_contig8026.16209.1 vs. uniprot
Match: A0A6H5KDR9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDR9_9PHAE) HSP 1 Score: 103 bits (257), Expect = 2.140e-21 Identity = 69/214 (32.24%), Postives = 108/214 (50.47%), Query Frame = 1
Query: 352 LGASLAFGALGNSLHKAYVSRWSAWCAFST*T-----YLARAG*RGSN---STGVGYIHDICLVEGNQRSTISRYLSALKYFHKMFAGWELPTTHWTIHEVLRGIERTHGTHRARSVKQTRKPLSWSLLLAGRQVVFDSPEDGSVVWCGLALTYFLLCRAGKLFVFDDSGLVHKESCLTRRDLTFCQGQRSLLRKDREK-ADRVMLTFRGAKNN 966
L L+ + S H Y + W W + T YL A RG S Y+ + GN+ STI+ L A+KY+HK G +LP H V G+ R H + + R+P+SW++L +G + E G V+W GLA++YF +CR ++F + + G +HKE +TR ++ F +G++ LL + ADRV + F +K+N
Sbjct: 5 LAVLLSTVGVAPSTHATYAAAWKLWVEWRTVAVRKSVYLDEA--RGEEVLASELAKYMAYLFFCRGNKMSTIAGKLVAVKYYHKRI-GVDLPMKHHFFRAVKAGLARESTLH---TESRMRRPISWTILRSGIRTAAAWGEGGRVLWLGLAVSYFFMCRPSEIFAYGN-GKIHKEFGITRGNVAFWKGEQQLLTPALWRCADRVEVLFEASKSN 211 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8026.16209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig8026.16209.1 >prot_S-dermatodea_contig8026.16209.1 ID=prot_S-dermatodea_contig8026.16209.1|Name=mRNA_S-dermatodea_contig8026.16209.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=135bp MFAGWELPTTHWTIHEVLRGIERTHGTHRARSVKQTRKPLSWSLLLAGRQback to top mRNA from alignment at S-dermatodea_contig8026:7655..8946- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig8026.16209.1 ID=mRNA_S-dermatodea_contig8026.16209.1|Name=mRNA_S-dermatodea_contig8026.16209.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1292bp|location=Sequence derived from alignment at S-dermatodea_contig8026:7655..8946- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig8026:7655..8946- >mRNA_S-dermatodea_contig8026.16209.1 ID=mRNA_S-dermatodea_contig8026.16209.1|Name=mRNA_S-dermatodea_contig8026.16209.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at S-dermatodea_contig8026:7655..8946- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |